Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
Upregulated in class | double_gel_8d |
GeneSet | V$HNF3B_01 |
Enrichment Score (ES) | 0.5548617 |
Normalized Enrichment Score (NES) | 1.9884156 |
Nominal p-value | 0.0 |
FDR q-value | 0.005114344 |
FWER p-Value | 0.238 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | ANXA1 | ANXA1 Entrez,  Source | annexin A1 | 11 | 0.884 | 0.0923 | Yes |
2 | EGR2 | EGR2 Entrez,  Source | early growth response 2 (Krox-20 homolog, Drosophila) | 87 | 0.537 | 0.1433 | Yes |
3 | GPM6A | GPM6A Entrez,  Source | glycoprotein M6A | 130 | 0.466 | 0.1893 | Yes |
4 | PLA1A | PLA1A Entrez,  Source | phospholipase A1 member A | 236 | 0.355 | 0.2188 | Yes |
5 | CITED2 | CITED2 Entrez,  Source | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | 297 | 0.311 | 0.2471 | Yes |
6 | ENPEP | ENPEP Entrez,  Source | glutamyl aminopeptidase (aminopeptidase A) | 298 | 0.310 | 0.2798 | Yes |
7 | TYRO3 | TYRO3 Entrez,  Source | TYRO3 protein tyrosine kinase | 321 | 0.292 | 0.3089 | Yes |
8 | NCDN | NCDN Entrez,  Source | neurochondrin | 358 | 0.277 | 0.3354 | Yes |
9 | IER3 | IER3 Entrez,  Source | immediate early response 3 | 392 | 0.264 | 0.3607 | Yes |
10 | RBP4 | RBP4 Entrez,  Source | retinol binding protein 4, plasma | 458 | 0.242 | 0.3813 | Yes |
11 | BAIAP2 | BAIAP2 Entrez,  Source | BAI1-associated protein 2 | 473 | 0.236 | 0.4051 | Yes |
12 | CYR61 | CYR61 Entrez,  Source | cysteine-rich, angiogenic inducer, 61 | 600 | 0.206 | 0.4174 | Yes |
13 | WNT4 | WNT4 Entrez,  Source | wingless-type MMTV integration site family, member 4 | 672 | 0.191 | 0.4321 | Yes |
14 | SSH3 | SSH3 Entrez,  Source | slingshot homolog 3 (Drosophila) | 792 | 0.170 | 0.4411 | Yes |
15 | FUT8 | FUT8 Entrez,  Source | fucosyltransferase 8 (alpha (1,6) fucosyltransferase) | 793 | 0.170 | 0.4591 | Yes |
16 | LMO4 | LMO4 Entrez,  Source | LIM domain only 4 | 808 | 0.169 | 0.4758 | Yes |
17 | SLC16A6 | SLC16A6 Entrez,  Source | solute carrier family 16, member 6 (monocarboxylic acid transporter 7) | 855 | 0.162 | 0.4894 | Yes |
18 | SULF2 | SULF2 Entrez,  Source | sulfatase 2 | 1179 | 0.130 | 0.4787 | Yes |
19 | PPARGC1A | PPARGC1A Entrez,  Source | peroxisome proliferative activated receptor, gamma, coactivator 1, alpha | 1181 | 0.130 | 0.4922 | Yes |
20 | DUSP1 | DUSP1 Entrez,  Source | dual specificity phosphatase 1 | 1261 | 0.123 | 0.4992 | Yes |
21 | TTR | TTR Entrez,  Source | transthyretin (prealbumin, amyloidosis type I) | 1318 | 0.119 | 0.5075 | Yes |
22 | PHEX | PHEX Entrez,  Source | phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) | 1351 | 0.116 | 0.5173 | Yes |
23 | ATP2A3 | ATP2A3 Entrez,  Source | ATPase, Ca++ transporting, ubiquitous | 1390 | 0.114 | 0.5265 | Yes |
24 | GFRA1 | GFRA1 Entrez,  Source | GDNF family receptor alpha 1 | 1547 | 0.105 | 0.5258 | Yes |
25 | NFIB | NFIB Entrez,  Source | nuclear factor I/B | 1582 | 0.103 | 0.5341 | Yes |
26 | ELMO3 | ELMO3 Entrez,  Source | engulfment and cell motility 3 | 1599 | 0.103 | 0.5438 | Yes |
27 | PLAG1 | PLAG1 Entrez,  Source | pleiomorphic adenoma gene 1 | 1816 | 0.092 | 0.5372 | Yes |
28 | TLE4 | TLE4 Entrez,  Source | transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) | 1841 | 0.091 | 0.5450 | Yes |
29 | RUNX2 | RUNX2 Entrez,  Source | runt-related transcription factor 2 | 1874 | 0.090 | 0.5520 | Yes |
30 | LCP2 | LCP2 Entrez,  Source | lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) | 1958 | 0.087 | 0.5549 | Yes |
31 | OTX2 | OTX2 Entrez,  Source | orthodenticle homolog 2 (Drosophila) | 2173 | 0.078 | 0.5470 | No |
32 | CYLN2 | CYLN2 Entrez,  Source | cytoplasmic linker 2 | 2260 | 0.075 | 0.5484 | No |
33 | LTA | LTA Entrez,  Source | lymphotoxin alpha (TNF superfamily, member 1) | 2360 | 0.072 | 0.5485 | No |
34 | TNMD | TNMD Entrez,  Source | tenomodulin | 2474 | 0.069 | 0.5473 | No |
35 | POU3F4 | POU3F4 Entrez,  Source | POU domain, class 3, transcription factor 4 | 2929 | 0.057 | 0.5190 | No |
36 | LMO3 | LMO3 Entrez,  Source | LIM domain only 3 (rhombotin-like 2) | 3028 | 0.054 | 0.5172 | No |
37 | ZFHX1B | ZFHX1B Entrez,  Source | zinc finger homeobox 1b | 3081 | 0.052 | 0.5188 | No |
38 | IL5 | IL5 Entrez,  Source | interleukin 5 (colony-stimulating factor, eosinophil) | 3140 | 0.051 | 0.5198 | No |
39 | ATP1B4 | ATP1B4 Entrez,  Source | ATPase, (Na+)/K+ transporting, beta 4 polypeptide | 3144 | 0.051 | 0.5250 | No |
40 | CYP26B1 | CYP26B1 Entrez,  Source | cytochrome P450, family 26, subfamily B, polypeptide 1 | 3231 | 0.049 | 0.5236 | No |
41 | FOXA2 | FOXA2 Entrez,  Source | forkhead box A2 | 3659 | 0.040 | 0.4956 | No |
42 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 3704 | 0.039 | 0.4963 | No |
43 | ISG20 | ISG20 Entrez,  Source | interferon stimulated exonuclease gene 20kDa | 3732 | 0.038 | 0.4983 | No |
44 | BAMBI | BAMBI Entrez,  Source | BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) | 3945 | 0.034 | 0.4859 | No |
45 | RAB3IP | RAB3IP Entrez,  Source | RAB3A interacting protein (rabin3) | 4123 | 0.030 | 0.4757 | No |
46 | PLCB1 | PLCB1 Entrez,  Source | phospholipase C, beta 1 (phosphoinositide-specific) | 4764 | 0.019 | 0.4295 | No |
47 | NFATC4 | NFATC4 Entrez,  Source | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 | 4838 | 0.018 | 0.4258 | No |
48 | OPRM1 | OPRM1 Entrez,  Source | opioid receptor, mu 1 | 4860 | 0.017 | 0.4261 | No |
49 | DNAJA4 | DNAJA4 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 4 | 5030 | 0.015 | 0.4149 | No |
50 | INHBA | INHBA Entrez,  Source | inhibin, beta A (activin A, activin AB alpha polypeptide) | 5081 | 0.014 | 0.4126 | No |
51 | ORC4L | ORC4L Entrez,  Source | origin recognition complex, subunit 4-like (yeast) | 5470 | 0.008 | 0.3841 | No |
52 | HOXA4 | HOXA4 Entrez,  Source | homeobox A4 | 5806 | 0.003 | 0.3591 | No |
53 | CHN2 | CHN2 Entrez,  Source | chimerin (chimaerin) 2 | 5842 | 0.002 | 0.3567 | No |
54 | CACNA1H | CACNA1H Entrez,  Source | calcium channel, voltage-dependent, alpha 1H subunit | 5896 | 0.002 | 0.3529 | No |
55 | FLOT1 | FLOT1 Entrez,  Source | flotillin 1 | 5897 | 0.002 | 0.3531 | No |
56 | TNF | TNF Entrez,  Source | tumor necrosis factor (TNF superfamily, member 2) | 5914 | 0.001 | 0.3520 | No |
57 | CALD1 | CALD1 Entrez,  Source | caldesmon 1 | 5970 | 0.001 | 0.3479 | No |
58 | SERPIND1 | SERPIND1 Entrez,  Source | serpin peptidase inhibitor, clade D (heparin cofactor), member 1 | 6527 | -0.008 | 0.3068 | No |
59 | PNMA1 | PNMA1 Entrez,  Source | paraneoplastic antigen MA1 | 6758 | -0.012 | 0.2907 | No |
60 | IBSP | IBSP Entrez,  Source | integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) | 7019 | -0.015 | 0.2727 | No |
61 | PPP1CB | PPP1CB Entrez,  Source | protein phosphatase 1, catalytic subunit, beta isoform | 7228 | -0.019 | 0.2589 | No |
62 | CDK6 | CDK6 Entrez,  Source | cyclin-dependent kinase 6 | 7356 | -0.020 | 0.2515 | No |
63 | ID1 | ID1 Entrez,  Source | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 7557 | -0.023 | 0.2389 | No |
64 | ITPKB | ITPKB Entrez,  Source | inositol 1,4,5-trisphosphate 3-kinase B | 7612 | -0.024 | 0.2374 | No |
65 | PDCD4 | PDCD4 Entrez,  Source | programmed cell death 4 (neoplastic transformation inhibitor) | 7707 | -0.026 | 0.2330 | No |
66 | EPHB1 | EPHB1 Entrez,  Source | EPH receptor B1 | 8320 | -0.036 | 0.1907 | No |
67 | ABT1 | ABT1 Entrez,  Source | activator of basal transcription 1 | 8653 | -0.041 | 0.1700 | No |
68 | MCART1 | MCART1 Entrez,  Source | mitochondrial carrier triple repeat 1 | 8684 | -0.042 | 0.1721 | No |
69 | NEUROD2 | NEUROD2 Entrez,  Source | neurogenic differentiation 2 | 8718 | -0.043 | 0.1741 | No |
70 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 8795 | -0.044 | 0.1730 | No |
71 | TAC1 | TAC1 Entrez,  Source | tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma) | 9176 | -0.050 | 0.1496 | No |
72 | PPP1R10 | PPP1R10 Entrez,  Source | protein phosphatase 1, regulatory subunit 10 | 9241 | -0.051 | 0.1502 | No |
73 | VAX1 | VAX1 Entrez,  Source | ventral anterior homeobox 1 | 9319 | -0.053 | 0.1499 | No |
74 | TWIST2 | TWIST2 Entrez,  Source | twist homolog 2 (Drosophila) | 9406 | -0.054 | 0.1492 | No |
75 | LHX5 | LHX5 Entrez,  Source | LIM homeobox 5 | 9552 | -0.057 | 0.1442 | No |
76 | GABRA1 | GABRA1 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, alpha 1 | 9644 | -0.059 | 0.1435 | No |
77 | TOB1 | TOB1 Entrez,  Source | transducer of ERBB2, 1 | 10294 | -0.072 | 0.1022 | No |
78 | ACCN5 | ACCN5 Entrez,  Source | amiloride-sensitive cation channel 5, intestinal | 10559 | -0.079 | 0.0906 | No |
79 | HAS2 | HAS2 Entrez,  Source | hyaluronan synthase 2 | 10766 | -0.084 | 0.0840 | No |
80 | MRPS18B | MRPS18B Entrez,  Source | mitochondrial ribosomal protein S18B | 11420 | -0.103 | 0.0456 | No |
81 | NFIX | NFIX Entrez,  Source | nuclear factor I/X (CCAAT-binding transcription factor) | 11585 | -0.109 | 0.0447 | No |
82 | FGF13 | FGF13 Entrez,  Source | fibroblast growth factor 13 | 11831 | -0.118 | 0.0386 | No |
83 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12470 | -0.153 | 0.0066 | No |
84 | DRD3 | DRD3 Entrez,  Source | dopamine receptor D3 | 12535 | -0.157 | 0.0184 | No |
85 | ID2 | ID2 Entrez,  Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 12777 | -0.181 | 0.0193 | No |
86 | GTF2A1 | GTF2A1 Entrez,  Source | general transcription factor IIA, 1, 19/37kDa | 13010 | -0.220 | 0.0250 | No |