Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | HDACI_COLON_TSA2HRS_UP |
| Enrichment Score (ES) | 0.6317045 |
| Normalized Enrichment Score (NES) | 1.870329 |
| Nominal p-value | 0.0017667845 |
| FDR q-value | 0.020389473 |
| FWER p-Value | 0.77 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | SERPINE1 | SERPINE1 Entrez, Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | 12 | 0.803 | 0.1988 | Yes |
| 2 | FOS | FOS Entrez, Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 142 | 0.371 | 0.2812 | Yes |
| 3 | NEU1 | NEU1 Entrez, Source | sialidase 1 (lysosomal sialidase) | 510 | 0.181 | 0.2986 | Yes |
| 4 | SLC20A1 | SLC20A1 Entrez, Source | solute carrier family 20 (phosphate transporter), member 1 | 543 | 0.173 | 0.3392 | Yes |
| 5 | BIRC4 | BIRC4 Entrez, Source | baculoviral IAP repeat-containing 4 | 630 | 0.161 | 0.3727 | Yes |
| 6 | GNAI2 | GNAI2 Entrez, Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 656 | 0.157 | 0.4099 | Yes |
| 7 | RHBDF1 | RHBDF1 Entrez, Source | rhomboid 5 homolog 1 (Drosophila) | 661 | 0.156 | 0.4485 | Yes |
| 8 | PLAG1 | PLAG1 Entrez, Source | pleiomorphic adenoma gene 1 | 756 | 0.144 | 0.4773 | Yes |
| 9 | RHOB | RHOB Entrez, Source | ras homolog gene family, member B | 785 | 0.141 | 0.5102 | Yes |
| 10 | PC | PC Entrez, Source | pyruvate carboxylase | 895 | 0.130 | 0.5342 | Yes |
| 11 | PIP5K2C | PIP5K2C Entrez, Source | phosphatidylinositol-4-phosphate 5-kinase, type II, gamma | 1058 | 0.117 | 0.5512 | Yes |
| 12 | SLC27A1 | SLC27A1 Entrez, Source | solute carrier family 27 (fatty acid transporter), member 1 | 1225 | 0.108 | 0.5657 | Yes |
| 13 | PER1 | PER1 Entrez, Source | period homolog 1 (Drosophila) | 1347 | 0.101 | 0.5818 | Yes |
| 14 | ROCK1 | ROCK1 Entrez, Source | Rho-associated, coiled-coil containing protein kinase 1 | 1513 | 0.093 | 0.5926 | Yes |
| 15 | CALCOCO1 | CALCOCO1 Entrez, Source | calcium binding and coiled-coil domain 1 | 1744 | 0.083 | 0.5959 | Yes |
| 16 | GNPTG | GNPTG Entrez, Source | N-acetylglucosamine-1-phosphate transferase, gamma subunit | 1759 | 0.082 | 0.6153 | Yes |
| 17 | SPARCL1 | SPARCL1 Entrez, Source | SPARC-like 1 (mast9, hevin) | 1992 | 0.073 | 0.6161 | Yes |
| 18 | ERRFI1 | ERRFI1 Entrez, Source | ERBB receptor feedback inhibitor 1 | 2071 | 0.071 | 0.6278 | Yes |
| 19 | INPP5E | INPP5E Entrez, Source | inositol polyphosphate-5-phosphatase, 72 kDa | 2239 | 0.066 | 0.6317 | Yes |
| 20 | CDH11 | CDH11 Entrez, Source | cadherin 11, type 2, OB-cadherin (osteoblast) | 2961 | 0.050 | 0.5898 | No |
| 21 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 3195 | 0.045 | 0.5834 | No |
| 22 | MAP1LC3B | MAP1LC3B Entrez, Source | microtubule-associated protein 1 light chain 3 beta | 3406 | 0.040 | 0.5777 | No |
| 23 | KCNA1 | KCNA1 Entrez, Source | potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) | 3681 | 0.036 | 0.5659 | No |
| 24 | CDH1 | CDH1 Entrez, Source | cadherin 1, type 1, E-cadherin (epithelial) | 3739 | 0.035 | 0.5703 | No |
| 25 | GLI3 | GLI3 Entrez, Source | GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) | 4066 | 0.029 | 0.5530 | No |
| 26 | GNL1 | GNL1 Entrez, Source | guanine nucleotide binding protein-like 1 | 6990 | -0.011 | 0.3360 | No |
| 27 | CYB5B | CYB5B Entrez, Source | cytochrome b5 type B (outer mitochondrial membrane) | 8415 | -0.030 | 0.2364 | No |
| 28 | FLNB | FLNB Entrez, Source | filamin B, beta (actin binding protein 278) | 8603 | -0.032 | 0.2304 | No |
| 29 | CDKN1C | CDKN1C Entrez, Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 8731 | -0.034 | 0.2293 | No |
| 30 | TSNAX | TSNAX Entrez, Source | translin-associated factor X | 8938 | -0.037 | 0.2229 | No |
| 31 | VEGF | VEGF Entrez, Source | vascular endothelial growth factor | 10686 | -0.066 | 0.1081 | No |
| 32 | P4HB | P4HB Entrez, Source | procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide | 10713 | -0.066 | 0.1226 | No |
| 33 | ZUBR1 | ZUBR1 Entrez, Source | zinc finger, UBR1 type 1 | 12114 | -0.108 | 0.0443 | No |
| 34 | ID2 | ID2 Entrez, Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 13029 | -0.193 | 0.0235 | No |
