Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_8d
GeneSetV$HNF3B_01
Enrichment Score (ES)0.5548617
Normalized Enrichment Score (NES)1.9884156
Nominal p-value0.0
FDR q-value0.005114344
FWER p-Value0.238
Table: GSEA Results Summary



Fig 1: Enrichment plot: V$HNF3B_01   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ANXA1ANXA1
Entrez,  Source
annexin A1110.8840.0923Yes
2EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)870.5370.1433Yes
3GPM6AGPM6A
Entrez,  Source
glycoprotein M6A1300.4660.1893Yes
4PLA1APLA1A
Entrez,  Source
phospholipase A1 member A2360.3550.2188Yes
5CITED2CITED2
Entrez,  Source
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 22970.3110.2471Yes
6ENPEPENPEP
Entrez,  Source
glutamyl aminopeptidase (aminopeptidase A)2980.3100.2798Yes
7TYRO3TYRO3
Entrez,  Source
TYRO3 protein tyrosine kinase3210.2920.3089Yes
8NCDNNCDN
Entrez,  Source
neurochondrin3580.2770.3354Yes
9IER3IER3
Entrez,  Source
immediate early response 33920.2640.3607Yes
10RBP4RBP4
Entrez,  Source
retinol binding protein 4, plasma4580.2420.3813Yes
11BAIAP2BAIAP2
Entrez,  Source
BAI1-associated protein 24730.2360.4051Yes
12CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 616000.2060.4174Yes
13WNT4WNT4
Entrez,  Source
wingless-type MMTV integration site family, member 46720.1910.4321Yes
14SSH3SSH3
Entrez,  Source
slingshot homolog 3 (Drosophila)7920.1700.4411Yes
15FUT8FUT8
Entrez,  Source
fucosyltransferase 8 (alpha (1,6) fucosyltransferase)7930.1700.4591Yes
16LMO4LMO4
Entrez,  Source
LIM domain only 48080.1690.4758Yes
17SLC16A6SLC16A6
Entrez,  Source
solute carrier family 16, member 6 (monocarboxylic acid transporter 7)8550.1620.4894Yes
18SULF2SULF2
Entrez,  Source
sulfatase 211790.1300.4787Yes
19PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha11810.1300.4922Yes
20DUSP1DUSP1
Entrez,  Source
dual specificity phosphatase 112610.1230.4992Yes
21TTRTTR
Entrez,  Source
transthyretin (prealbumin, amyloidosis type I)13180.1190.5075Yes
22PHEXPHEX
Entrez,  Source
phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets)13510.1160.5173Yes
23ATP2A3ATP2A3
Entrez,  Source
ATPase, Ca++ transporting, ubiquitous13900.1140.5265Yes
24GFRA1GFRA1
Entrez,  Source
GDNF family receptor alpha 115470.1050.5258Yes
25NFIBNFIB
Entrez,  Source
nuclear factor I/B15820.1030.5341Yes
26ELMO3ELMO3
Entrez,  Source
engulfment and cell motility 315990.1030.5438Yes
27PLAG1PLAG1
Entrez,  Source
pleiomorphic adenoma gene 118160.0920.5372Yes
28TLE4TLE4
Entrez,  Source
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)18410.0910.5450Yes
29RUNX2RUNX2
Entrez,  Source
runt-related transcription factor 218740.0900.5520Yes
30LCP2LCP2
Entrez,  Source
lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)19580.0870.5549Yes
31OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)21730.0780.5470No
32CYLN2CYLN2
Entrez,  Source
cytoplasmic linker 222600.0750.5484No
33LTALTA
Entrez,  Source
lymphotoxin alpha (TNF superfamily, member 1)23600.0720.5485No
34TNMDTNMD
Entrez,  Source
tenomodulin24740.0690.5473No
35POU3F4POU3F4
Entrez,  Source
POU domain, class 3, transcription factor 429290.0570.5190No
36LMO3LMO3
Entrez,  Source
LIM domain only 3 (rhombotin-like 2)30280.0540.5172No
37ZFHX1BZFHX1B
Entrez,  Source
zinc finger homeobox 1b30810.0520.5188No
38IL5IL5
Entrez,  Source
interleukin 5 (colony-stimulating factor, eosinophil)31400.0510.5198No
39ATP1B4ATP1B4
Entrez,  Source
ATPase, (Na+)/K+ transporting, beta 4 polypeptide31440.0510.5250No
40CYP26B1CYP26B1
Entrez,  Source
cytochrome P450, family 26, subfamily B, polypeptide 132310.0490.5236No
41FOXA2FOXA2
Entrez,  Source
forkhead box A236590.0400.4956No
42SLC6A4SLC6A4
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, serotonin), member 437040.0390.4963No
43ISG20ISG20
Entrez,  Source
interferon stimulated exonuclease gene 20kDa37320.0380.4983No
44BAMBIBAMBI
Entrez,  Source
BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)39450.0340.4859No
45RAB3IPRAB3IP
Entrez,  Source
RAB3A interacting protein (rabin3)41230.0300.4757No
46PLCB1PLCB1
Entrez,  Source
phospholipase C, beta 1 (phosphoinositide-specific)47640.0190.4295No
47NFATC4NFATC4
Entrez,  Source
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 448380.0180.4258No
48OPRM1OPRM1
Entrez,  Source
opioid receptor, mu 148600.0170.4261No
49DNAJA4DNAJA4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 450300.0150.4149No
50INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)50810.0140.4126No
51ORC4LORC4L
Entrez,  Source
origin recognition complex, subunit 4-like (yeast)54700.0080.3841No
52HOXA4HOXA4
Entrez,  Source
homeobox A458060.0030.3591No
53CHN2CHN2
Entrez,  Source
chimerin (chimaerin) 258420.0020.3567No
54CACNA1HCACNA1H
Entrez,  Source
calcium channel, voltage-dependent, alpha 1H subunit58960.0020.3529No
55FLOT1FLOT1
Entrez,  Source
flotillin 158970.0020.3531No
56TNFTNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)59140.0010.3520No
57CALD1CALD1
Entrez,  Source
caldesmon 159700.0010.3479No
58SERPIND1SERPIND1
Entrez,  Source
serpin peptidase inhibitor, clade D (heparin cofactor), member 16527-0.0080.3068No
59PNMA1PNMA1
Entrez,  Source
paraneoplastic antigen MA16758-0.0120.2907No
60IBSPIBSP
Entrez,  Source
integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)7019-0.0150.2727No
61PPP1CBPPP1CB
Entrez,  Source
protein phosphatase 1, catalytic subunit, beta isoform7228-0.0190.2589No
62CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 67356-0.0200.2515No
63ID1ID1
Entrez,  Source
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein7557-0.0230.2389No
64ITPKBITPKB
Entrez,  Source
inositol 1,4,5-trisphosphate 3-kinase B7612-0.0240.2374No
65PDCD4PDCD4
Entrez,  Source
programmed cell death 4 (neoplastic transformation inhibitor)7707-0.0260.2330No
66EPHB1EPHB1
Entrez,  Source
EPH receptor B18320-0.0360.1907No
67ABT1ABT1
Entrez,  Source
activator of basal transcription 18653-0.0410.1700No
68MCART1MCART1
Entrez,  Source
mitochondrial carrier triple repeat 18684-0.0420.1721No
69NEUROD2NEUROD2
Entrez,  Source
neurogenic differentiation 28718-0.0430.1741No
70PVRL1PVRL1
Entrez,  Source
poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin)8795-0.0440.1730No
71TAC1TAC1
Entrez,  Source
tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma)9176-0.0500.1496No
72PPP1R10PPP1R10
Entrez,  Source
protein phosphatase 1, regulatory subunit 109241-0.0510.1502No
73VAX1VAX1
Entrez,  Source
ventral anterior homeobox 19319-0.0530.1499No
74TWIST2TWIST2
Entrez,  Source
twist homolog 2 (Drosophila)9406-0.0540.1492No
75LHX5LHX5
Entrez,  Source
LIM homeobox 59552-0.0570.1442No
76GABRA1GABRA1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, alpha 19644-0.0590.1435No
77TOB1TOB1
Entrez,  Source
transducer of ERBB2, 110294-0.0720.1022No
78ACCN5ACCN5
Entrez,  Source
amiloride-sensitive cation channel 5, intestinal10559-0.0790.0906No
79HAS2HAS2
Entrez,  Source
hyaluronan synthase 210766-0.0840.0840No
80MRPS18BMRPS18B
Entrez,  Source
mitochondrial ribosomal protein S18B11420-0.1030.0456No
81NFIXNFIX
Entrez,  Source
nuclear factor I/X (CCAAT-binding transcription factor)11585-0.1090.0447No
82FGF13FGF13
Entrez,  Source
fibroblast growth factor 1311831-0.1180.0386No
83DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)12470-0.1530.0066No
84DRD3DRD3
Entrez,  Source
dopamine receptor D312535-0.1570.0184No
85ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein12777-0.1810.0193No
86GTF2A1GTF2A1
Entrez,  Source
general transcription factor IIA, 1, 19/37kDa13010-0.2200.0250No
Table: GSEA details [plain text format]



Fig 2: V$HNF3B_01   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: V$HNF3B_01: Random ES distribution   
Gene set null distribution of ES for V$HNF3B_01