Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in class	double_gel_8d
GeneSet	V$SRF_Q4
Enrichment Score (ES)	0.54883665
Normalized Enrichment Score (NES)	2.0401306
Nominal p-value	0.0
FDR q-value	0.0027222661
FWER p-Value	0.104

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	9	0.936	0.0702	Yes
2	SLC25A4	SLC25A4 Entrez, Source	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	14	0.830	0.1328	Yes
3	CTGF	CTGF Entrez, Source	connective tissue growth factor	27	0.757	0.1892	Yes
4	EGR2	EGR2 Entrez, Source	early growth response 2 (Krox-20 homolog, Drosophila)	87	0.537	0.2254	Yes
5	RAB30	RAB30 Entrez, Source	RAB30, member RAS oncogene family	98	0.518	0.2639	Yes
6	FST	FST Entrez, Source	follistatin	169	0.423	0.2906	Yes
7	SERPINH1	SERPINH1 Entrez, Source	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	184	0.403	0.3200	Yes
8	SGK	SGK Entrez, Source	serum/glucocorticoid regulated kinase	200	0.388	0.3483	Yes
9	TAGLN	TAGLN Entrez, Source	transgelin	250	0.344	0.3706	Yes
10	CITED2	CITED2 Entrez, Source	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	297	0.311	0.3906	Yes
11	EDN1	EDN1 Entrez, Source	endothelin 1	326	0.291	0.4106	Yes
12	PPP2R3A	PPP2R3A Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha	331	0.289	0.4322	Yes
13	FOXP1	FOXP1 Entrez, Source	forkhead box P1	375	0.270	0.4494	Yes
14	TMOD1	TMOD1 Entrez, Source	tropomodulin 1	395	0.263	0.4678	Yes
15	DUSP5	DUSP5 Entrez, Source	dual specificity phosphatase 5	472	0.237	0.4800	Yes
16	ACTG2	ACTG2 Entrez, Source	actin, gamma 2, smooth muscle, enteric	711	0.183	0.4759	Yes
17	EGR1	EGR1 Entrez, Source	early growth response 1	756	0.176	0.4859	Yes
18	CX3CL1	CX3CL1 Entrez, Source	chemokine (C-X3-C motif) ligand 1	837	0.164	0.4923	Yes
19	JUNB	JUNB Entrez, Source	jun B proto-oncogene	861	0.161	0.5027	Yes
20	NR4A1	NR4A1 Entrez, Source	nuclear receptor subfamily 4, group A, member 1	1043	0.142	0.4998	Yes
21	TGIF	TGIF Entrez, Source	TGFB-induced factor (TALE family homeobox)	1094	0.137	0.5064	Yes
22	PPAP2B	PPAP2B Entrez, Source	phosphatidic acid phosphatase type 2B	1114	0.135	0.5152	Yes
23	ACTA1	ACTA1 Entrez, Source	actin, alpha 1, skeletal muscle	1218	0.126	0.5169	Yes
24	MYO1E	MYO1E Entrez, Source	myosin IE	1228	0.126	0.5258	Yes
25	MAPKAPK2	MAPKAPK2 Entrez, Source	mitogen-activated protein kinase-activated protein kinase 2	1230	0.125	0.5352	Yes
26	ANXA6	ANXA6 Entrez, Source	annexin A6	1439	0.111	0.5279	Yes
27	IER2	IER2 Entrez, Source	immediate early response 2	1461	0.110	0.5346	Yes
28	DUSP6	DUSP6 Entrez, Source	dual specificity phosphatase 6	1504	0.108	0.5396	Yes
29	TGFB1I1	TGFB1I1 Entrez, Source	transforming growth factor beta 1 induced transcript 1	1509	0.108	0.5475	Yes
30	MYO1B	MYO1B Entrez, Source	myosin IB	1595	0.103	0.5488	Yes
31	SDPR	SDPR Entrez, Source	serum deprivation response (phosphatidylserine binding protein)	2231	0.076	0.5066	No
32	SORT1	SORT1 Entrez, Source	sortilin 1	2329	0.073	0.5048	No
33	TNMD	TNMD Entrez, Source	tenomodulin	2474	0.069	0.4991	No
34	CDKN1B	CDKN1B Entrez, Source	cyclin-dependent kinase inhibitor 1B (p27, Kip1)	2499	0.068	0.5024	No
35	CRH	CRH Entrez, Source	corticotropin releasing hormone	2685	0.063	0.4932	No
36	RERE	RERE Entrez, Source	arginine-glutamic acid dipeptide (RE) repeats	2695	0.063	0.4973	No
37	DUSP2	DUSP2 Entrez, Source	dual specificity phosphatase 2	2724	0.062	0.4998	No
38	EGR3	EGR3 Entrez, Source	early growth response 3	2754	0.061	0.5023	No
39	NR2F1	NR2F1 Entrez, Source	nuclear receptor subfamily 2, group F, member 1	2825	0.059	0.5015	No
40	POU3F4	POU3F4 Entrez, Source	POU domain, class 3, transcription factor 4	2929	0.057	0.4980	No
41	PLCB3	PLCB3 Entrez, Source	phospholipase C, beta 3 (phosphatidylinositol-specific)	3154	0.051	0.4849	No
42	ACTN1	ACTN1 Entrez, Source	actinin, alpha 1	3213	0.049	0.4842	No
43	GAB2	GAB2 Entrez, Source	GRB2-associated binding protein 2	3334	0.046	0.4787	No
44	NCOA6	NCOA6 Entrez, Source	nuclear receptor coactivator 6	3527	0.042	0.4674	No
45	ASPA	ASPA Entrez, Source	aspartoacylase (Canavan disease)	3681	0.039	0.4588	No
46	GPR20	GPR20 Entrez, Source	G protein-coupled receptor 20	3709	0.039	0.4596	No
47	IHPK1	IHPK1 Entrez, Source	inositol hexaphosphate kinase 1	3735	0.038	0.4606	No
48	FGFRL1	FGFRL1 Entrez, Source	fibroblast growth factor receptor-like 1	3851	0.036	0.4546	No
49	KCNJ13	KCNJ13 Entrez, Source	potassium inwardly-rectifying channel, subfamily J, member 13	3972	0.033	0.4481	No
50	EGR4	EGR4 Entrez, Source	early growth response 4	4003	0.033	0.4483	No
51	AKAP12	AKAP12 Entrez, Source	A kinase (PRKA) anchor protein (gravin) 12	4283	0.028	0.4293	No
52	MCL1	MCL1 Entrez, Source	myeloid cell leukemia sequence 1 (BCL2-related)	4349	0.026	0.4264	No
53	SLC4A3	SLC4A3 Entrez, Source	solute carrier family 4, anion exchanger, member 3	4573	0.022	0.4112	No
54	KCNK3	KCNK3 Entrez, Source	potassium channel, subfamily K, member 3	4699	0.020	0.4032	No
55	MMP14	MMP14 Entrez, Source	matrix metallopeptidase 14 (membrane-inserted)	4808	0.018	0.3965	No
56	RARB	RARB Entrez, Source	retinoic acid receptor, beta	4926	0.016	0.3889	No
57	DGKG	DGKG Entrez, Source	diacylglycerol kinase, gamma 90kDa	5006	0.015	0.3840	No
58	ACTB	ACTB Entrez, Source	actin, beta	5041	0.014	0.3825	No
59	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	5051	0.014	0.3829	No
60	COL23A1	COL23A1 Entrez, Source	collagen, type XXIII, alpha 1	5372	0.009	0.3594	No
61	RIMS1	RIMS1 Entrez, Source	regulating synaptic membrane exocytosis 1	5444	0.008	0.3547	No
62	MAPK14	MAPK14 Entrez, Source	mitogen-activated protein kinase 14	5554	0.007	0.3469	No
63	NR2F2	NR2F2 Entrez, Source	nuclear receptor subfamily 2, group F, member 2	5565	0.006	0.3467	No
64	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	5602	0.006	0.3444	No
65	NPPA	NPPA Entrez, Source	natriuretic peptide precursor A	5715	0.004	0.3362	No
66	NLGN3	NLGN3 Entrez, Source	neuroligin 3	5755	0.003	0.3335	No
67	TNNC1	TNNC1 Entrez, Source	troponin C type 1 (slow)	5793	0.003	0.3309	No
68	DSTN	DSTN Entrez, Source	destrin (actin depolymerizing factor)	5815	0.003	0.3295	No
69	KCNA1	KCNA1 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	5912	0.001	0.3224	No
70	CALD1	CALD1 Entrez, Source	caldesmon 1	5970	0.001	0.3181	No
71	ROCK2	ROCK2 Entrez, Source	Rho-associated, coiled-coil containing protein kinase 2	6100	-0.002	0.3085	No
72	IL17B	IL17B Entrez, Source	interleukin 17B	6244	-0.004	0.2979	No
73	PADI2	PADI2 Entrez, Source	peptidyl arginine deiminase, type II	6353	-0.006	0.2902	No
74	MBNL1	MBNL1 Entrez, Source	muscleblind-like (Drosophila)	6403	-0.006	0.2870	No
75	MAP2K6	MAP2K6 Entrez, Source	mitogen-activated protein kinase kinase 6	6447	-0.007	0.2842	No
76	ESRRA	ESRRA Entrez, Source	estrogen-related receptor alpha	7036	-0.016	0.2410	No
77	TPM1	TPM1 Entrez, Source	tropomyosin 1 (alpha)	7114	-0.017	0.2364	No
78	CACNA1B	CACNA1B Entrez, Source	calcium channel, voltage-dependent, L type, alpha 1B subunit	7282	-0.019	0.2253	No
79	ATRX	ATRX Entrez, Source	alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)	7295	-0.019	0.2258	No
80	PPARG	PPARG Entrez, Source	peroxisome proliferative activated receptor, gamma	7396	-0.021	0.2199	No
81	JPH2	JPH2 Entrez, Source	junctophilin 2	7506	-0.023	0.2133	No
82	TAF5L	TAF5L Entrez, Source	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	7536	-0.023	0.2129	No
83	H2AFX	H2AFX Entrez, Source	H2A histone family, member X	7594	-0.024	0.2104	No
84	RBBP7	RBBP7 Entrez, Source	retinoblastoma binding protein 7	7634	-0.025	0.2093	No
85	MID1	MID1 Entrez, Source	midline 1 (Opitz/BBB syndrome)	7656	-0.025	0.2096	No
86	PPP1R12A	PPP1R12A Entrez, Source	protein phosphatase 1, regulatory (inhibitor) subunit 12A	7696	-0.026	0.2086	No
87	GRK6	GRK6 Entrez, Source	G protein-coupled receptor kinase 6	8007	-0.031	0.1875	No
88	MSX1	MSX1 Entrez, Source	msh homeobox homolog 1 (Drosophila)	8144	-0.033	0.1798	No
89	CSRP1	CSRP1 Entrez, Source	cysteine and glycine-rich protein 1	8162	-0.033	0.1810	No
90	PHF12	PHF12 Entrez, Source	PHD finger protein 12	8193	-0.034	0.1813	No
91	DDX17	DDX17 Entrez, Source	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	8274	-0.035	0.1779	No
92	VGF	VGF Entrez, Source	VGF nerve growth factor inducible	8355	-0.037	0.1746	No
93	SRD5A2	SRD5A2 Entrez, Source	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	8528	-0.039	0.1646	No
94	FOXE3	FOXE3 Entrez, Source	forkhead box E3	8571	-0.040	0.1644	No
95	KCNMB1	KCNMB1 Entrez, Source	potassium large conductance calcium-activated channel, subfamily M, beta member 1	8825	-0.044	0.1487	No
96	DLL1	DLL1 Entrez, Source	delta-like 1 (Drosophila)	9257	-0.052	0.1200	No
97	DIXDC1	DIXDC1 Entrez, Source	DIX domain containing 1	9318	-0.053	0.1195	No
98	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	9403	-0.054	0.1172	No
99	MAP1A	MAP1A Entrez, Source	microtubule-associated protein 1A	9542	-0.057	0.1111	No
100	RASD2	RASD2 Entrez, Source	RASD family, member 2	9709	-0.060	0.1031	No
101	SRP54	SRP54 Entrez, Source	signal recognition particle 54kDa	9782	-0.062	0.1023	No
102	CNN1	CNN1 Entrez, Source	calponin 1, basic, smooth muscle	10018	-0.067	0.0896	No
103	MYH11	MYH11 Entrez, Source	myosin, heavy chain 11, smooth muscle	10036	-0.067	0.0934	No
104	SND1	SND1 Entrez, Source	-	10707	-0.083	0.0490	No
105	PFN1	PFN1 Entrez, Source	profilin 1	10821	-0.086	0.0469	No
106	CFL1	CFL1 Entrez, Source	cofilin 1 (non-muscle)	10892	-0.088	0.0483	No
107	FGF17	FGF17 Entrez, Source	fibroblast growth factor 17	11001	-0.090	0.0470	No
108	FGF8	FGF8 Entrez, Source	fibroblast growth factor 8 (androgen-induced)	11017	-0.091	0.0527	No
109	CKM	CKM Entrez, Source	creatine kinase, muscle	11187	-0.095	0.0472	No
110	TPM3	TPM3 Entrez, Source	tropomyosin 3	11208	-0.096	0.0529	No
111	MUS81	MUS81 Entrez, Source	MUS81 endonuclease homolog (S. cerevisiae)	11503	-0.106	0.0387	No
112	NPR3	NPR3 Entrez, Source	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	12092	-0.131	0.0042	No
113	HOXA5	HOXA5 Entrez, Source	homeobox A5	12360	-0.146	-0.0049	No
114	CSDA	CSDA Entrez, Source	cold shock domain protein A	12392	-0.148	0.0040	No
115	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	12470	-0.153	0.0097	No
116	STAT5B	STAT5B Entrez, Source	signal transducer and activator of transcription 5B	13179	-0.287	-0.0221	No
117	GADD45G	GADD45G Entrez, Source	growth arrest and DNA-damage-inducible, gamma	13302	-0.454	0.0030	No