Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TSA_HEPATOMA_CANCER_UP |
| Enrichment Score (ES) | 0.7677716 |
| Normalized Enrichment Score (NES) | 2.1779501 |
| Nominal p-value | 0.0 |
| FDR q-value | 4.117625E-4 |
| FWER p-Value | 0.0050 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.2351 | Yes |
| 2 | CTGF | CTGF Entrez, Source | connective tissue growth factor | 27 | 0.757 | 0.3880 | Yes |
| 3 | TIMP2 | TIMP2 Entrez, Source | TIMP metallopeptidase inhibitor 2 | 28 | 0.756 | 0.5423 | Yes |
| 4 | CD9 | CD9 Entrez, Source | CD9 molecule | 283 | 0.320 | 0.5887 | Yes |
| 5 | VEGFC | VEGFC Entrez, Source | vascular endothelial growth factor C | 778 | 0.173 | 0.5869 | Yes |
| 6 | TGFB1 | TGFB1 Entrez, Source | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 821 | 0.166 | 0.6177 | Yes |
| 7 | JUNB | JUNB Entrez, Source | jun B proto-oncogene | 861 | 0.161 | 0.6477 | Yes |
| 8 | MMP11 | MMP11 Entrez, Source | matrix metallopeptidase 11 (stromelysin 3) | 1078 | 0.138 | 0.6596 | Yes |
| 9 | NGFR | NGFR Entrez, Source | nerve growth factor receptor (TNFR superfamily, member 16) | 1117 | 0.135 | 0.6842 | Yes |
| 10 | CAV2 | CAV2 Entrez, Source | caveolin 2 | 1186 | 0.129 | 0.7055 | Yes |
| 11 | VTN | VTN Entrez, Source | vitronectin | 1239 | 0.124 | 0.7270 | Yes |
| 12 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 1566 | 0.104 | 0.7238 | Yes |
| 13 | ARHGDIB | ARHGDIB Entrez, Source | Rho GDP dissociation inhibitor (GDI) beta | 1774 | 0.094 | 0.7275 | Yes |
| 14 | HBEGF | HBEGF Entrez, Source | heparin-binding EGF-like growth factor | 1849 | 0.091 | 0.7404 | Yes |
| 15 | IGFBP2 | IGFBP2 Entrez, Source | insulin-like growth factor binding protein 2, 36kDa | 1859 | 0.090 | 0.7582 | Yes |
| 16 | BAD | BAD Entrez, Source | BCL2-antagonist of cell death | 1967 | 0.086 | 0.7678 | Yes |
| 17 | PDGFRB | PDGFRB Entrez, Source | platelet-derived growth factor receptor, beta polypeptide | 2644 | 0.064 | 0.7300 | No |
| 18 | BSG | BSG Entrez, Source | basigin (Ok blood group) | 2772 | 0.061 | 0.7329 | No |
| 19 | ANK1 | ANK1 Entrez, Source | ankyrin 1, erythrocytic | 3656 | 0.040 | 0.6747 | No |
| 20 | LUM | LUM Entrez, Source | lumican | 4533 | 0.023 | 0.6135 | No |
| 21 | FASTK | FASTK Entrez, Source | Fas-activated serine/threonine kinase | 4763 | 0.019 | 0.6002 | No |
| 22 | PLA2G6 | PLA2G6 Entrez, Source | phospholipase A2, group VI (cytosolic, calcium-independent) | 5121 | 0.013 | 0.5760 | No |
| 23 | JUP | JUP Entrez, Source | junction plakoglobin | 6593 | -0.009 | 0.4674 | No |
| 24 | CDKN2C | CDKN2C Entrez, Source | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | 7011 | -0.015 | 0.4392 | No |
| 25 | FBN2 | FBN2 Entrez, Source | fibrillin 2 (congenital contractural arachnodactyly) | 7354 | -0.020 | 0.4176 | No |
| 26 | CD8B | CD8B Entrez, Source | CD8b molecule | 7771 | -0.027 | 0.3919 | No |
| 27 | QSCN6 | QSCN6 Entrez, Source | quiescin Q6 | 7929 | -0.030 | 0.3861 | No |
| 28 | CASP9 | CASP9 Entrez, Source | caspase 9, apoptosis-related cysteine peptidase | 8297 | -0.036 | 0.3659 | No |
| 29 | ITGA7 | ITGA7 Entrez, Source | integrin, alpha 7 | 9876 | -0.064 | 0.2603 | No |
