Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | RESPONSE_TO_HYPOXIA |
| Enrichment Score (ES) | 0.66620195 |
| Normalized Enrichment Score (NES) | 1.7827804 |
| Nominal p-value | 0.003773585 |
| FDR q-value | 0.02862046 |
| FWER p-Value | 0.98 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | CD24 | CD24 Entrez, Source | CD24 molecule | 26 | 0.771 | 0.3904 | Yes |
| 2 | TGFB2 | TGFB2 Entrez, Source | transforming growth factor, beta 2 | 659 | 0.195 | 0.4422 | Yes |
| 3 | CLDN3 | CLDN3 Entrez, Source | claudin 3 | 788 | 0.172 | 0.5201 | Yes |
| 4 | EPAS1 | EPAS1 Entrez, Source | endothelial PAS domain protein 1 | 1321 | 0.118 | 0.5403 | Yes |
| 5 | PLOD1 | PLOD1 Entrez, Source | procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 | 1639 | 0.101 | 0.5677 | Yes |
| 6 | ALAS2 | ALAS2 Entrez, Source | aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) | 2058 | 0.083 | 0.5786 | Yes |
| 7 | EGLN2 | EGLN2 Entrez, Source | egl nine homolog 2 (C. elegans) | 2331 | 0.073 | 0.5952 | Yes |
| 8 | BNIP3 | BNIP3 Entrez, Source | BCL2/adenovirus E1B 19kDa interacting protein 3 | 2391 | 0.071 | 0.6270 | Yes |
| 9 | EGLN1 | EGLN1 Entrez, Source | egl nine homolog 1 (C. elegans) | 2652 | 0.064 | 0.6398 | Yes |
| 10 | CREBBP | CREBBP Entrez, Source | CREB binding protein (Rubinstein-Taybi syndrome) | 2722 | 0.062 | 0.6662 | Yes |
| 11 | CHRNA7 | CHRNA7 Entrez, Source | cholinergic receptor, nicotinic, alpha 7 | 4274 | 0.028 | 0.5640 | No |
| 12 | SMAD3 | SMAD3 Entrez, Source | SMAD, mothers against DPP homolog 3 (Drosophila) | 4720 | 0.020 | 0.5405 | No |
| 13 | CHRNA4 | CHRNA4 Entrez, Source | cholinergic receptor, nicotinic, alpha 4 | 4991 | 0.015 | 0.5281 | No |
| 14 | NARFL | NARFL Entrez, Source | nuclear prelamin A recognition factor-like | 5169 | 0.012 | 0.5209 | No |
| 15 | CHRNB2 | CHRNB2 Entrez, Source | cholinergic receptor, nicotinic, beta 2 (neuronal) | 5551 | 0.007 | 0.4957 | No |
| 16 | CXCR4 | CXCR4 Entrez, Source | chemokine (C-X-C motif) receptor 4 | 5981 | 0.000 | 0.4637 | No |
| 17 | ARNT2 | ARNT2 Entrez, Source | aryl-hydrocarbon receptor nuclear translocator 2 | 6133 | -0.002 | 0.4534 | No |
| 18 | MT3 | MT3 Entrez, Source | metallothionein 3 (growth inhibitory factor (neurotrophic)) | 6193 | -0.003 | 0.4505 | No |
| 19 | SMAD4 | SMAD4 Entrez, Source | SMAD, mothers against DPP homolog 4 (Drosophila) | 7113 | -0.017 | 0.3901 | No |
| 20 | HIF1A | HIF1A Entrez, Source | hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | 7751 | -0.027 | 0.3559 | No |
| 21 | EP300 | EP300 Entrez, Source | E1A binding protein p300 | 8660 | -0.041 | 0.3088 | No |
| 22 | NF1 | NF1 Entrez, Source | neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) | 10739 | -0.084 | 0.1954 | No |
