Details for gene set V$ATF1

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in class	double_gel_8d
GeneSet	V$ATF1_Q6
Enrichment Score (ES)	0.48487118
Normalized Enrichment Score (NES)	1.8125873
Nominal p-value	0.0
FDR q-value	0.023045538
FWER p-Value	0.947

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	9	0.936	0.0866	Yes
2	CLDN7	CLDN7 Entrez, Source	claudin 7	24	0.780	0.1583	Yes
3	PCK1	PCK1 Entrez, Source	phosphoenolpyruvate carboxykinase 1 (soluble)	35	0.711	0.2239	Yes
4	MAF	MAF Entrez, Source	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	43	0.675	0.2863	Yes
5	HS3ST2	HS3ST2 Entrez, Source	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	219	0.370	0.3075	Yes
6	NCALD	NCALD Entrez, Source	neurocalcin delta	278	0.323	0.3332	Yes
7	FOXP1	FOXP1 Entrez, Source	forkhead box P1	375	0.270	0.3512	Yes
8	TNFRSF12A	TNFRSF12A Entrez, Source	tumor necrosis factor receptor superfamily, member 12A	489	0.231	0.3642	Yes
9	SPRED2	SPRED2 Entrez, Source	sprouty-related, EVH1 domain containing 2	528	0.221	0.3819	Yes
10	PDGFA	PDGFA Entrez, Source	platelet-derived growth factor alpha polypeptide	544	0.218	0.4011	Yes
11	AQP7	AQP7 Entrez, Source	aquaporin 7	548	0.217	0.4211	Yes
12	COL1A1	COL1A1 Entrez, Source	collagen, type I, alpha 1	673	0.190	0.4295	Yes
13	FLT1	FLT1 Entrez, Source	fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	789	0.172	0.4368	Yes
14	ARG2	ARG2 Entrez, Source	arginase, type II	799	0.170	0.4519	Yes
15	LMO4	LMO4 Entrez, Source	LIM domain only 4	808	0.169	0.4671	Yes
16	BNIP3L	BNIP3L Entrez, Source	BCL2/adenovirus E1B 19kDa interacting protein 3-like	921	0.154	0.4729	Yes
17	PAK1	PAK1 Entrez, Source	p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)	1034	0.144	0.4778	Yes
18	SLC38A1	SLC38A1 Entrez, Source	solute carrier family 38, member 1	1109	0.135	0.4849	Yes
19	CDX2	CDX2 Entrez, Source	caudal type homeobox transcription factor 2	1384	0.114	0.4748	No
20	PCSK1	PCSK1 Entrez, Source	proprotein convertase subtilisin/kexin type 1	1629	0.101	0.4658	No
21	HSD11B1	HSD11B1 Entrez, Source	hydroxysteroid (11-beta) dehydrogenase 1	1720	0.096	0.4680	No
22	MAP1LC3A	MAP1LC3A Entrez, Source	microtubule-associated protein 1 light chain 3 alpha	1741	0.095	0.4754	No
23	PER1	PER1 Entrez, Source	period homolog 1 (Drosophila)	1956	0.087	0.4673	No
24	MAPK10	MAPK10 Entrez, Source	mitogen-activated protein kinase 10	2176	0.078	0.4580	No
25	TPM4	TPM4 Entrez, Source	tropomyosin 4	2205	0.077	0.4631	No
26	SNF1LK	SNF1LK Entrez, Source	SNF1-like kinase	2345	0.073	0.4593	No
27	BRE	BRE Entrez, Source	brain and reproductive organ-expressed (TNFRSF1A modulator)	2350	0.072	0.4658	No
28	CSF3	CSF3 Entrez, Source	colony stimulating factor 3 (granulocyte)	2483	0.069	0.4622	No
29	CSF2	CSF2 Entrez, Source	colony stimulating factor 2 (granulocyte-macrophage)	2558	0.066	0.4628	No
30	CCND1	CCND1 Entrez, Source	cyclin D1	2668	0.063	0.4604	No
31	ANGPT1	ANGPT1 Entrez, Source	angiopoietin 1	2782	0.061	0.4575	No
32	TRIB1	TRIB1 Entrez, Source	tribbles homolog 1 (Drosophila)	2792	0.060	0.4624	No
33	RNF44	RNF44 Entrez, Source	ring finger protein 44	2838	0.059	0.4646	No
34	MAGED2	MAGED2 Entrez, Source	melanoma antigen family D, 2	3164	0.050	0.4447	No
35	ELL2	ELL2 Entrez, Source	elongation factor, RNA polymerase II, 2	3352	0.046	0.4349	No
36	MCAM	MCAM Entrez, Source	melanoma cell adhesion molecule	3354	0.046	0.4391	No
37	GNB4	GNB4 Entrez, Source	guanine nucleotide binding protein (G protein), beta polypeptide 4	3549	0.042	0.4283	No
38	GDNF	GDNF Entrez, Source	glial cell derived neurotrophic factor	3737	0.038	0.4177	No
39	JUND	JUND Entrez, Source	jun D proto-oncogene	3846	0.036	0.4129	No
40	DOK1	DOK1 Entrez, Source	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	3881	0.035	0.4136	No
41	ELOVL5	ELOVL5 Entrez, Source	ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)	4037	0.032	0.4049	No
42	GPM6B	GPM6B Entrez, Source	glycoprotein M6B	4058	0.032	0.4063	No
43	KCNA6	KCNA6 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 6	4066	0.032	0.4087	No
44	ATP6V0C	ATP6V0C Entrez, Source	ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	4083	0.031	0.4104	No
45	GABRG2	GABRG2 Entrez, Source	gamma-aminobutyric acid (GABA) A receptor, gamma 2	4437	0.025	0.3860	No
46	PARD6A	PARD6A Entrez, Source	par-6 partitioning defective 6 homolog alpha (C.elegans)	4580	0.022	0.3773	No
47	SYT13	SYT13 Entrez, Source	synaptotagmin XIII	4642	0.021	0.3747	No
48	CREM	CREM Entrez, Source	cAMP responsive element modulator	4794	0.019	0.3650	No
49	DNTTIP1	DNTTIP1 Entrez, Source	deoxynucleotidyltransferase, terminal, interacting protein 1	5076	0.014	0.3450	No
50	WISP1	WISP1 Entrez, Source	WNT1 inducible signaling pathway protein 1	5281	0.010	0.3306	No
51	LDHA	LDHA Entrez, Source	lactate dehydrogenase A	5536	0.007	0.3120	No
52	CDC42	CDC42 Entrez, Source	cell division cycle 42 (GTP binding protein, 25kDa)	5548	0.007	0.3118	No
53	SNAP25	SNAP25 Entrez, Source	synaptosomal-associated protein, 25kDa	5609	0.006	0.3078	No
54	SCG2	SCG2 Entrez, Source	secretogranin II (chromogranin C)	5614	0.005	0.3080	No
55	CBX8	CBX8 Entrez, Source	chromobox homolog 8 (Pc class homolog, Drosophila)	5675	0.005	0.3039	No
56	EHD1	EHD1 Entrez, Source	EH-domain containing 1	5701	0.004	0.3024	No
57	IKBKB	IKBKB Entrez, Source	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	5717	0.004	0.3017	No
58	HOXA4	HOXA4 Entrez, Source	homeobox A4	5806	0.003	0.2953	No
59	ADARB2	ADARB2 Entrez, Source	adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)	5942	0.001	0.2851	No
60	STC2	STC2 Entrez, Source	stanniocalcin 2	5955	0.001	0.2843	No
61	CALD1	CALD1 Entrez, Source	caldesmon 1	5970	0.001	0.2833	No
62	CD37	CD37 Entrez, Source	CD37 molecule	6038	-0.001	0.2783	No
63	TOP1	TOP1 Entrez, Source	topoisomerase (DNA) I	6078	-0.001	0.2754	No
64	USP48	USP48 Entrez, Source	ubiquitin specific peptidase 48	6200	-0.003	0.2666	No
65	ARL6IP2	ARL6IP2 Entrez, Source	ADP-ribosylation factor-like 6 interacting protein 2	6315	-0.005	0.2584	No
66	FOXD3	FOXD3 Entrez, Source	forkhead box D3	6499	-0.008	0.2453	No
67	KCNIP2	KCNIP2 Entrez, Source	Kv channel interacting protein 2	6562	-0.009	0.2414	No
68	NFIL3	NFIL3 Entrez, Source	nuclear factor, interleukin 3 regulated	6595	-0.009	0.2398	No
69	TH	TH Entrez, Source	tyrosine hydroxylase	6761	-0.012	0.2284	No
70	UCN	UCN Entrez, Source	urocortin	6972	-0.015	0.2139	No
71	EIF4A2	EIF4A2 Entrez, Source	eukaryotic translation initiation factor 4A, isoform 2	7219	-0.018	0.1971	No
72	GRASP	GRASP Entrez, Source	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	7221	-0.019	0.1987	No
73	FGF6	FGF6 Entrez, Source	fibroblast growth factor 6	7269	-0.019	0.1969	No
74	NRXN1	NRXN1 Entrez, Source	neurexin 1	7337	-0.020	0.1938	No
75	CHGB	CHGB Entrez, Source	chromogranin B (secretogranin 1)	7364	-0.020	0.1937	No
76	SOX11	SOX11 Entrez, Source	SRY (sex determining region Y)-box 11	7530	-0.023	0.1834	No
77	ID1	ID1 Entrez, Source	inhibitor of DNA binding 1, dominant negative helix-loop-helix protein	7557	-0.023	0.1836	No
78	NOVA1	NOVA1 Entrez, Source	neuro-oncological ventral antigen 1	7658	-0.025	0.1784	No
79	THRA	THRA Entrez, Source	thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)	7692	-0.026	0.1783	No
80	EEF2	EEF2 Entrez, Source	eukaryotic translation elongation factor 2	7846	-0.028	0.1693	No
81	PPARGC1B	PPARGC1B Entrez, Source	peroxisome proliferative activated receptor, gamma, coactivator 1, beta	7905	-0.029	0.1677	No
82	LHX1	LHX1 Entrez, Source	LIM homeobox 1	7941	-0.030	0.1678	No
83	PDE4D	PDE4D Entrez, Source	phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)	7982	-0.030	0.1676	No
84	ESRRG	ESRRG Entrez, Source	estrogen-related receptor gamma	8140	-0.033	0.1588	No
85	VGF	VGF Entrez, Source	VGF nerve growth factor inducible	8355	-0.037	0.1461	No
86	PDE1A	PDE1A Entrez, Source	phosphodiesterase 1A, calmodulin-dependent	8459	-0.038	0.1418	No
87	PTPRU	PTPRU Entrez, Source	protein tyrosine phosphatase, receptor type, U	8514	-0.039	0.1414	No
88	DYRK3	DYRK3 Entrez, Source	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	8702	-0.042	0.1312	No
89	SST	SST Entrez, Source	somatostatin	8868	-0.045	0.1229	No
90	RNPS1	RNPS1 Entrez, Source	RNA binding protein S1, serine-rich domain	9038	-0.048	0.1146	No
91	CACNA1G	CACNA1G Entrez, Source	calcium channel, voltage-dependent, alpha 1G subunit	9066	-0.048	0.1171	No
92	PPARD	PPARD Entrez, Source	peroxisome proliferative activated receptor, delta	9075	-0.048	0.1210	No
93	SLC18A2	SLC18A2 Entrez, Source	solute carrier family 18 (vesicular monoamine), member 2	9148	-0.050	0.1202	No
94	VIP	VIP Entrez, Source	vasoactive intestinal peptide	9285	-0.052	0.1148	No
95	HOXC10	HOXC10 Entrez, Source	homeobox C10	9320	-0.053	0.1171	No
96	ISL1	ISL1 Entrez, Source	ISL1 transcription factor, LIM/homeodomain, (islet-1)	9336	-0.053	0.1210	No
97	TRIM39	TRIM39 Entrez, Source	tripartite motif-containing 39	9616	-0.058	0.1053	No
98	YWHAZ	YWHAZ Entrez, Source	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	9753	-0.061	0.1007	No
99	KCNA5	KCNA5 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 5	10246	-0.071	0.0702	No
100	RPL4	RPL4 Entrez, Source	ribosomal protein L4	10426	-0.075	0.0637	No
101	SMAD6	SMAD6 Entrez, Source	SMAD, mothers against DPP homolog 6 (Drosophila)	10518	-0.078	0.0641	No
102	HAND1	HAND1 Entrez, Source	heart and neural crest derivatives expressed 1	10537	-0.079	0.0701	No
103	PPM2C	PPM2C Entrez, Source	protein phosphatase 2C, magnesium-dependent, catalytic subunit	10699	-0.083	0.0656	No
104	CREB3L2	CREB3L2 Entrez, Source	cAMP responsive element binding protein 3-like 2	10782	-0.085	0.0673	No
105	HTR2C	HTR2C Entrez, Source	5-hydroxytryptamine (serotonin) receptor 2C	10920	-0.088	0.0652	No
106	PAFAH1B1	PAFAH1B1 Entrez, Source	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa	10930	-0.089	0.0728	No
107	RET	RET Entrez, Source	ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)	11258	-0.097	0.0572	No
108	NTRK2	NTRK2 Entrez, Source	neurotrophic tyrosine kinase, receptor, type 2	11369	-0.101	0.0583	No
109	BSND	BSND Entrez, Source	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	11402	-0.102	0.0654	No
110	SULT4A1	SULT4A1 Entrez, Source	sulfotransferase family 4A, member 1	11515	-0.106	0.0668	No
111	AREG	AREG Entrez, Source	amphiregulin (schwannoma-derived growth factor)	11612	-0.110	0.0698	No
112	CNN3	CNN3 Entrez, Source	calponin 3, acidic	11628	-0.110	0.0790	No
113	EIF4A1	EIF4A1 Entrez, Source	eukaryotic translation initiation factor 4A, isoform 1	11843	-0.119	0.0739	No
114	SCAMP5	SCAMP5 Entrez, Source	secretory carrier membrane protein 5	12110	-0.132	0.0661	No
115	DDIT3	DDIT3 Entrez, Source	DNA-damage-inducible transcript 3	13182	-0.289	0.0121	No