Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | HSA04512_ECM_RECEPTOR_INTERACTION |
| Enrichment Score (ES) | 0.70513386 |
| Normalized Enrichment Score (NES) | 2.281474 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.0 |
| FWER p-Value | 0.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.1440 | Yes |
| 2 | LAMC2 | LAMC2 Entrez, Source | laminin, gamma 2 | 14 | 0.770 | 0.2494 | Yes |
| 3 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.3511 | Yes |
| 4 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 28 | 0.668 | 0.4423 | Yes |
| 5 | COL4A1 | COL4A1 Entrez, Source | collagen, type IV, alpha 1 | 50 | 0.578 | 0.5204 | Yes |
| 6 | ITGB4 | ITGB4 Entrez, Source | integrin, beta 4 | 121 | 0.401 | 0.5704 | Yes |
| 7 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 224 | 0.303 | 0.6045 | Yes |
| 8 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 351 | 0.229 | 0.6266 | Yes |
| 9 | COL6A2 | COL6A2 Entrez, Source | collagen, type VI, alpha 2 | 460 | 0.193 | 0.6450 | Yes |
| 10 | ITGA9 | ITGA9 Entrez, Source | integrin, alpha 9 | 643 | 0.158 | 0.6532 | Yes |
| 11 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 738 | 0.146 | 0.6662 | Yes |
| 12 | ITGA1 | ITGA1 Entrez, Source | integrin, alpha 1 | 936 | 0.126 | 0.6688 | Yes |
| 13 | SPP1 | SPP1 Entrez, Source | secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) | 1105 | 0.114 | 0.6719 | Yes |
| 14 | SV2B | SV2B Entrez, Source | synaptic vesicle glycoprotein 2B | 1281 | 0.105 | 0.6732 | Yes |
| 15 | COL4A4 | COL4A4 Entrez, Source | collagen, type IV, alpha 4 | 1373 | 0.100 | 0.6801 | Yes |
| 16 | ITGB6 | ITGB6 Entrez, Source | integrin, beta 6 | 1389 | 0.099 | 0.6927 | Yes |
| 17 | COL5A1 | COL5A1 Entrez, Source | collagen, type V, alpha 1 | 1404 | 0.098 | 0.7051 | Yes |
| 18 | FNDC1 | FNDC1 Entrez, Source | fibronectin type III domain containing 1 | 1808 | 0.080 | 0.6858 | No |
| 19 | COL11A1 | COL11A1 Entrez, Source | collagen, type XI, alpha 1 | 2472 | 0.060 | 0.6443 | No |
| 20 | FN1 | FN1 Entrez, Source | fibronectin 1 | 2637 | 0.057 | 0.6397 | No |
| 21 | THBS4 | THBS4 Entrez, Source | thrombospondin 4 | 2746 | 0.054 | 0.6391 | No |
| 22 | CD44 | CD44 Entrez, Source | CD44 molecule (Indian blood group) | 3143 | 0.046 | 0.6155 | No |
| 23 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 3195 | 0.045 | 0.6179 | No |
| 24 | ITGB5 | ITGB5 Entrez, Source | integrin, beta 5 | 3714 | 0.035 | 0.5837 | No |
| 25 | IBSP | IBSP Entrez, Source | integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) | 3929 | 0.031 | 0.5719 | No |
| 26 | GP9 | GP9 Entrez, Source | glycoprotein IX (platelet) | 5039 | 0.015 | 0.4905 | No |
| 27 | CD47 | CD47 Entrez, Source | CD47 molecule | 5066 | 0.014 | 0.4906 | No |
| 28 | VTN | VTN Entrez, Source | vitronectin | 5129 | 0.014 | 0.4878 | No |
| 29 | RELN | RELN Entrez, Source | reelin | 5458 | 0.009 | 0.4643 | No |
| 30 | COL2A1 | COL2A1 Entrez, Source | collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) | 5569 | 0.007 | 0.4571 | No |
| 31 | ITGB1 | ITGB1 Entrez, Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 6253 | -0.001 | 0.4059 | No |
| 32 | LAMB3 | LAMB3 Entrez, Source | laminin, beta 3 | 6323 | -0.002 | 0.4010 | No |
| 33 | LAMA3 | LAMA3 Entrez, Source | laminin, alpha 3 | 6404 | -0.003 | 0.3954 | No |
| 34 | ITGB7 | ITGB7 Entrez, Source | integrin, beta 7 | 6475 | -0.004 | 0.3907 | No |
| 35 | DAG1 | DAG1 Entrez, Source | dystroglycan 1 (dystrophin-associated glycoprotein 1) | 6712 | -0.007 | 0.3740 | No |
| 36 | ITGA6 | ITGA6 Entrez, Source | integrin, alpha 6 | 6967 | -0.010 | 0.3563 | No |
| 37 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 7254 | -0.014 | 0.3366 | No |
| 38 | HMMR | HMMR Entrez, Source | hyaluronan-mediated motility receptor (RHAMM) | 7489 | -0.017 | 0.3213 | No |
| 39 | SDC3 | SDC3 Entrez, Source | syndecan 3 (N-syndecan) | 7719 | -0.020 | 0.3068 | No |
| 40 | SV2A | SV2A Entrez, Source | synaptic vesicle glycoprotein 2A | 8224 | -0.027 | 0.2726 | No |
| 41 | SDC1 | SDC1 Entrez, Source | syndecan 1 | 8470 | -0.031 | 0.2583 | No |
| 42 | SV2C | SV2C Entrez, Source | synaptic vesicle glycoprotein 2C | 8866 | -0.036 | 0.2335 | No |
| 43 | VWF | VWF Entrez, Source | von Willebrand factor | 9242 | -0.041 | 0.2110 | No |
| 44 | THBS2 | THBS2 Entrez, Source | thrombospondin 2 | 9270 | -0.041 | 0.2146 | No |
| 45 | ITGA7 | ITGA7 Entrez, Source | integrin, alpha 7 | 9373 | -0.043 | 0.2129 | No |
| 46 | FNDC5 | FNDC5 Entrez, Source | fibronectin type III domain containing 5 | 9900 | -0.052 | 0.1804 | No |
| 47 | GP5 | GP5 Entrez, Source | glycoprotein V (platelet) | 11061 | -0.075 | 0.1034 | No |
| 48 | TNR | TNR Entrez, Source | tenascin R (restrictin, janusin) | 11126 | -0.076 | 0.1092 | No |
| 49 | SDC2 | SDC2 Entrez, Source | syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan) | 11419 | -0.084 | 0.0988 | No |
| 50 | CHAD | CHAD Entrez, Source | chondroadherin | 11454 | -0.085 | 0.1080 | No |
| 51 | COL5A3 | COL5A3 Entrez, Source | collagen, type V, alpha 3 | 13187 | -0.246 | 0.0117 | No |
