Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_48h.class.cls #double_gel_8d_versus_double_gel_48h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_48h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | VEGF_MMMEC_12HRS_UP |
| Enrichment Score (ES) | 0.82444036 |
| Normalized Enrichment Score (NES) | 2.2329803 |
| Nominal p-value | 0.0 |
| FDR q-value | 2.651424E-4 |
| FWER p-Value | 0.0020 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 6 | 1.154 | 0.2257 | Yes |
| 2 | MGP | MGP Entrez, Source | matrix Gla protein | 52 | 0.634 | 0.3465 | Yes |
| 3 | ANKRD1 | ANKRD1 Entrez, Source | ankyrin repeat domain 1 (cardiac muscle) | 93 | 0.529 | 0.4472 | Yes |
| 4 | CCL2 | CCL2 Entrez, Source | chemokine (C-C motif) ligand 2 | 145 | 0.452 | 0.5320 | Yes |
| 5 | BGN | BGN Entrez, Source | biglycan | 175 | 0.408 | 0.6099 | Yes |
| 6 | VCAM1 | VCAM1 Entrez, Source | vascular cell adhesion molecule 1 | 516 | 0.223 | 0.6281 | Yes |
| 7 | AQP7 | AQP7 Entrez, Source | aquaporin 7 | 548 | 0.217 | 0.6683 | Yes |
| 8 | IGFBP3 | IGFBP3 Entrez, Source | insulin-like growth factor binding protein 3 | 571 | 0.212 | 0.7082 | Yes |
| 9 | SGCE | SGCE Entrez, Source | sarcoglycan, epsilon | 650 | 0.197 | 0.7410 | Yes |
| 10 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 709 | 0.184 | 0.7727 | Yes |
| 11 | DIRC2 | DIRC2 Entrez, Source | disrupted in renal carcinoma 2 | 710 | 0.184 | 0.8087 | Yes |
| 12 | SULT1E1 | SULT1E1 Entrez, Source | sulfotransferase family 1E, estrogen-preferring, member 1 | 908 | 0.156 | 0.8244 | Yes |
| 13 | TFPI2 | TFPI2 Entrez, Source | tissue factor pathway inhibitor 2 | 1241 | 0.124 | 0.8239 | No |
| 14 | FGFBP1 | FGFBP1 Entrez, Source | fibroblast growth factor binding protein 1 | 1532 | 0.106 | 0.8229 | No |
| 15 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 3385 | 0.045 | 0.6928 | No |
| 16 | ELN | ELN Entrez, Source | elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) | 4386 | 0.026 | 0.6227 | No |
| 17 | SP3 | SP3 Entrez, Source | Sp3 transcription factor | 4938 | 0.016 | 0.5845 | No |
| 18 | MMP2 | MMP2 Entrez, Source | matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) | 5780 | 0.003 | 0.5220 | No |
| 19 | OXTR | OXTR Entrez, Source | oxytocin receptor | 6165 | -0.002 | 0.4936 | No |
| 20 | UBD | UBD Entrez, Source | ubiquitin D | 8096 | -0.032 | 0.3551 | No |
| 21 | SLC6A8 | SLC6A8 Entrez, Source | solute carrier family 6 (neurotransmitter transporter, creatine), member 8 | 11161 | -0.095 | 0.1436 | No |
| 22 | THY1 | THY1 Entrez, Source | Thy-1 cell surface antigen | 11400 | -0.102 | 0.1458 | No |
