Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TGFBETA_C2_UP |
| Enrichment Score (ES) | 0.75524175 |
| Normalized Enrichment Score (NES) | 1.89026 |
| Nominal p-value | 0.0018832391 |
| FDR q-value | 0.013510173 |
| FWER p-Value | 0.654 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.3631 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 21 | 0.785 | 0.6095 | Yes |
| 3 | MARCKSL1 | MARCKSL1 Entrez, Source | MARCKS-like 1 | 166 | 0.428 | 0.7336 | Yes |
| 4 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 759 | 0.176 | 0.7446 | Yes |
| 5 | WNT2B | WNT2B Entrez, Source | wingless-type MMTV integration site family, member 2B | 1284 | 0.121 | 0.7434 | Yes |
| 6 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 1566 | 0.104 | 0.7552 | Yes |
| 7 | FN1 | FN1 Entrez, Source | fibronectin 1 | 2715 | 0.062 | 0.6887 | No |
| 8 | MMP14 | MMP14 Entrez, Source | matrix metallopeptidase 14 (membrane-inserted) | 4808 | 0.018 | 0.5375 | No |
| 9 | DVL1 | DVL1 Entrez, Source | dishevelled, dsh homolog 1 (Drosophila) | 5611 | 0.005 | 0.4791 | No |
| 10 | LRP1 | LRP1 Entrez, Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 5770 | 0.003 | 0.4682 | No |
| 11 | CDH6 | CDH6 Entrez, Source | cadherin 6, type 2, K-cadherin (fetal kidney) | 6129 | -0.002 | 0.4420 | No |
| 12 | JUP | JUP Entrez, Source | junction plakoglobin | 6593 | -0.009 | 0.4100 | No |
| 13 | MMP3 | MMP3 Entrez, Source | matrix metallopeptidase 3 (stromelysin 1, progelatinase) | 10103 | -0.068 | 0.1683 | No |
| 14 | ITGB2 | ITGB2 Entrez, Source | integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 10432 | -0.076 | 0.1675 | No |
| 15 | ARHGDIA | ARHGDIA Entrez, Source | Rho GDP dissociation inhibitor (GDI) alpha | 10450 | -0.076 | 0.1903 | No |
| 16 | ICAM1 | ICAM1 Entrez, Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 10770 | -0.085 | 0.1930 | No |
