Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_72h |
| GeneSet | CMV_IE86_UP |
| Enrichment Score (ES) | -0.48782107 |
| Normalized Enrichment Score (NES) | -1.4674065 |
| Nominal p-value | 0.043956045 |
| FDR q-value | 0.37782115 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | BARD1 | BARD1 Entrez, Source | BRCA1 associated RING domain 1 | 832 | 0.136 | 0.0089 | No |
| 2 | PTTG1 | PTTG1 Entrez, Source | pituitary tumor-transforming 1 | 1734 | 0.083 | -0.0152 | No |
| 3 | MSH2 | MSH2 Entrez, Source | mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) | 3405 | 0.040 | -0.1194 | No |
| 4 | KIAA0101 | KIAA0101 Entrez, Source | KIAA0101 | 3593 | 0.037 | -0.1141 | No |
| 5 | POLD3 | POLD3 Entrez, Source | polymerase (DNA-directed), delta 3, accessory subunit | 3699 | 0.035 | -0.1035 | No |
| 6 | BTG3 | BTG3 Entrez, Source | BTG family, member 3 | 4387 | 0.024 | -0.1425 | No |
| 7 | CASP3 | CASP3 Entrez, Source | caspase 3, apoptosis-related cysteine peptidase | 4567 | 0.022 | -0.1447 | No |
| 8 | RAB27A | RAB27A Entrez, Source | RAB27A, member RAS oncogene family | 5665 | 0.006 | -0.2238 | No |
| 9 | PCNA | PCNA Entrez, Source | proliferating cell nuclear antigen | 5938 | 0.003 | -0.2428 | No |
| 10 | FOXM1 | FOXM1 Entrez, Source | forkhead box M1 | 6751 | -0.008 | -0.2997 | No |
| 11 | UNG | UNG Entrez, Source | uracil-DNA glycosylase | 8535 | -0.031 | -0.4173 | No |
| 12 | UMPS | UMPS Entrez, Source | uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase) | 8780 | -0.035 | -0.4175 | No |
| 13 | H2AFX | H2AFX Entrez, Source | H2A histone family, member X | 8894 | -0.036 | -0.4070 | No |
| 14 | TMEM106C | TMEM106C Entrez, Source | transmembrane protein 106C | 9570 | -0.046 | -0.4334 | No |
| 15 | RFC2 | RFC2 Entrez, Source | replication factor C (activator 1) 2, 40kDa | 9651 | -0.048 | -0.4143 | No |
| 16 | CCNE1 | CCNE1 Entrez, Source | cyclin E1 | 9891 | -0.052 | -0.4051 | No |
| 17 | TYMS | TYMS Entrez, Source | thymidylate synthetase | 10993 | -0.073 | -0.4495 | Yes |
| 18 | RFC3 | RFC3 Entrez, Source | replication factor C (activator 1) 3, 38kDa | 11274 | -0.081 | -0.4282 | Yes |
| 19 | DHFR | DHFR Entrez, Source | dihydrofolate reductase | 11751 | -0.094 | -0.4149 | Yes |
| 20 | CSPG5 | CSPG5 Entrez, Source | chondroitin sulfate proteoglycan 5 (neuroglycan C) | 11966 | -0.101 | -0.3777 | Yes |
| 21 | TFAM | TFAM Entrez, Source | transcription factor A, mitochondrial | 12152 | -0.109 | -0.3343 | Yes |
| 22 | MCM7 | MCM7 Entrez, Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 12174 | -0.110 | -0.2779 | Yes |
| 23 | NASP | NASP Entrez, Source | nuclear autoantigenic sperm protein (histone-binding) | 12677 | -0.140 | -0.2425 | Yes |
| 24 | DCK | DCK Entrez, Source | deoxycytidine kinase | 12784 | -0.151 | -0.1715 | Yes |
| 25 | SLC29A1 | SLC29A1 Entrez, Source | solute carrier family 29 (nucleoside transporters), member 1 | 13027 | -0.192 | -0.0888 | Yes |
| 26 | MCM6 | MCM6 Entrez, Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13114 | -0.214 | 0.0171 | Yes |
