Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_72h.class.cls
#double_gel_8d_versus_double_gel_72h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in classdouble_gel_8d
GeneSetAAAYRNCTG_UNKNOWN
Enrichment Score (ES)0.46160728
Normalized Enrichment Score (NES)1.7671963
Nominal p-value0.0
FDR q-value0.037418775
FWER p-Value0.996
Table: GSEA Results Summary



Fig 1: Enrichment plot: AAAYRNCTG_UNKNOWN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1COL1A2COL1A2
Entrez,  Source
collagen, type I, alpha 231.0460.0734Yes
2TMEM27TMEM27
Entrez,  Source
transmembrane protein 27360.6350.1157Yes
3RAB30RAB30
Entrez,  Source
RAB30, member RAS oncogene family550.5640.1540Yes
4RAPGEF4RAPGEF4
Entrez,  Source
Rap guanine nucleotide exchange factor (GEF) 4780.4720.1856Yes
5PRELPPRELP
Entrez,  Source
proline/arginine-rich end leucine-rich repeat protein1190.4010.2108Yes
6FSTFST
Entrez,  Source
follistatin1320.3880.2372Yes
7CITED2CITED2
Entrez,  Source
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 21450.3670.2621Yes
8CRATCRAT
Entrez,  Source
carnitine acetyltransferase1700.3480.2848Yes
9PPP2R3APPP2R3A
Entrez,  Source
protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha2220.3050.3023Yes
10DNAJB4DNAJB4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 42780.2630.3167Yes
11LTBP1LTBP1
Entrez,  Source
latent transforming growth factor beta binding protein 13720.2190.3250Yes
12TMSB4XTMSB4X
Entrez,  Source
thymosin, beta 4, X-linked4270.2020.3351Yes
13DDAH2DDAH2
Entrez,  Source
dimethylarginine dimethylaminohydrolase 25220.1780.3405Yes
14CRHCRH
Entrez,  Source
corticotropin releasing hormone5410.1730.3514Yes
15TEFTEF
Entrez,  Source
thyrotrophic embryonic factor5920.1660.3593Yes
16PXNPXN
Entrez,  Source
paxillin6170.1630.3689Yes
17FGF10FGF10
Entrez,  Source
fibroblast growth factor 106320.1600.3791Yes
18OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)7080.1500.3840Yes
19LMO7LMO7
Entrez,  Source
LIM domain 77280.1470.3929Yes
20PROK2PROK2
Entrez,  Source
prokineticin 27320.1460.4030Yes
21MYH10MYH10
Entrez,  Source
myosin, heavy chain 10, non-muscle7440.1450.4123Yes
22NCDNNCDN
Entrez,  Source
neurochondrin7740.1420.4202Yes
23KLF5KLF5
Entrez,  Source
Kruppel-like factor 5 (intestinal)7800.1410.4297Yes
24IHPK2IHPK2
Entrez,  Source
inositol hexaphosphate kinase 28350.1360.4352Yes
25FCER1AFCER1A
Entrez,  Source
Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide8440.1350.4441Yes
26B4GALT6B4GALT6
Entrez,  Source
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 611170.1140.4315Yes
27CYBRD1CYBRD1
Entrez,  Source
cytochrome b reductase 111780.1110.4347Yes
28WBP1WBP1
Entrez,  Source
WW domain binding protein 111810.1100.4423Yes
29NR2F1NR2F1
Entrez,  Source
nuclear receptor subfamily 2, group F, member 112340.1080.4459Yes
30ERBB4ERBB4
Entrez,  Source
v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)12490.1070.4524Yes
31MGAT1MGAT1
Entrez,  Source
mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase12880.1050.4569Yes
32GNAQGNAQ
Entrez,  Source
guanine nucleotide binding protein (G protein), q polypeptide13230.1030.4616Yes
33AQP2AQP2
Entrez,  Source
aquaporin 2 (collecting duct)14560.0960.4584No
34MYF6MYF6
Entrez,  Source
myogenic factor 6 (herculin)15360.0920.4588No
35SCN8ASCN8A
Entrez,  Source
sodium channel, voltage gated, type VIII, alpha19200.0760.4351No
36FGF12FGF12
Entrez,  Source
fibroblast growth factor 1219470.0750.4384No
37NRG1NRG1
Entrez,  Source
neuregulin 119670.0740.4422No
38STC2STC2
Entrez,  Source
stanniocalcin 220090.0730.4442No
39TRDNTRDN
Entrez,  Source
triadin20770.0710.4441No
40PRKCQPRKCQ
Entrez,  Source
protein kinase C, theta20870.0700.4483No
41DUSP4DUSP4
Entrez,  Source
dual specificity phosphatase 421620.0680.4475No
42FKRPFKRP
Entrez,  Source
fukutin related protein23350.0640.4390No
43DGKBDGKB
Entrez,  Source
diacylglycerol kinase, beta 90kDa23640.0630.4413No
44CAPN1CAPN1
Entrez,  Source
calpain 1, (mu/I) large subunit26480.0560.4238No
45VIPVIP
Entrez,  Source
vasoactive intestinal peptide30620.0470.3958No
46MYH1MYH1
Entrez,  Source
myosin, heavy chain 1, skeletal muscle, adult30740.0470.3983No
47PPAP2BPPAP2B
Entrez,  Source
phosphatidic acid phosphatase type 2B32670.0430.3867No
48RTN1RTN1
Entrez,  Source
reticulon 133170.0420.3860No
49GDNFGDNF
Entrez,  Source
glial cell derived neurotrophic factor34130.0400.3816No
50PTHR1PTHR1
Entrez,  Source
parathyroid hormone receptor 134370.0400.3827No
51PHEXPHEX
Entrez,  Source
phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets)35180.0380.3793No
52DHHDHH
Entrez,  Source
desert hedgehog homolog (Drosophila)35330.0380.3809No
53ST7LST7L
Entrez,  Source
suppression of tumorigenicity 7 like35780.0370.3802No
54GJB4GJB4
Entrez,  Source
gap junction protein, beta 4 (connexin 30.3)36650.0360.3762No
55PPP1R9BPPP1R9B
Entrez,  Source
protein phosphatase 1, regulatory subunit 9B, spinophilin37260.0350.3741No
56SCN5ASCN5A
Entrez,  Source
sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)37790.0340.3725No
57WNT2BWNT2B
Entrez,  Source
wingless-type MMTV integration site family, member 2B38140.0330.3723No
58RNF146RNF146
Entrez,  Source
ring finger protein 14640050.0300.3600No
59NFATC4NFATC4
Entrez,  Source
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 440510.0290.3587No
60SDCBPSDCBP
Entrez,  Source
syndecan binding protein (syntenin)40640.0290.3598No
61CLDN5CLDN5
Entrez,  Source
claudin 5 (transmembrane protein deleted in velocardiofacial syndrome)40870.0290.3602No
62CRYGDCRYGD
Entrez,  Source
crystallin, gamma D41160.0280.3601No
63ZIC1ZIC1
Entrez,  Source
Zic family member 1 (odd-paired homolog, Drosophila)41450.0280.3599No
64BCL2L1BCL2L1
Entrez,  Source
BCL2-like 142700.0260.3523No
65EIF5EIF5
Entrez,  Source
eukaryotic translation initiation factor 543150.0250.3507No
66COL12A1COL12A1
Entrez,  Source
collagen, type XII, alpha 143630.0240.3489No
67GFI1GFI1
Entrez,  Source
growth factor independent 145530.0220.3361No
68GRIN2BGRIN2B
Entrez,  Source
glutamate receptor, ionotropic, N-methyl D-aspartate 2B48660.0170.3136No
69NMT1NMT1
Entrez,  Source
N-myristoyltransferase 149050.0170.3119No
70SCN3BSCN3B
Entrez,  Source
sodium channel, voltage-gated, type III, beta50970.0140.2984No
71HIP1RHIP1R
Entrez,  Source
huntingtin interacting protein 1 related51450.0130.2958No
72PHF1PHF1
Entrez,  Source
PHD finger protein 152820.0110.2863No
73ID1ID1
Entrez,  Source
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein52960.0110.2861No
74ATPIF1ATPIF1
Entrez,  Source
ATPase inhibitory factor 153460.0100.2831No
75TTC17TTC17
Entrez,  Source
tetratricopeptide repeat domain 1753480.0100.2838No
76ESRRGESRRG
Entrez,  Source
estrogen-related receptor gamma53780.0100.2823No
77EPHA7EPHA7
Entrez,  Source
EPH receptor A754890.0090.2745No
78NFYBNFYB
Entrez,  Source
nuclear transcription factor Y, beta55210.0080.2727No
79CACNB2CACNB2
Entrez,  Source
calcium channel, voltage-dependent, beta 2 subunit55710.0070.2695No
80KCNIP2KCNIP2
Entrez,  Source
Kv channel interacting protein 255800.0070.2695No
81MAP6MAP6
Entrez,  Source
microtubule-associated protein 656030.0070.2683No
82ZFP91ZFP91
Entrez,  Source
zinc finger protein 91 homolog (mouse)56870.0060.2624No
83PFN2PFN2
Entrez,  Source
profilin 257380.0050.2590No
84KCNN3KCNN3
Entrez,  Source
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 360080.0020.2387No
85POFUT1POFUT1
Entrez,  Source
protein O-fucosyltransferase 16279-0.0020.2184No
86DNAJA2DNAJA2
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 26450-0.0040.2057No
87OMGOMG
Entrez,  Source
oligodendrocyte myelin glycoprotein6563-0.0050.1976No
88HOXA5HOXA5
Entrez,  Source
homeobox A56663-0.0070.1906No
89WT1WT1
Entrez,  Source
Wilms tumor 16748-0.0080.1847No
90CNTN1CNTN1
Entrez,  Source
contactin 16807-0.0080.1809No
91HSD3B7HSD3B7
Entrez,  Source
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 76860-0.0090.1776No
92GPR85GPR85
Entrez,  Source
G protein-coupled receptor 856883-0.0090.1766No
93SMARCA2SMARCA2
Entrez,  Source
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 26971-0.0100.1707No
94GABRA3GABRA3
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, alpha 36994-0.0110.1698No
95CRYGSCRYGS
Entrez,  Source
crystallin, gamma S7082-0.0120.1640No
96CLTCCLTC
Entrez,  Source
clathrin, heavy chain (Hc)7295-0.0140.1489No
97NTRK2NTRK2
Entrez,  Source
neurotrophic tyrosine kinase, receptor, type 27314-0.0140.1486No
98PPP3CAPPP3CA
Entrez,  Source
protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)7318-0.0140.1494No
99PDGFRAPDGFRA
Entrez,  Source
platelet-derived growth factor receptor, alpha polypeptide7343-0.0150.1486No
100NDUFS4NDUFS4
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)7499-0.0170.1380No
101BUB3BUB3
Entrez,  Source
BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)7602-0.0180.1315No
102STRN3STRN3
Entrez,  Source
striatin, calmodulin binding protein 37629-0.0190.1309No
103LRRC4LRRC4
Entrez,  Source
leucine rich repeat containing 47670-0.0190.1292No
104NXPH4NXPH4
Entrez,  Source
neurexophilin 47712-0.0200.1275No
105ABT1ABT1
Entrez,  Source
activator of basal transcription 17714-0.0200.1287No
106ADD3ADD3
Entrez,  Source
adducin 3 (gamma)7901-0.0220.1162No
107FOXA1FOXA1
Entrez,  Source
forkhead box A18131-0.0260.1006No
108KITLGKITLG
Entrez,  Source
KIT ligand8254-0.0270.0933No
109SLC4A1SLC4A1
Entrez,  Source
solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)8397-0.0290.0846No
110VDRVDR
Entrez,  Source
vitamin D (1,25- dihydroxyvitamin D3) receptor8460-0.0300.0820No
111ZNF403ZNF403
Entrez,  Source
zinc finger protein 4038532-0.0310.0788No
112BAMBIBAMBI
Entrez,  Source
BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)8540-0.0310.0805No
113NAV2NAV2
Entrez,  Source
neuron navigator 28609-0.0320.0776No
114CASQ2CASQ2
Entrez,  Source
calsequestrin 2 (cardiac muscle)8759-0.0340.0687No
115FGFR1OP2FGFR1OP2
Entrez,  Source
FGFR1 oncogene partner 28927-0.0360.0586No
116CRKLCRKL
Entrez,  Source
v-crk sarcoma virus CT10 oncogene homolog (avian)-like8950-0.0370.0596No
117CMKLR1CMKLR1
Entrez,  Source
chemokine-like receptor 19069-0.0380.0533No
118HN1HN1
Entrez,  Source
hematological and neurological expressed 19156-0.0400.0496No
119MID1MID1
Entrez,  Source
midline 1 (Opitz/BBB syndrome)9243-0.0410.0459No
120DMRT1DMRT1
Entrez,  Source
doublesex and mab-3 related transcription factor 19294-0.0420.0451No
121ATP1A2ATP1A2
Entrez,  Source
ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide9475-0.0450.0346No
122TRIM28TRIM28
Entrez,  Source
tripartite motif-containing 289549-0.0460.0323No
123PDLIM2PDLIM2
Entrez,  Source
PDZ and LIM domain 2 (mystique)9564-0.0460.0344No
124CDH2CDH2
Entrez,  Source
cadherin 2, type 1, N-cadherin (neuronal)9642-0.0480.0320No
125PHC2PHC2
Entrez,  Source
polyhomeotic homolog 2 (Drosophila)9654-0.0480.0345No
126ACVR1ACVR1
Entrez,  Source
activin A receptor, type I9665-0.0480.0371No
127CACNA2D3CACNA2D3
Entrez,  Source
calcium channel, voltage-dependent, alpha 2/delta 3 subunit9729-0.0490.0358No
128MRPL13MRPL13
Entrez,  Source
mitochondrial ribosomal protein L139917-0.0520.0253No
129IGF1IGF1
Entrez,  Source
insulin-like growth factor 1 (somatomedin C)10373-0.060-0.0050No
130HGFHGF
Entrez,  Source
hepatocyte growth factor (hepapoietin A; scatter factor)10486-0.062-0.0092No
131MTA2MTA2
Entrez,  Source
metastasis associated 1 family, member 210748-0.067-0.0242No
132FGFR1FGFR1
Entrez,  Source
fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome)10807-0.069-0.0238No
133MGAT4AMGAT4A
Entrez,  Source
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A10840-0.069-0.0213No
134PCYT1BPCYT1B
Entrez,  Source
phosphate cytidylyltransferase 1, choline, beta10932-0.072-0.0232No
135PMCHPMCH
Entrez,  Source
pro-melanin-concentrating hormone11172-0.078-0.0359No
136XRCC1XRCC1
Entrez,  Source
X-ray repair complementing defective repair in Chinese hamster cells 111227-0.079-0.0344No
137PLEKHM1PLEKHM1
Entrez,  Source
pleckstrin homology domain containing, family M (with RUN domain) member 111344-0.083-0.0374No
138FGD4FGD4
Entrez,  Source
FYVE, RhoGEF and PH domain containing 411381-0.084-0.0342No
139CSNK1A1CSNK1A1
Entrez,  Source
casein kinase 1, alpha 111589-0.089-0.0437No
140PARK2PARK2
Entrez,  Source
Parkinson disease (autosomal recessive, juvenile) 2, parkin11750-0.094-0.0492No
141NMINMI
Entrez,  Source
N-myc (and STAT) interactor11925-0.100-0.0554No
142CDC23CDC23
Entrez,  Source
CDC23 (cell division cycle 23, yeast, homolog)11974-0.102-0.0519No
143SLC6A1SLC6A1
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, GABA), member 111982-0.102-0.0452No
144EFNA1EFNA1
Entrez,  Source
ephrin-A111985-0.102-0.0382No
145EDG5EDG5
Entrez,  Source
endothelial differentiation, sphingolipid G-protein-coupled receptor, 512054-0.105-0.0359No
146CHRM1CHRM1
Entrez,  Source
cholinergic receptor, muscarinic 112093-0.107-0.0313No
147SIPA1SIPA1
Entrez,  Source
signal-induced proliferation-associated gene 112263-0.115-0.0360No
148PLEC1PLEC1
Entrez,  Source
plectin 1, intermediate filament binding protein 500kDa12297-0.116-0.0304No
149DHRS4DHRS4
Entrez,  Source
dehydrogenase/reductase (SDR family) member 412452-0.124-0.0334No
150USP1USP1
Entrez,  Source
ubiquitin specific peptidase 112463-0.125-0.0253No
151NUP54NUP54
Entrez,  Source
nucleoporin 54kDa12635-0.137-0.0287No
152POU4F1POU4F1
Entrez,  Source
POU domain, class 4, transcription factor 112659-0.138-0.0207No
153DYRK1ADYRK1A
Entrez,  Source
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A12862-0.160-0.0248No
154VKORC1L1VKORC1L1
Entrez,  Source
vitamin K epoxide reductase complex, subunit 1-like 112869-0.161-0.0139No
155INHBCINHBC
Entrez,  Source
inhibin, beta C12890-0.163-0.0039No
156DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)12922-0.1680.0055No
157CA3CA3
Entrez,  Source
carbonic anhydrase III, muscle specific13289-0.3730.0040No
Table: GSEA details [plain text format]



Fig 2: AAAYRNCTG_UNKNOWN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: AAAYRNCTG_UNKNOWN: Random ES distribution   
Gene set null distribution of ES for AAAYRNCTG_UNKNOWN