Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | EXTRACELLULAR_MATRIX_PART |
| Enrichment Score (ES) | 0.72275597 |
| Normalized Enrichment Score (NES) | 2.0578742 |
| Nominal p-value | 0.0018939395 |
| FDR q-value | 0.0031625433 |
| FWER p-Value | 0.077 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.2080 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.3539 | Yes |
| 3 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 28 | 0.668 | 0.4860 | Yes |
| 4 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 224 | 0.303 | 0.5317 | Yes |
| 5 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 351 | 0.229 | 0.5679 | Yes |
| 6 | USH2A | USH2A Entrez, Source | Usher syndrome 2A (autosomal recessive, mild) | 425 | 0.202 | 0.6027 | Yes |
| 7 | FBN1 | FBN1 Entrez, Source | fibrillin 1 | 483 | 0.185 | 0.6353 | Yes |
| 8 | SGCE | SGCE Entrez, Source | sarcoglycan, epsilon | 484 | 0.185 | 0.6722 | Yes |
| 9 | COLQ | COLQ Entrez, Source | collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase | 718 | 0.149 | 0.6843 | Yes |
| 10 | EFEMP2 | EFEMP2 Entrez, Source | EGF-containing fibulin-like extracellular matrix protein 2 | 824 | 0.137 | 0.7036 | Yes |
| 11 | SGCG | SGCG Entrez, Source | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) | 1085 | 0.116 | 0.7071 | Yes |
| 12 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 1373 | 0.100 | 0.7055 | Yes |
| 13 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 1404 | 0.098 | 0.7228 | Yes |
| 14 | NID2 | NID2 Entrez, Source | nidogen 2 (osteonidogen) | 1925 | 0.075 | 0.6987 | No |
| 15 | COL11A1 | COL11A1 Entrez, Source | collagen, type XI, alpha 1 | 2472 | 0.060 | 0.6698 | No |
| 16 | COL18A1 | COL18A1 Entrez, Source | collagen, type XVIII, alpha 1 | 3249 | 0.044 | 0.6202 | No |
| 17 | TINAG | TINAG Entrez, Source | tubulointerstitial nephritis antigen | 3422 | 0.040 | 0.6152 | No |
| 18 | COL15A1 | COL15A1 Entrez, Source | collagen, type XV, alpha 1 | 4234 | 0.026 | 0.5596 | No |
| 19 | MUC5AC | MUC5AC Entrez, Source | mucin 5AC, oligomeric mucus/gel-forming | 4677 | 0.020 | 0.5304 | No |
| 20 | LUM | LUM Entrez, Source | lumican | 4728 | 0.019 | 0.5304 | No |
| 21 | COL16A1 | COL16A1 Entrez, Source | collagen, type XVI, alpha 1 | 5051 | 0.015 | 0.5092 | No |
| 22 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 6404 | -0.003 | 0.4083 | No |
| 23 | COL9A1 | COL9A1 Entrez, Source | collagen, type IX, alpha 1 | 6489 | -0.004 | 0.4028 | No |
| 24 | CAV3 | CAV3 Entrez, Source | caveolin 3 | 8955 | -0.037 | 0.2250 | No |
| 25 | SMC3 | SMC3 Entrez, Source | structural maintenance of chromosomes 3 | 9824 | -0.051 | 0.1699 | No |
| 26 | COL10A1 | COL10A1 Entrez, Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 10315 | -0.059 | 0.1448 | No |
| 27 | DMD | DMD Entrez, Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | -0.0175 | No |
| 28 | COL5A3 | COL5A3 Entrez, Source | collagen, type V, alpha 3 | 13187 | -0.246 | 0.0116 | No |
