Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_48h
GeneSetTGCTTTG,MIR-330
Enrichment Score (ES)-0.30546054
Normalized Enrichment Score (NES)-1.2613751
Nominal p-value0.077747986
FDR q-value0.5213534
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: TGCTTTG,MIR-330   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GPM6AGPM6A
Entrez,  Source
glycoprotein M6A1300.4660.0300No
2ITM2CITM2C
Entrez,  Source
integral membrane protein 2C4910.2310.0224No
3CCND3CCND3
Entrez,  Source
cyclin D36430.1980.0279No
4TRIM3TRIM3
Entrez,  Source
tripartite motif-containing 38540.1620.0258No
5GPHNGPHN
Entrez,  Source
gephyrin8680.1600.0385No
6TRAK2TRAK2
Entrez,  Source
trafficking protein, kinesin binding 28820.1580.0510No
7DPYSL3DPYSL3
Entrez,  Source
dihydropyrimidinase-like 39170.1540.0616No
8IRX2IRX2
Entrez,  Source
iroquois homeobox protein 211570.1320.0547No
9SYT7SYT7
Entrez,  Source
synaptotagmin VII12190.1260.0609No
10MYH10MYH10
Entrez,  Source
myosin, heavy chain 10, non-muscle13050.1190.0647No
11RUNX3RUNX3
Entrez,  Source
runt-related transcription factor 316570.1000.0466No
12BIRC4BIRC4
Entrez,  Source
baculoviral IAP repeat-containing 416640.0990.0546No
13DCXDCX
Entrez,  Source
doublecortex; lissencephaly, X-linked (doublecortin)17080.0970.0596No
14CEP170CEP170
Entrez,  Source
centrosomal protein 170kDa18230.0920.0588No
15RUNX2RUNX2
Entrez,  Source
runt-related transcription factor 218740.0900.0627No
16MTCH1MTCH1
Entrez,  Source
mitochondrial carrier homolog 1 (C. elegans)21490.0790.0487No
17FRKFRK
Entrez,  Source
fyn-related kinase23440.0730.0402No
18ADD3ADD3
Entrez,  Source
adducin 3 (gamma)24340.0700.0394No
19D4S234ED4S234E
Entrez,  Source
-25070.0670.0397No
20PHC2PHC2
Entrez,  Source
polyhomeotic homolog 2 (Drosophila)25590.0660.0414No
21TLOC1TLOC1
Entrez,  Source
translocation protein 125710.0660.0462No
22PSCD3PSCD3
Entrez,  Source
pleckstrin homology, Sec7 and coiled-coil domains 325900.0650.0504No
23DAG1DAG1
Entrez,  Source
dystroglycan 1 (dystrophin-associated glycoprotein 1)26100.0650.0545No
24BTG1BTG1
Entrez,  Source
B-cell translocation gene 1, anti-proliferative26290.0640.0586No
25CREBBPCREBBP
Entrez,  Source
CREB binding protein (Rubinstein-Taybi syndrome)27220.0620.0569No
26SH3GL2SH3GL2
Entrez,  Source
SH3-domain GRB2-like 229780.0550.0423No
27TGFBR3TGFBR3
Entrez,  Source
transforming growth factor, beta receptor III (betaglycan, 300kDa)30340.0540.0427No
28BICD2BICD2
Entrez,  Source
bicaudal D homolog 2 (Drosophila)30880.0520.0431No
29ARMCX6ARMCX6
Entrez,  Source
armadillo repeat containing, X-linked 631360.0510.0439No
30NR4A3NR4A3
Entrez,  Source
nuclear receptor subfamily 4, group A, member 334170.0450.0265No
31CHPCHP
Entrez,  Source
-34380.0440.0288No
32PDGFDPDGFD
Entrez,  Source
platelet derived growth factor D34420.0440.0323No
33PTGFRNPTGFRN
Entrez,  Source
prostaglandin F2 receptor negative regulator34550.0440.0352No
34CLCN5CLCN5
Entrez,  Source
chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease)34700.0440.0379No
35LUZP1LUZP1
Entrez,  Source
leucine zipper protein 134810.0430.0408No
36HDAC5HDAC5
Entrez,  Source
histone deacetylase 537420.0380.0243No
37MTPNMTPN
Entrez,  Source
myotrophin38100.0360.0223No
38DPP10DPP10
Entrez,  Source
dipeptidyl-peptidase 1038380.0360.0234No
39SLC4A10SLC4A10
Entrez,  Source
solute carrier family 4, sodium bicarbonate transporter-like, member 1038920.0350.0223No
40RND3RND3
Entrez,  Source
Rho family GTPase 339370.0340.0219No
41PCAFPCAF
Entrez,  Source
p300/CBP-associated factor39620.0340.0229No
42GRID1GRID1
Entrez,  Source
glutamate receptor, ionotropic, delta 139870.0330.0239No
43EGR4EGR4
Entrez,  Source
early growth response 440030.0330.0256No
44KCNA6KCNA6
Entrez,  Source
potassium voltage-gated channel, shaker-related subfamily, member 640660.0320.0236No
45TEAD1TEAD1
Entrez,  Source
TEA domain family member 1 (SV40 transcriptional enhancer factor)42100.0290.0152No
46GALNT7GALNT7
Entrez,  Source
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)42590.0280.0140No
47BTRCBTRC
Entrez,  Source
beta-transducin repeat containing43960.0250.0059No
48POU3F1POU3F1
Entrez,  Source
POU domain, class 3, transcription factor 144910.0240.0007No
49SYT5SYT5
Entrez,  Source
synaptotagmin V45260.0230.0001No
50PPP1R1BPPP1R1B
Entrez,  Source
protein phosphatase 1, regulatory (inhibitor) subunit 1B (dopamine and cAMP regulated phosphoprotein, DARPP-32)45560.022-0.0002No
51PPM1BPPM1B
Entrez,  Source
protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform46850.020-0.0081No
52FNTBFNTB
Entrez,  Source
farnesyltransferase, CAAX box, beta47440.019-0.0109No
53PLCB1PLCB1
Entrez,  Source
phospholipase C, beta 1 (phosphoinositide-specific)47640.019-0.0107No
54TFEBTFEB
Entrez,  Source
transcription factor EB48730.017-0.0174No
55CMPKCMPK
Entrez,  Source
cytidylate kinase51020.013-0.0336No
56CSNK1G3CSNK1G3
Entrez,  Source
casein kinase 1, gamma 352350.011-0.0426No
57PTPN4PTPN4
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)52550.011-0.0431No
58PCDHA11PCDHA11
Entrez,  Source
protocadherin alpha 1154270.008-0.0554No
59PCDHA4PCDHA4
Entrez,  Source
protocadherin alpha 454820.008-0.0588No
60PICALMPICALM
Entrez,  Source
phosphatidylinositol binding clathrin assembly protein56360.005-0.0700No
61E2F1E2F1
Entrez,  Source
E2F transcription factor 156690.005-0.0720No
62FYTTD1FYTTD1
Entrez,  Source
forty-two-three domain containing 158310.002-0.0840No
63MAP2K5MAP2K5
Entrez,  Source
mitogen-activated protein kinase kinase 558870.002-0.0880No
64STAU1STAU1
Entrez,  Source
staufen, RNA binding protein, homolog 1 (Drosophila)59080.001-0.0894No
65GRIN2BGRIN2B
Entrez,  Source
glutamate receptor, ionotropic, N-methyl D-aspartate 2B6060-0.001-0.1008No
66ACBD3ACBD3
Entrez,  Source
acyl-Coenzyme A binding domain containing 36131-0.002-0.1059No
67STXBP3STXBP3
Entrez,  Source
syntaxin binding protein 36260-0.004-0.1153No
68ESR1ESR1
Entrez,  Source
estrogen receptor 16300-0.005-0.1179No
69MBNL1MBNL1
Entrez,  Source
muscleblind-like (Drosophila)6403-0.006-0.1250No
70GCGGCG
Entrez,  Source
glucagon6455-0.007-0.1283No
71KCNIP2KCNIP2
Entrez,  Source
Kv channel interacting protein 26562-0.009-0.1356No
72ARHGEF9ARHGEF9
Entrez,  Source
Cdc42 guanine nucleotide exchange factor (GEF) 96676-0.010-0.1433No
73MTMR9MTMR9
Entrez,  Source
myotubularin related protein 96787-0.012-0.1506No
74RAB6ARAB6A
Entrez,  Source
RAB6A, member RAS oncogene family6910-0.014-0.1587No
75STRBPSTRBP
Entrez,  Source
spermatid perinuclear RNA binding protein6915-0.014-0.1578No
76EIF4EEIF4E
Entrez,  Source
eukaryotic translation initiation factor 4E6949-0.014-0.1591No
77PCDHA13PCDHA13
Entrez,  Source
protocadherin alpha 137173-0.018-0.1745No
78GRM5GRM5
Entrez,  Source
glutamate receptor, metabotropic 57203-0.018-0.1751No
79SLC17A6SLC17A6
Entrez,  Source
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 67230-0.019-0.1755No
80CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 67356-0.020-0.1832No
81SLC25A3SLC25A3
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 37388-0.021-0.1838No
82DHX40DHX40
Entrez,  Source
DEAH (Asp-Glu-Ala-His) box polypeptide 407529-0.023-0.1925No
83SOX11SOX11
Entrez,  Source
SRY (sex determining region Y)-box 117530-0.023-0.1905No
84MRFAP1MRFAP1
Entrez,  Source
Mof4 family associated protein 17544-0.023-0.1895No
85GNL1GNL1
Entrez,  Source
guanine nucleotide binding protein-like 17550-0.023-0.1879No
86AP2M1AP2M1
Entrez,  Source
adaptor-related protein complex 2, mu 1 subunit7615-0.024-0.1906No
87HIVEP2HIVEP2
Entrez,  Source
human immunodeficiency virus type I enhancer binding protein 27650-0.025-0.1911No
88PDCD4PDCD4
Entrez,  Source
programmed cell death 4 (neoplastic transformation inhibitor)7707-0.026-0.1931No
89AGTR2AGTR2
Entrez,  Source
angiotensin II receptor, type 27888-0.029-0.2043No
90GNAO1GNAO1
Entrez,  Source
guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O7919-0.029-0.2041No
91DLX1DLX1
Entrez,  Source
distal-less homeobox 17960-0.030-0.2045No
92ACVR1ACVR1
Entrez,  Source
activin A receptor, type I7971-0.030-0.2027No
93SOSTDC1SOSTDC1
Entrez,  Source
sclerostin domain containing 18420-0.038-0.2334No
94MAPK1MAPK1
Entrez,  Source
mitogen-activated protein kinase 18472-0.038-0.2340No
95PCYT1BPCYT1B
Entrez,  Source
phosphate cytidylyltransferase 1, choline, beta8490-0.039-0.2320No
96RAP2ARAP2A
Entrez,  Source
RAP2A, member of RAS oncogene family8557-0.040-0.2336No
97MTDHMTDH
Entrez,  Source
metadherin8564-0.040-0.2306No
98SP4SP4
Entrez,  Source
Sp4 transcription factor8627-0.041-0.2318No
99RAP1ARAP1A
Entrez,  Source
RAP1A, member of RAS oncogene family8724-0.043-0.2355No
100GATAD2BGATAD2B
Entrez,  Source
GATA zinc finger domain containing 2B8739-0.043-0.2329No
101LYNLYN
Entrez,  Source
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog9007-0.047-0.2491No
102SLC8A3SLC8A3
Entrez,  Source
solute carrier family 8 (sodium-calcium exchanger), member 39258-0.052-0.2636No
103NF2NF2
Entrez,  Source
neurofibromin 2 (bilateral acoustic neuroma)9310-0.053-0.2630No
104AMPHAMPH
Entrez,  Source
amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen)9358-0.053-0.2620No
105PCMT1PCMT1
Entrez,  Source
protein-L-isoaspartate (D-aspartate) O-methyltransferase9378-0.054-0.2588No
106IFIT1IFIT1
Entrez,  Source
interferon-induced protein with tetratricopeptide repeats 19511-0.056-0.2640No
107DCAMKL1DCAMKL1
Entrez,  Source
doublecortin and CaM kinase-like 19719-0.060-0.2746No
108GRIA3GRIA3
Entrez,  Source
glutamate receptor, ionotrophic, AMPA 39917-0.065-0.2840No
109APCAPC
Entrez,  Source
adenomatosis polyposis coli10080-0.068-0.2904No
110DEKDEK
Entrez,  Source
DEK oncogene (DNA binding)10155-0.069-0.2901No
111ATP2B1ATP2B1
Entrez,  Source
ATPase, Ca++ transporting, plasma membrane 110314-0.073-0.2959No
112PUM2PUM2
Entrez,  Source
pumilio homolog 2 (Drosophila)10315-0.073-0.2896No
113BMP2KBMP2K
Entrez,  Source
BMP2 inducible kinase10329-0.073-0.2844No
114METAP2METAP2
Entrez,  Source
methionyl aminopeptidase 210345-0.074-0.2792No
115ATP2B2ATP2B2
Entrez,  Source
ATPase, Ca++ transporting, plasma membrane 210683-0.082-0.2978No
116FIGFFIGF
Entrez,  Source
c-fos induced growth factor (vascular endothelial growth factor D)10740-0.084-0.2948No
117MLLT10MLLT10
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1010881-0.088-0.2980Yes
118RNF126RNF126
Entrez,  Source
ring finger protein 12610907-0.088-0.2923Yes
119PAFAH1B1PAFAH1B1
Entrez,  Source
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa10930-0.089-0.2864Yes
120FGFR1FGFR1
Entrez,  Source
fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome)10976-0.090-0.2821Yes
121NRXN3NRXN3
Entrez,  Source
neurexin 311130-0.094-0.2857Yes
122PRKCB1PRKCB1
Entrez,  Source
protein kinase C, beta 111192-0.096-0.2822Yes
123PRR3PRR3
Entrez,  Source
proline rich 311198-0.096-0.2744Yes
124TPM3TPM3
Entrez,  Source
tropomyosin 311208-0.096-0.2668Yes
125SHOX2SHOX2
Entrez,  Source
short stature homeobox 211372-0.101-0.2706Yes
126NPTXRNPTXR
Entrez,  Source
neuronal pentraxin receptor11606-0.110-0.2789Yes
127NCOA2NCOA2
Entrez,  Source
nuclear receptor coactivator 211659-0.111-0.2733Yes
128EFNA3EFNA3
Entrez,  Source
ephrin-A311688-0.113-0.2658Yes
129OGTOGT
Entrez,  Source
O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)11749-0.115-0.2605Yes
130PDLIM5PDLIM5
Entrez,  Source
PDZ and LIM domain 511910-0.122-0.2622Yes
131TRIP12TRIP12
Entrez,  Source
thyroid hormone receptor interactor 1211969-0.125-0.2560Yes
132CSNK1A1CSNK1A1
Entrez,  Source
casein kinase 1, alpha 112054-0.129-0.2513Yes
133TARDBPTARDBP
Entrez,  Source
TAR DNA binding protein12292-0.142-0.2572Yes
134QKIQKI
Entrez,  Source
quaking homolog, KH domain RNA binding (mouse)12354-0.146-0.2493Yes
135BMPR2BMPR2
Entrez,  Source
bone morphogenetic protein receptor, type II (serine/threonine kinase)12471-0.153-0.2451Yes
136MTM1MTM1
Entrez,  Source
myotubularin 112542-0.158-0.2369Yes
137SFRS10SFRS10
Entrez,  Source
splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)12549-0.158-0.2238Yes
138RBM12RBM12
Entrez,  Source
RNA binding motif protein 1212622-0.165-0.2151Yes
139ETF1ETF1
Entrez,  Source
eukaryotic translation termination factor 112680-0.171-0.2049Yes
140NUPL1NUPL1
Entrez,  Source
nucleoporin like 112703-0.173-0.1917Yes
141TCF12TCF12
Entrez,  Source
transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)12718-0.175-0.1778Yes
142NDNL2NDNL2
Entrez,  Source
necdin-like 212742-0.177-0.1644Yes
143MAP2K1MAP2K1
Entrez,  Source
mitogen-activated protein kinase kinase 112766-0.180-0.1508Yes
144DYRK1ADYRK1A
Entrez,  Source
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A12773-0.181-0.1358Yes
145ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein12777-0.181-0.1205Yes
146HNRPUHNRPU
Entrez,  Source
heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)12874-0.196-0.1111Yes
147TDGTDG
Entrez,  Source
thymine-DNA glycosylase12893-0.199-0.0955Yes
148DICER1DICER1
Entrez,  Source
Dicer1, Dcr-1 homolog (Drosophila)12970-0.213-0.0830Yes
149FNBP4FNBP4
Entrez,  Source
formin binding protein 413108-0.255-0.0716Yes
150GPAMGPAM
Entrez,  Source
glycerol-3-phosphate acyltransferase, mitochondrial13110-0.256-0.0498Yes
151KIF1BKIF1B
Entrez,  Source
kinesin family member 1B13231-0.325-0.0311Yes
152OTUD4OTUD4
Entrez,  Source
OTU domain containing 413303-0.4620.0030Yes
Table: GSEA details [plain text format]



Fig 2: TGCTTTG,MIR-330   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: TGCTTTG,MIR-330: Random ES distribution   
Gene set null distribution of ES for TGCTTTG,MIR-330