Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | PASSERINI_GROWTH |
| Enrichment Score (ES) | 0.6890012 |
| Normalized Enrichment Score (NES) | 2.0198298 |
| Nominal p-value | 0.0018181818 |
| FDR q-value | 0.0038403769 |
| FWER p-Value | 0.154 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 27 | 0.757 | 0.2095 | Yes |
| 2 | EDN1 | EDN1 Entrez, Source | endothelin 1 | 326 | 0.291 | 0.2685 | Yes |
| 3 | LTBP1 | LTBP1 Entrez, Source | latent transforming growth factor beta binding protein 1 | 525 | 0.222 | 0.3157 | Yes |
| 4 | IGFBP1 | IGFBP1 Entrez, Source | insulin-like growth factor binding protein 1 | 584 | 0.209 | 0.3697 | Yes |
| 5 | TGFB2 | TGFB2 Entrez, Source | transforming growth factor, beta 2 | 659 | 0.195 | 0.4187 | Yes |
| 6 | IGF2 | IGF2 Entrez, Source | insulin-like growth factor 2 (somatomedin A) | 682 | 0.188 | 0.4697 | Yes |
| 7 | VEGFC | VEGFC Entrez, Source | vascular endothelial growth factor C | 778 | 0.173 | 0.5109 | Yes |
| 8 | FLT1 | FLT1 Entrez, Source | fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) | 789 | 0.172 | 0.5582 | Yes |
| 9 | BDNF | BDNF Entrez, Source | brain-derived neurotrophic factor | 795 | 0.170 | 0.6054 | Yes |
| 10 | IFRD1 | IFRD1 Entrez, Source | interferon-related developmental regulator 1 | 999 | 0.147 | 0.6312 | Yes |
| 11 | NR4A1 | NR4A1 Entrez, Source | nuclear receptor subfamily 4, group A, member 1 | 1043 | 0.142 | 0.6676 | Yes |
| 12 | NOV | NOV Entrez, Source | nephroblastoma overexpressed gene | 1227 | 0.126 | 0.6890 | Yes |
| 13 | IGF1R | IGF1R Entrez, Source | insulin-like growth factor 1 receptor | 2201 | 0.077 | 0.6375 | No |
| 14 | TGFA | TGFA Entrez, Source | transforming growth factor, alpha | 2430 | 0.070 | 0.6399 | No |
| 15 | PDGFRB | PDGFRB Entrez, Source | platelet-derived growth factor receptor, beta polypeptide | 2644 | 0.064 | 0.6417 | No |
| 16 | LTBP2 | LTBP2 Entrez, Source | latent transforming growth factor beta binding protein 2 | 3107 | 0.052 | 0.6215 | No |
| 17 | KDR | KDR Entrez, Source | kinase insert domain receptor (a type III receptor tyrosine kinase) | 3567 | 0.041 | 0.5986 | No |
| 18 | IL6 | IL6 Entrez, Source | interleukin 6 (interferon, beta 2) | 3854 | 0.036 | 0.5870 | No |
| 19 | FGF7 | FGF7 Entrez, Source | fibroblast growth factor 7 (keratinocyte growth factor) | 4156 | 0.030 | 0.5728 | No |
| 20 | INHBA | INHBA Entrez, Source | inhibin, beta A (activin A, activin AB alpha polypeptide) | 5081 | 0.014 | 0.5072 | No |
| 21 | PGF | PGF Entrez, Source | placental growth factor, vascular endothelial growth factor-related protein | 5143 | 0.012 | 0.5061 | No |
| 22 | FGF1 | FGF1 Entrez, Source | fibroblast growth factor 1 (acidic) | 5663 | 0.005 | 0.4685 | No |
| 23 | PDGFRA | PDGFRA Entrez, Source | platelet-derived growth factor receptor, alpha polypeptide | 6101 | -0.002 | 0.4361 | No |
| 24 | KIT | KIT Entrez, Source | v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog | 6856 | -0.013 | 0.3831 | No |
| 25 | PDGFRL | PDGFRL Entrez, Source | platelet-derived growth factor receptor-like | 7568 | -0.024 | 0.3364 | No |
| 26 | FGF2 | FGF2 Entrez, Source | fibroblast growth factor 2 (basic) | 8465 | -0.038 | 0.2798 | No |
| 27 | EDN2 | EDN2 Entrez, Source | endothelin 2 | 8626 | -0.041 | 0.2792 | No |
| 28 | TGFBR2 | TGFBR2 Entrez, Source | transforming growth factor, beta receptor II (70/80kDa) | 10602 | -0.080 | 0.1532 | No |
| 29 | EGF | EGF Entrez, Source | epidermal growth factor (beta-urogastrone) | 12819 | -0.188 | 0.0393 | No |
