Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_48h.class.cls
#double_gel_8d_versus_double_gel_48h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_48h_repos
Upregulated in classdouble_gel_8d
GeneSetWGGAATGY_V$TEF1_Q6
Enrichment Score (ES)0.4574018
Normalized Enrichment Score (NES)1.7749071
Nominal p-value0.0
FDR q-value0.030130217
FWER p-Value0.984
Table: GSEA Results Summary



Fig 1: Enrichment plot: WGGAATGY_V$TEF1_Q6   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LAMC2LAMC2
Entrez,  Source
laminin, gamma 2190.7910.0459Yes
2CTGFCTGF
Entrez,  Source
connective tissue growth factor270.7570.0906Yes
3ARHGAP24ARHGAP24
Entrez,  Source
Rho GTPase activating protein 24380.6900.1311Yes
4FSTL1FSTL1
Entrez,  Source
follistatin-like 1910.5310.1589Yes
5RAB30RAB30
Entrez,  Source
RAB30, member RAS oncogene family980.5180.1895Yes
6CRYABCRYAB
Entrez,  Source
crystallin, alpha B1060.4940.2184Yes
7GPM6AGPM6A
Entrez,  Source
glycoprotein M6A1300.4660.2446Yes
8ITGB4ITGB4
Entrez,  Source
integrin, beta 41650.4290.2677Yes
9DDR1DDR1
Entrez,  Source
discoidin domain receptor family, member 11900.3990.2897Yes
10SLC31A2SLC31A2
Entrez,  Source
solute carrier family 31 (copper transporters), member 22650.3320.3039Yes
11SPARCSPARC
Entrez,  Source
secreted protein, acidic, cysteine-rich (osteonectin)3170.2930.3176Yes
12EDN1EDN1
Entrez,  Source
endothelin 13260.2910.3344Yes
13RGS3RGS3
Entrez,  Source
regulator of G-protein signalling 33380.2870.3507Yes
14POPDC2POPDC2
Entrez,  Source
popeye domain containing 23680.2730.3649Yes
15RHBDF1RHBDF1
Entrez,  Source
rhomboid 5 homolog 1 (Drosophila)4310.2500.3751Yes
16LAMB2LAMB2
Entrez,  Source
laminin, beta 2 (laminin S)4330.2490.3899Yes
17MGLLMGLL
Entrez,  Source
monoglyceride lipase5100.2240.3976Yes
18PDGFAPDGFA
Entrez,  Source
platelet-derived growth factor alpha polypeptide5440.2180.4081Yes
19MYADMMYADM
Entrez,  Source
myeloid-associated differentiation marker5910.2080.4170Yes
20CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 616000.2060.4288Yes
21TMSB10TMSB10
Entrez,  Source
thymosin, beta 106700.1920.4350Yes
22ERBB2ERBB2
Entrez,  Source
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)9160.1540.4256Yes
23NR4A1NR4A1
Entrez,  Source
nuclear receptor subfamily 4, group A, member 110430.1420.4246Yes
24ACSL3ACSL3
Entrez,  Source
acyl-CoA synthetase long-chain family member 310860.1370.4296Yes
25KIFC3KIFC3
Entrez,  Source
kinesin family member C310870.1370.4378Yes
26TGIFTGIF
Entrez,  Source
TGFB-induced factor (TALE family homeobox)10940.1370.4455Yes
27NESNES
Entrez,  Source
nestin11470.1320.4495Yes
28ACTA1ACTA1
Entrez,  Source
actin, alpha 1, skeletal muscle12180.1260.4518Yes
29MLLT3MLLT3
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 314430.1110.4414Yes
30IL17REIL17RE
Entrez,  Source
interleukin 17 receptor E14570.1100.4470Yes
31JUBJUB
Entrez,  Source
jub, ajuba homolog (Xenopus laevis)14870.1090.4513Yes
32BMP4BMP4
Entrez,  Source
bone morphogenetic protein 415060.1080.4564Yes
33AVPI1AVPI1
Entrez,  Source
arginine vasopressin-induced 115760.1040.4574Yes
34DUSP7DUSP7
Entrez,  Source
dual specificity phosphatase 717680.0940.4486No
35APOEAPOE
Entrez,  Source
apolipoprotein E21230.0800.4265No
36ADPRHL1ADPRHL1
Entrez,  Source
ADP-ribosylhydrolase like 121680.0780.4278No
37OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)21730.0780.4322No
38MAPK10MAPK10
Entrez,  Source
mitogen-activated protein kinase 1021760.0780.4367No
39SMARCA2SMARCA2
Entrez,  Source
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 223000.0740.4318No
40IGFBP6IGFBP6
Entrez,  Source
insulin-like growth factor binding protein 623560.0720.4320No
41GDI1GDI1
Entrez,  Source
GDP dissociation inhibitor 126310.0640.4150No
42RPH3ALRPH3AL
Entrez,  Source
rabphilin 3A-like (without C2 domains)26460.0640.4178No
43RAB11BRAB11B
Entrez,  Source
RAB11B, member RAS oncogene family27730.0610.4118No
44ANGPT1ANGPT1
Entrez,  Source
angiopoietin 127820.0610.4149No
45ITPR3ITPR3
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 329230.0570.4076No
46ERGERG
Entrez,  Source
v-ets erythroblastosis virus E26 oncogene homolog (avian)29350.0570.4102No
47PGAM2PGAM2
Entrez,  Source
phosphoglycerate mutase 2 (muscle)31690.0500.3955No
48MLL5MLL5
Entrez,  Source
myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)33530.0460.3844No
49NR4A3NR4A3
Entrez,  Source
nuclear receptor subfamily 4, group A, member 334170.0450.3823No
50NRG2NRG2
Entrez,  Source
neuregulin 234180.0450.3850No
51GREM1GREM1
Entrez,  Source
gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)34290.0440.3868No
52SLC12A4SLC12A4
Entrez,  Source
solute carrier family 12 (potassium/chloride transporters), member 434370.0440.3890No
53SCN8ASCN8A
Entrez,  Source
sodium channel, voltage gated, type VIII, alpha35140.0430.3857No
54SLC16A8SLC16A8
Entrez,  Source
solute carrier family 16, member 8 (monocarboxylic acid transporter 3)37280.0380.3719No
55JUNDJUND
Entrez,  Source
jun D proto-oncogene38460.0360.3651No
56ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)38610.0350.3662No
57SLC5A2SLC5A2
Entrez,  Source
solute carrier family 5 (sodium/glucose cotransporter), member 238730.0350.3675No
58KCNJ13KCNJ13
Entrez,  Source
potassium inwardly-rectifying channel, subfamily J, member 1339720.0330.3620No
59DSPDSP
Entrez,  Source
desmoplakin40790.0310.3558No
60BCL11ABCL11A
Entrez,  Source
B-cell CLL/lymphoma 11A (zinc finger protein)41470.0300.3526No
61KATNB1KATNB1
Entrez,  Source
katanin p80 (WD repeat containing) subunit B 142700.0280.3450No
62KCNE2KCNE2
Entrez,  Source
potassium voltage-gated channel, Isk-related family, member 244030.0250.3365No
63MAPRE3MAPRE3
Entrez,  Source
microtubule-associated protein, RP/EB family, member 345090.0230.3299No
64MPZMPZ
Entrez,  Source
myelin protein zero (Charcot-Marie-Tooth neuropathy 1B)45160.0230.3308No
65NRG1NRG1
Entrez,  Source
neuregulin 145360.0230.3307No
66ZIC1ZIC1
Entrez,  Source
Zic family member 1 (odd-paired homolog, Drosophila)46190.0210.3258No
67SLC9A3R1SLC9A3R1
Entrez,  Source
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 146360.0210.3258No
68SMAD3SMAD3
Entrez,  Source
SMAD, mothers against DPP homolog 3 (Drosophila)47200.0200.3207No
69PLS3PLS3
Entrez,  Source
plastin 3 (T isoform)47950.0190.3162No
70PROK2PROK2
Entrez,  Source
prokineticin 248420.0180.3138No
71PIAS3PIAS3
Entrez,  Source
protein inhibitor of activated STAT, 349430.0160.3072No
72INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)50810.0140.2976No
73PGFPGF
Entrez,  Source
placental growth factor, vascular endothelial growth factor-related protein51430.0120.2937No
74SHC1SHC1
Entrez,  Source
SHC (Src homology 2 domain containing) transforming protein 151560.0120.2935No
75HAND2HAND2
Entrez,  Source
heart and neural crest derivatives expressed 253130.0100.2823No
76KLK6KLK6
Entrez,  Source
kallikrein 6 (neurosin, zyme)53170.0100.2827No
77EHD1EHD1
Entrez,  Source
EH-domain containing 157010.0040.2539No
78UNC13DUNC13D
Entrez,  Source
unc-13 homolog D (C. elegans)58460.0020.2431No
79GABRB1GABRB1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, beta 158630.0020.2420No
80GLP2RGLP2R
Entrez,  Source
glucagon-like peptide 2 receptor59020.0020.2392No
81RNF2RNF2
Entrez,  Source
ring finger protein 259360.0010.2367No
82GPRC5CGPRC5C
Entrez,  Source
G protein-coupled receptor, family C, group 5, member C6046-0.0010.2285No
83ROCK2ROCK2
Entrez,  Source
Rho-associated, coiled-coil containing protein kinase 26100-0.0020.2246No
84PDGFRAPDGFRA
Entrez,  Source
platelet-derived growth factor receptor, alpha polypeptide6101-0.0020.2247No
85ESR1ESR1
Entrez,  Source
estrogen receptor 16300-0.0050.2099No
86LMNALMNA
Entrez,  Source
lamin A/C6342-0.0050.2072No
87PTMSPTMS
Entrez,  Source
parathymosin6405-0.0060.2028No
88SEC14L3SEC14L3
Entrez,  Source
SEC14-like 3 (S. cerevisiae)6648-0.0100.1850No
89ITGB1ITGB1
Entrez,  Source
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)6774-0.0120.1763No
90HSPB2HSPB2
Entrez,  Source
heat shock 27kDa protein 26942-0.0140.1645No
91CDKN2CCDKN2C
Entrez,  Source
cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)7011-0.0150.1602No
92PIK3C3PIK3C3
Entrez,  Source
phosphoinositide-3-kinase, class 37107-0.0170.1540No
93TPM1TPM1
Entrez,  Source
tropomyosin 1 (alpha)7114-0.0170.1546No
94GHRLGHRL
Entrez,  Source
ghrelin/obestatin preprohormone7162-0.0180.1521No
95KLHDC3KLHDC3
Entrez,  Source
kelch domain containing 37180-0.0180.1518No
96FRAG1FRAG1
Entrez,  Source
-7258-0.0190.1471No
97HAPLN1HAPLN1
Entrez,  Source
hyaluronan and proteoglycan link protein 17300-0.0200.1452No
98CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 67356-0.0200.1422No
99TNNT2TNNT2
Entrez,  Source
troponin T type 2 (cardiac)7380-0.0210.1417No
100CDK2CDK2
Entrez,  Source
cyclin-dependent kinase 27386-0.0210.1426No
101CDH3CDH3
Entrez,  Source
cadherin 3, type 1, P-cadherin (placental)7405-0.0210.1425No
102AP2M1AP2M1
Entrez,  Source
adaptor-related protein complex 2, mu 1 subunit7615-0.0240.1281No
103MID1MID1
Entrez,  Source
midline 1 (Opitz/BBB syndrome)7656-0.0250.1266No
104PHF12PHF12
Entrez,  Source
PHD finger protein 128193-0.0340.0879No
105NTF5NTF5
Entrez,  Source
neurotrophin 5 (neurotrophin 4/5)8214-0.0340.0884No
106NOGNOG
Entrez,  Source
noggin8217-0.0340.0903No
107CHRNA1CHRNA1
Entrez,  Source
cholinergic receptor, nicotinic, alpha 1 (muscle)8410-0.0370.0780No
108SOSTDC1SOSTDC1
Entrez,  Source
sclerostin domain containing 18420-0.0380.0796No
109PDE1APDE1A
Entrez,  Source
phosphodiesterase 1A, calmodulin-dependent8459-0.0380.0790No
110IER5IER5
Entrez,  Source
immediate early response 58527-0.0390.0762No
111SYT8SYT8
Entrez,  Source
synaptotagmin VIII8636-0.0410.0705No
112SPRED1SPRED1
Entrez,  Source
sprouty-related, EVH1 domain containing 18858-0.0450.0564No
113CNTN6CNTN6
Entrez,  Source
contactin 68916-0.0460.0548No
114IL6STIL6ST
Entrez,  Source
interleukin 6 signal transducer (gp130, oncostatin M receptor)9035-0.0480.0487No
115UPK1BUPK1B
Entrez,  Source
uroplakin 1B9040-0.0480.0513No
116CACNA1GCACNA1G
Entrez,  Source
calcium channel, voltage-dependent, alpha 1G subunit9066-0.0480.0523No
117TRPC4TRPC4
Entrez,  Source
transient receptor potential cation channel, subfamily C, member 49085-0.0490.0538No
118RESTREST
Entrez,  Source
RE1-silencing transcription factor9088-0.0490.0566No
119PTHR1PTHR1
Entrez,  Source
parathyroid hormone receptor 19247-0.0520.0477No
120KCNH2KCNH2
Entrez,  Source
potassium voltage-gated channel, subfamily H (eag-related), member 29256-0.0520.0502No
121NFKB2NFKB2
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)9267-0.0520.0525No
122MYH7MYH7
Entrez,  Source
myosin, heavy chain 7, cardiac muscle, beta9348-0.0530.0496No
123MRGPRFMRGPRF
Entrez,  Source
MAS-related GPR, member F9403-0.0540.0488No
124FGFR2FGFR2
Entrez,  Source
ffer syndrome, Jackson-Weiss syndrome)9465-0.0550.0475No
125ELF3ELF3
Entrez,  Source
E74-like factor 3 (ets domain transcription factor, epithelial-specific )9517-0.0560.0470No
126ATRNATRN
Entrez,  Source
attractin9565-0.0570.0468No
127MYH6MYH6
Entrez,  Source
myosin, heavy chain 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)9769-0.0610.0351No
128FGFR4FGFR4
Entrez,  Source
fibroblast growth factor receptor 49846-0.0630.0331No
129DDX3XDDX3X
Entrez,  Source
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked9904-0.0640.0326No
130HMGA1HMGA1
Entrez,  Source
high mobility group AT-hook 19950-0.0650.0331No
131SCNN1ASCNN1A
Entrez,  Source
sodium channel, nonvoltage-gated 1 alpha10199-0.0710.0185No
132SYT2SYT2
Entrez,  Source
synaptotagmin II10209-0.0710.0220No
133PRKCIPRKCI
Entrez,  Source
protein kinase C, iota10240-0.0710.0240No
134SLC12A5SLC12A5
Entrez,  Source
solute carrier family 12, (potassium-chloride transporter) member 510280-0.0720.0254No
135JMJD1CJMJD1C
Entrez,  Source
jumonji domain containing 1C10296-0.0720.0286No
136TMOD3TMOD3
Entrez,  Source
tropomodulin 3 (ubiquitous)10440-0.0760.0223No
137LIFRLIFR
Entrez,  Source
leukemia inhibitory factor receptor alpha10469-0.0770.0248No
138BTF3BTF3
Entrez,  Source
basic transcription factor 310564-0.0790.0224No
139CLDN16CLDN16
Entrez,  Source
claudin 1610660-0.0810.0200No
140FGAFGA
Entrez,  Source
fibrinogen alpha chain10802-0.0850.0144No
141MDKMDK
Entrez,  Source
midkine (neurite growth-promoting factor 2)10921-0.0890.0108No
142APPBP2APPBP2
Entrez,  Source
amyloid beta precursor protein (cytoplasmic tail) binding protein 211073-0.0920.0048No
143PTPN11PTPN11
Entrez,  Source
protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)11140-0.0940.0055No
144ATP5G2ATP5G2
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)11226-0.0960.0048No
145MSX2MSX2
Entrez,  Source
msh homeobox homolog 2 (Drosophila)11269-0.0980.0074No
146SOSTSOST
Entrez,  Source
sclerosteosis11309-0.0990.0104No
147SIPA1SIPA1
Entrez,  Source
signal-induced proliferation-associated gene 111380-0.1010.0111No
148HDGFHDGF
Entrez,  Source
hepatoma-derived growth factor (high-mobility group protein 1-like)11565-0.1080.0036No
149CNN3CNN3
Entrez,  Source
calponin 3, acidic11628-0.1100.0056No
150PTPRJPTPRJ
Entrez,  Source
protein tyrosine phosphatase, receptor type, J11670-0.1120.0091No
151FGF13FGF13
Entrez,  Source
fibroblast growth factor 1311831-0.1180.0041No
152CHD4CHD4
Entrez,  Source
chromodomain helicase DNA binding protein 412051-0.129-0.0048No
153TSPYL4TSPYL4
Entrez,  Source
TSPY-like 412072-0.1300.0014No
154MUSKMUSK
Entrez,  Source
muscle, skeletal, receptor tyrosine kinase12199-0.1370.0000No
155DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)12470-0.153-0.0113No
156BMPR2BMPR2
Entrez,  Source
bone morphogenetic protein receptor, type II (serine/threonine kinase)12471-0.153-0.0022No
157COL5A3COL5A3
Entrez,  Source
collagen, type V, alpha 312502-0.1550.0048No
158LAMB3LAMB3
Entrez,  Source
laminin, beta 312600-0.1630.0072No
159PRKCDBPPRKCDBP
Entrez,  Source
protein kinase C, delta binding protein12625-0.1650.0153No
160NOTCH2NOTCH2
Entrez,  Source
Notch homolog 2 (Drosophila)12769-0.1800.0152No
161ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein12777-0.1810.0255No
162DDIT3DDIT3
Entrez,  Source
DNA-damage-inducible transcript 313182-0.2890.0121No
Table: GSEA details [plain text format]



Fig 2: WGGAATGY_V$TEF1_Q6   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: WGGAATGY_V$TEF1_Q6: Random ES distribution   
Gene set null distribution of ES for WGGAATGY_V$TEF1_Q6