Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_72h.class.cls
#double_gel_8d_versus_double_gel_72h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in classdouble_gel_8d
GeneSetGALINDO_ACT_UP
Enrichment Score (ES)0.5537506
Normalized Enrichment Score (NES)1.832612
Nominal p-value0.0
FDR q-value0.027268909
FWER p-Value0.908
Table: GSEA Results Summary



Fig 1: Enrichment plot: GALINDO_ACT_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CXCL2CXCL2
Entrez,  Source
chemokine (C-X-C motif) ligand 21180.4020.0638Yes
2MARCKSL1MARCKSL1
Entrez,  Source
MARCKS-like 11220.3990.1358Yes
3EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)1300.3900.2059Yes
4CCL3CCL3
Entrez,  Source
chemokine (C-C motif) ligand 31830.3330.2623Yes
5HERPUD1HERPUD1
Entrez,  Source
homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 14300.2010.2801Yes
6ADORA2BADORA2B
Entrez,  Source
adenosine A2b receptor4820.1860.3098Yes
7IER3IER3
Entrez,  Source
immediate early response 35980.1650.3310Yes
8PDGFAPDGFA
Entrez,  Source
platelet-derived growth factor alpha polypeptide6190.1620.3589Yes
9CSF3CSF3
Entrez,  Source
colony stimulating factor 3 (granulocyte)6850.1520.3815Yes
10PHLDA1PHLDA1
Entrez,  Source
pleckstrin homology-like domain, family A, member 17720.1430.4008Yes
11RHOBRHOB
Entrez,  Source
ras homolog gene family, member B7850.1410.4254Yes
12JUNBJUNB
Entrez,  Source
jun B proto-oncogene8660.1320.4433Yes
13NFKBIANFKBIA
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha8880.1300.4653Yes
14IL1BIL1B
Entrez,  Source
interleukin 1, beta10140.1210.4777Yes
15GADD45BGADD45B
Entrez,  Source
growth arrest and DNA-damage-inducible, beta10450.1180.4968Yes
16SPP1SPP1
Entrez,  Source
secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)11050.1140.5131Yes
17DUSP2DUSP2
Entrez,  Source
dual specificity phosphatase 212080.1090.5251Yes
18DUSP1DUSP1
Entrez,  Source
dual specificity phosphatase 112970.1040.5374Yes
19PLAURPLAUR
Entrez,  Source
plasminogen activator, urokinase receptor13270.1030.5538Yes
20CEBPBCEBPB
Entrez,  Source
CCAAT/enhancer binding protein (C/EBP), beta17740.0820.5349No
21ERRFI1ERRFI1
Entrez,  Source
ERBB receptor feedback inhibitor 120710.0710.5255No
22CD14CD14
Entrez,  Source
CD14 molecule21820.0680.5294No
23CCL5CCL5
Entrez,  Source
chemokine (C-C motif) ligand 524470.0610.5206No
24TMEM49TMEM49
Entrez,  Source
transmembrane protein 4926140.0570.5184No
25NAB2NAB2
Entrez,  Source
NGFI-A binding protein 2 (EGR1 binding protein 2)27300.0540.5196No
26TNFTNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)27700.0530.5263No
27PHLDB1PHLDB1
Entrez,  Source
pleckstrin homology-like domain, family B, member 128050.0530.5333No
28UBCUBC
Entrez,  Source
ubiquitin C31360.0460.5167No
29CD44CD44
Entrez,  Source
CD44 molecule (Indian blood group)31430.0460.5245No
30SQSTM1SQSTM1
Entrez,  Source
sequestosome 132700.0430.5228No
31CCL4CCL4
Entrez,  Source
chemokine (C-C motif) ligand 434680.0390.5151No
32PTPREPTPRE
Entrez,  Source
protein tyrosine phosphatase, receptor type, E36460.0360.5083No
33TXNIPTXNIP
Entrez,  Source
thioredoxin interacting protein39750.0310.4892No
34TNFSF9TNFSF9
Entrez,  Source
tumor necrosis factor (ligand) superfamily, member 942480.0260.4734No
35UBBUBB
Entrez,  Source
ubiquitin B43790.0240.4680No
36SCDSCD
Entrez,  Source
stearoyl-CoA desaturase (delta-9-desaturase)50350.0150.4214No
37SOCS3SOCS3
Entrez,  Source
suppressor of cytokine signaling 352600.0120.4066No
38GADD45AGADD45A
Entrez,  Source
growth arrest and DNA-damage-inducible, alpha57880.0050.3678No
39ODC1ODC1
Entrez,  Source
ornithine decarboxylase 159740.0020.3543No
40BCL10BCL10
Entrez,  Source
B-cell CLL/lymphoma 106386-0.0030.3239No
41EHD1EHD1
Entrez,  Source
EH-domain containing 16660-0.0070.3046No
42BHLHB2BHLHB2
Entrez,  Source
basic helix-loop-helix domain containing, class B, 27852-0.0210.2188No
43FOSL1FOSL1
Entrez,  Source
FOS-like antigen 18279-0.0280.1917No
44BCL2L11BCL2L11
Entrez,  Source
BCL2-like 11 (apoptosis facilitator)8410-0.0300.1873No
45NFKB1NFKB1
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)9252-0.0410.1314No
46SRPRSRPR
Entrez,  Source
signal recognition particle receptor ('docking protein')9820-0.0510.0979No
47TSC22D1TSC22D1
Entrez,  Source
TSC22 domain family, member 19967-0.0530.0965No
48PTGS2PTGS2
Entrez,  Source
prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)10192-0.0570.0898No
49IL1RNIL1RN
Entrez,  Source
interleukin 1 receptor antagonist10196-0.0570.0999No
50VEGFVEGF
Entrez,  Source
vascular endothelial growth factor10686-0.0660.0750No
51PDLIM7PDLIM7
Entrez,  Source
PDZ and LIM domain 7 (enigma)11377-0.0830.0381No
52PIM1PIM1
Entrez,  Source
pim-1 oncogene11624-0.0900.0358No
53RAC2RAC2
Entrez,  Source
ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)11635-0.0900.0513No
54TAPBPTAPBP
Entrez,  Source
TAP binding protein (tapasin)12109-0.1080.0352No
55NFKB2NFKB2
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)12596-0.1340.0229No
56ICAM1ICAM1
Entrez,  Source
intercellular adhesion molecule 1 (CD54), human rhinovirus receptor12996-0.1830.0260No
Table: GSEA details [plain text format]



Fig 2: GALINDO_ACT_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GALINDO_ACT_UP: Random ES distribution   
Gene set null distribution of ES for GALINDO_ACT_UP