Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_8d
GeneSetV$TBP_01
Enrichment Score (ES)0.503625
Normalized Enrichment Score (NES)1.8518142
Nominal p-value0.0
FDR q-value0.01814381
FWER p-Value0.839
Table: GSEA Results Summary



Fig 1: Enrichment plot: V$TBP_01   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1COL1A2COL1A2
Entrez,  Source
collagen, type I, alpha 261.1540.0944Yes
2FOSFOS
Entrez,  Source
v-fos FBJ murine osteosarcoma viral oncogene homolog90.9360.1712Yes
3SLC25A4SLC25A4
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4140.8300.2391Yes
4EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)870.5370.2779Yes
5TRPM4TRPM4
Entrez,  Source
transient receptor potential cation channel, subfamily M, member 41370.4610.3120Yes
6P2RX5P2RX5
Entrez,  Source
purinergic receptor P2X, ligand-gated ion channel, 52050.3830.3384Yes
7SCHIP1SCHIP1
Entrez,  Source
schwannomin interacting protein 12310.3640.3665Yes
8SLC3A1SLC3A1
Entrez,  Source
13740.2710.3780Yes
9NR0B2NR0B2
Entrez,  Source
nuclear receptor subfamily 0, group B, member 24850.2320.3887Yes
10FLI1FLI1
Entrez,  Source
Friend leukemia virus integration 16270.2020.3946Yes
11TEFTEF
Entrez,  Source
thyrotrophic embryonic factor7010.1860.4044Yes
12SSH3SSH3
Entrez,  Source
slingshot homolog 3 (Drosophila)7920.1700.4116Yes
13CKBCKB
Entrez,  Source
creatine kinase, brain8200.1660.4232Yes
14PRKAG1PRKAG1
Entrez,  Source
protein kinase, AMP-activated, gamma 1 non-catalytic subunit9420.1520.4266Yes
15S100A4S100A4
Entrez,  Source
S100 calcium binding protein A49620.1510.4375Yes
16NR4A1NR4A1
Entrez,  Source
nuclear receptor subfamily 4, group A, member 110430.1420.4432Yes
17TAX1BP3TAX1BP3
Entrez,  Source
Tax1 (human T-cell leukemia virus type I) binding protein 311660.1310.4447Yes
18PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha11810.1300.4543Yes
19AMPD1AMPD1
Entrez,  Source
adenosine monophosphate deaminase 1 (isoform M)11990.1280.4635Yes
20ACTA1ACTA1
Entrez,  Source
actin, alpha 1, skeletal muscle12180.1260.4725Yes
21SH3GLB2SH3GLB2
Entrez,  Source
SH3-domain GRB2-like endophilin B213760.1150.4701Yes
22GPSN2GPSN2
Entrez,  Source
glycoprotein, synaptic 214340.1120.4750Yes
23HRCHRC
Entrez,  Source
histidine rich calcium binding protein14860.1090.4801Yes
24PRKAA2PRKAA2
Entrez,  Source
protein kinase, AMP-activated, alpha 2 catalytic subunit15750.1040.4820Yes
25HSPB3HSPB3
Entrez,  Source
heat shock 27kDa protein 317390.0960.4775Yes
26FXYD1FXYD1
Entrez,  Source
FXYD domain containing ion transport regulator 1 (phospholemman)17810.0940.4821Yes
27CDH20CDH20
Entrez,  Source
cadherin 20, type 217820.0940.4898Yes
28SEMA4BSEMA4B
Entrez,  Source
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B17860.0930.4973Yes
29BRAFBRAF
Entrez,  Source
v-raf murine sarcoma viral oncogene homolog B118040.0930.5036Yes
30HDAC7AHDAC7A
Entrez,  Source
histone deacetylase 7A19590.0870.4991No
31ABCC6ABCC6
Entrez,  Source
ATP-binding cassette, sub-family C (CFTR/MRP), member 620730.0820.4973No
32CHRDL1CHRDL1
Entrez,  Source
chordin-like 121700.0780.4965No
33ZFP36L1ZFP36L1
Entrez,  Source
zinc finger protein 36, C3H type-like 124450.0700.4815No
34GIT1GIT1
Entrez,  Source
G protein-coupled receptor kinase interactor 126230.0640.4734No
35TRDNTRDN
Entrez,  Source
triadin28510.0590.4611No
36DESDES
Entrez,  Source
desmin28790.0580.4639No
37HIST1H2BAHIST1H2BA
Entrez,  Source
histone cluster 1, H2ba32300.0490.4414No
38CYP26B1CYP26B1
Entrez,  Source
cytochrome P450, family 26, subfamily B, polypeptide 132310.0490.4454No
39ASB16ASB16
Entrez,  Source
ankyrin repeat and SOCS box-containing 1632500.0480.4480No
40DNM2DNM2
Entrez,  Source
dynamin 233020.0470.4481No
41GRIK4GRIK4
Entrez,  Source
glutamate receptor, ionotropic, kainate 433560.0460.4479No
42GPR153GPR153
Entrez,  Source
G protein-coupled receptor 15335350.0420.4379No
43SLC2A4SLC2A4
Entrez,  Source
solute carrier family 2 (facilitated glucose transporter), member 436770.0390.4304No
44GABRB2GABRB2
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, beta 237790.0370.4258No
45MYH8MYH8
Entrez,  Source
myosin, heavy chain 8, skeletal muscle, perinatal37860.0370.4284No
46CSNK1ECSNK1E
Entrez,  Source
casein kinase 1, epsilon43460.0260.3883No
47SULT2A1SULT2A1
Entrez,  Source
sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 143520.0260.3901No
48FGF21FGF21
Entrez,  Source
fibroblast growth factor 2144520.0240.3847No
49TSC1TSC1
Entrez,  Source
tuberous sclerosis 144770.0240.3848No
50TCF1TCF1
Entrez,  Source
transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor45170.0230.3837No
51GALNT1GALNT1
Entrez,  Source
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)48130.0180.3630No
52PTF1APTF1A
Entrez,  Source
pancreas specific transcription factor, 1a48860.0170.3589No
53DNAJA4DNAJA4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 450300.0150.3493No
54HAND2HAND2
Entrez,  Source
heart and neural crest derivatives expressed 253130.0100.3288No
55AQP1AQP1
Entrez,  Source
aquaporin 1 (Colton blood group)54000.0090.3231No
56EHD1EHD1
Entrez,  Source
EH-domain containing 157010.0040.3008No
57SLC35C2SLC35C2
Entrez,  Source
solute carrier family 35, member C257470.0040.2976No
58MAP2K5MAP2K5
Entrez,  Source
mitogen-activated protein kinase kinase 558870.0020.2873No
59GRIN2BGRIN2B
Entrez,  Source
glutamate receptor, ionotropic, N-methyl D-aspartate 2B6060-0.0010.2744No
60LUC7LLUC7L
Entrez,  Source
LUC7-like (S. cerevisiae)6242-0.0040.2610No
61GCGGCG
Entrez,  Source
glucagon6455-0.0070.2456No
62PAX3PAX3
Entrez,  Source
paired box gene 3 (Waardenburg syndrome 1)6540-0.0080.2399No
63POFUT1POFUT1
Entrez,  Source
protein O-fucosyltransferase 16632-0.0100.2338No
64PPP2R2APPP2R2A
Entrez,  Source
protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform6690-0.0110.2304No
65THBS2THBS2
Entrez,  Source
thrombospondin 26731-0.0110.2283No
66PNMA1PNMA1
Entrez,  Source
paraneoplastic antigen MA16758-0.0120.2273No
67CTCFCTCF
Entrez,  Source
CCCTC-binding factor (zinc finger protein)6862-0.0130.2205No
68ART5ART5
Entrez,  Source
ADP-ribosyltransferase 56905-0.0140.2185No
69FGF5FGF5
Entrez,  Source
fibroblast growth factor 56936-0.0140.2174No
70TTC17TTC17
Entrez,  Source
tetratricopeptide repeat domain 177081-0.0160.2078No
71HAPLN1HAPLN1
Entrez,  Source
hyaluronan and proteoglycan link protein 17300-0.0200.1930No
72MGAT3MGAT3
Entrez,  Source
mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase7454-0.0220.1832No
73HIST1H2AAHIST1H2AA
Entrez,  Source
histone cluster 1, H2aa7576-0.0240.1760No
74IGF1IGF1
Entrez,  Source
insulin-like growth factor 1 (somatomedin C)7950-0.0300.1503No
75NCOR1NCOR1
Entrez,  Source
nuclear receptor co-repressor 17954-0.0300.1526No
76ESRRGESRRG
Entrez,  Source
estrogen-related receptor gamma8140-0.0330.1413No
77NOGNOG
Entrez,  Source
noggin8217-0.0340.1384No
78CRISP1CRISP1
Entrez,  Source
cysteine-rich secretory protein 18354-0.0370.1311No
79AGTAGT
Entrez,  Source
angiotensinogen (serpin peptidase inhibitor, clade A, member 8)8544-0.0390.1201No
80CLCN1CLCN1
Entrez,  Source
chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant)8606-0.0410.1188No
81PACSIN3PACSIN3
Entrez,  Source
protein kinase C and casein kinase substrate in neurons 38824-0.0440.1060No
82MYOCDMYOCD
Entrez,  Source
myocardin9057-0.0480.0925No
83FHL2FHL2
Entrez,  Source
four and a half LIM domains 29173-0.0500.0879No
84EPHA7EPHA7
Entrez,  Source
EPH receptor A79340-0.0530.0797No
85LGI1LGI1
Entrez,  Source
leucine-rich, glioma inactivated 19443-0.0550.0766No
86LHX5LHX5
Entrez,  Source
LIM homeobox 59552-0.0570.0731No
87MYST2MYST2
Entrez,  Source
MYST histone acetyltransferase 29642-0.0590.0712No
88RARARARA
Entrez,  Source
retinoic acid receptor, alpha9679-0.0590.0733No
89COL10A1COL10A1
Entrez,  Source
collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)9784-0.0620.0705No
90ITGA7ITGA7
Entrez,  Source
integrin, alpha 79876-0.0640.0689No
91POU4F1POU4F1
Entrez,  Source
POU domain, class 4, transcription factor 110099-0.0680.0577No
92TUBA4TUBA4
Entrez,  Source
tubulin, alpha 410207-0.0710.0555No
93MEOX2MEOX2
Entrez,  Source
mesenchyme homeobox 210416-0.0750.0459No
94NR0B1NR0B1
Entrez,  Source
nuclear receptor subfamily 0, group B, member 110457-0.0770.0492No
95PLEC1PLEC1
Entrez,  Source
plectin 1, intermediate filament binding protein 500kDa10661-0.0810.0405No
96KPNA3KPNA3
Entrez,  Source
karyopherin alpha 3 (importin alpha 4)10744-0.0840.0413No
97ART3ART3
Entrez,  Source
ADP-ribosyltransferase 310863-0.0870.0395No
98IFNB1IFNB1
Entrez,  Source
interferon, beta 1, fibroblast10923-0.0890.0423No
99ITGB3BPITGB3BP
Entrez,  Source
integrin beta 3 binding protein (beta3-endonexin)10965-0.0890.0466No
100RPS19RPS19
Entrez,  Source
ribosomal protein S1912113-0.132-0.0292No
101NDRG2NDRG2
Entrez,  Source
NDRG family member 212174-0.135-0.0226No
102SOX9SOX9
Entrez,  Source
SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal)12407-0.149-0.0279No
103NTF3NTF3
Entrez,  Source
neurotrophin 312465-0.152-0.0197No
104DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)12470-0.153-0.0074No
105SLC30A1SLC30A1
Entrez,  Source
solute carrier family 30 (zinc transporter), member 113129-0.260-0.0357No
106MAT2AMAT2A
Entrez,  Source
methionine adenosyltransferase II, alpha13326-0.6300.0012No
Table: GSEA details [plain text format]



Fig 2: V$TBP_01   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: V$TBP_01: Random ES distribution   
Gene set null distribution of ES for V$TBP_01