Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | BASEMENT_MEMBRANE |
| Enrichment Score (ES) | 0.70877844 |
| Normalized Enrichment Score (NES) | 1.7586385 |
| Nominal p-value | 0.009380863 |
| FDR q-value | 0.03886034 |
| FWER p-Value | 0.997 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 224 | 0.303 | 0.1362 | Yes |
| 2 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 351 | 0.229 | 0.2426 | Yes |
| 3 | USH2A | USH2A Entrez, Source | Usher syndrome 2A (autosomal recessive, mild) | 425 | 0.202 | 0.3392 | Yes |
| 4 | FBN1 | FBN1 Entrez, Source | fibrillin 1 | 483 | 0.185 | 0.4285 | Yes |
| 5 | SGCE | SGCE Entrez, Source | sarcoglycan, epsilon | 484 | 0.185 | 0.5221 | Yes |
| 6 | COLQ | COLQ Entrez, Source | collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase | 718 | 0.149 | 0.5797 | Yes |
| 7 | EFEMP2 | EFEMP2 Entrez, Source | EGF-containing fibulin-like extracellular matrix protein 2 | 824 | 0.137 | 0.6409 | Yes |
| 8 | SGCG | SGCG Entrez, Source | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) | 1085 | 0.116 | 0.6798 | Yes |
| 9 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 1373 | 0.100 | 0.7088 | Yes |
| 10 | NID2 | NID2 Entrez, Source | nidogen 2 (osteonidogen) | 1925 | 0.075 | 0.7056 | No |
| 11 | TINAG | TINAG Entrez, Source | tubulointerstitial nephritis antigen | 3422 | 0.040 | 0.6135 | No |
| 12 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 6404 | -0.003 | 0.3915 | No |
| 13 | CAV3 | CAV3 Entrez, Source | caveolin 3 | 8955 | -0.037 | 0.2188 | No |
| 14 | SMC3 | SMC3 Entrez, Source | structural maintenance of chromosomes 3 | 9824 | -0.051 | 0.1793 | No |
| 15 | DMD | DMD Entrez, Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | 0.0315 | No |
