Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_48h |
| GeneSet | RNA_TRANSCRIPTION_REACTOME |
| Enrichment Score (ES) | -0.5675829 |
| Normalized Enrichment Score (NES) | -1.5554783 |
| Nominal p-value | 0.036398467 |
| FDR q-value | 0.17295492 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | GTF2E1 | GTF2E1 Entrez, Source | general transcription factor IIE, polypeptide 1, alpha 56kDa | 3328 | 0.047 | -0.2044 | No |
| 2 | TAF9 | TAF9 Entrez, Source | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa | 3757 | 0.037 | -0.2001 | No |
| 3 | ILK | ILK Entrez, Source | integrin-linked kinase | 3923 | 0.034 | -0.1792 | No |
| 4 | GTF2B | GTF2B Entrez, Source | general transcription factor IIB | 4065 | 0.032 | -0.1591 | No |
| 5 | POLR2F | POLR2F Entrez, Source | polymerase (RNA) II (DNA directed) polypeptide F | 5278 | 0.010 | -0.2399 | No |
| 6 | CDK7 | CDK7 Entrez, Source | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | 5591 | 0.006 | -0.2576 | No |
| 7 | MNAT1 | MNAT1 Entrez, Source | menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) | 5616 | 0.005 | -0.2541 | No |
| 8 | POLR2G | POLR2G Entrez, Source | polymerase (RNA) II (DNA directed) polypeptide G | 5947 | 0.001 | -0.2780 | No |
| 9 | TBP | TBP Entrez, Source | TATA box binding protein | 6398 | -0.006 | -0.3056 | No |
| 10 | GTF2A2 | GTF2A2 Entrez, Source | general transcription factor IIA, 2, 12kDa | 6756 | -0.012 | -0.3212 | No |
| 11 | ERCC3 | ERCC3 Entrez, Source | excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) | 7085 | -0.016 | -0.3298 | No |
| 12 | POLR2C | POLR2C Entrez, Source | polymerase (RNA) II (DNA directed) polypeptide C, 33kDa | 7301 | -0.020 | -0.3269 | No |
| 13 | TAF6 | TAF6 Entrez, Source | TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa | 7744 | -0.027 | -0.3343 | No |
| 14 | POLR3D | POLR3D Entrez, Source | polymerase (RNA) III (DNA directed) polypeptide D, 44kDa | 10853 | -0.087 | -0.4831 | Yes |
| 15 | CCNH | CCNH Entrez, Source | cyclin H | 10928 | -0.089 | -0.4024 | Yes |
| 16 | POLR1A | POLR1A Entrez, Source | polymerase (RNA) I polypeptide A, 194kDa | 10957 | -0.089 | -0.3176 | Yes |
| 17 | GTF2H4 | GTF2H4 Entrez, Source | general transcription factor IIH, polypeptide 4, 52kDa | 12050 | -0.129 | -0.2743 | Yes |
| 18 | POLR1B | POLR1B Entrez, Source | polymerase (RNA) I polypeptide B, 128kDa | 12791 | -0.183 | -0.1515 | Yes |
| 19 | GTF2F2 | GTF2F2 Entrez, Source | general transcription factor IIF, polypeptide 2, 30kDa | 12888 | -0.198 | 0.0341 | Yes |
