Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | IGLESIAS_E2FMINUS_UP |
Enrichment Score (ES) | 0.6595451 |
Normalized Enrichment Score (NES) | 2.3932543 |
Nominal p-value | 0.0 |
FDR q-value | 0.0 |
FWER p-Value | 0.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.0653 | Yes |
2 | ANXA1 | ANXA1 Entrez,  Source | annexin A1 | 10 | 0.815 | 0.1159 | Yes |
3 | CCND2 | CCND2 Entrez,  Source | cyclin D2 | 11 | 0.815 | 0.1670 | Yes |
4 | COL3A1 | COL3A1 Entrez,  Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.2130 | Yes |
5 | LPL | LPL Entrez,  Source | lipoprotein lipase | 24 | 0.680 | 0.2550 | Yes |
6 | COL5A2 | COL5A2 Entrez,  Source | collagen, type V, alpha 2 | 28 | 0.668 | 0.2966 | Yes |
7 | DAB2 | DAB2 Entrez,  Source | disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) | 31 | 0.661 | 0.3379 | Yes |
8 | EMP1 | EMP1 Entrez,  Source | epithelial membrane protein 1 | 44 | 0.606 | 0.3749 | Yes |
9 | LGALS1 | LGALS1 Entrez,  Source | lectin, galactoside-binding, soluble, 1 (galectin 1) | 47 | 0.597 | 0.4122 | Yes |
10 | COL4A1 | COL4A1 Entrez,  Source | collagen, type IV, alpha 1 | 50 | 0.578 | 0.4482 | Yes |
11 | SLC25A4 | SLC25A4 Entrez,  Source | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | 56 | 0.562 | 0.4830 | Yes |
12 | SERPINH1 | SERPINH1 Entrez,  Source | serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) | 181 | 0.336 | 0.4947 | Yes |
13 | GJA1 | GJA1 Entrez,  Source | gap junction protein, alpha 1, 43kDa (connexin 43) | 196 | 0.324 | 0.5139 | Yes |
14 | SERPINB6A | 227 | 0.302 | 0.5305 | Yes | ||
15 | SPARC | SPARC Entrez,  Source | secreted protein, acidic, cysteine-rich (osteonectin) | 234 | 0.297 | 0.5487 | Yes |
16 | CD9 | CD9 Entrez,  Source | CD9 molecule | 299 | 0.250 | 0.5595 | Yes |
17 | CFD | CFD Entrez,  Source | complement factor D (adipsin) | 337 | 0.234 | 0.5714 | Yes |
18 | S100A6 | S100A6 Entrez,  Source | S100 calcium binding protein A6 | 402 | 0.209 | 0.5797 | Yes |
19 | GSN | GSN Entrez,  Source | gelsolin (amyloidosis, Finnish type) | 417 | 0.205 | 0.5915 | Yes |
20 | TMSB4X | TMSB4X Entrez,  Source | thymosin, beta 4, X-linked | 427 | 0.202 | 0.6034 | Yes |
21 | COL6A2 | COL6A2 Entrez,  Source | collagen, type VI, alpha 2 | 460 | 0.193 | 0.6131 | Yes |
22 | IGSF4 | IGSF4 Entrez,  Source | immunoglobulin superfamily, member 4 | 517 | 0.180 | 0.6201 | Yes |
23 | S100A11 | S100A11 Entrez,  Source | S100 calcium binding protein A11 | 560 | 0.171 | 0.6276 | Yes |
24 | CTSE | CTSE Entrez,  Source | cathepsin E | 580 | 0.167 | 0.6367 | Yes |
25 | GNAI2 | GNAI2 Entrez,  Source | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 656 | 0.157 | 0.6408 | Yes |
26 | COL1A1 | COL1A1 Entrez,  Source | collagen, type I, alpha 1 | 738 | 0.146 | 0.6438 | Yes |
27 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 785 | 0.141 | 0.6492 | Yes |
28 | NFKBIA | NFKBIA Entrez,  Source | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | 888 | 0.130 | 0.6496 | Yes |
29 | ACADL | ACADL Entrez,  Source | acyl-Coenzyme A dehydrogenase, long chain | 892 | 0.130 | 0.6575 | Yes |
30 | GADD45B | GADD45B Entrez,  Source | growth arrest and DNA-damage-inducible, beta | 1045 | 0.118 | 0.6534 | Yes |
31 | ANXA3 | ANXA3 Entrez,  Source | annexin A3 | 1062 | 0.117 | 0.6595 | Yes |
32 | ACTA2 | ACTA2 Entrez,  Source | actin, alpha 2, smooth muscle, aorta | 1439 | 0.096 | 0.6372 | No |
33 | S100A10 | S100A10 Entrez,  Source | S100 calcium binding protein A10 | 1444 | 0.096 | 0.6429 | No |
34 | LAPTM4A | LAPTM4A Entrez,  Source | lysosomal-associated protein transmembrane 4 alpha | 1569 | 0.091 | 0.6392 | No |
35 | CLK1 | CLK1 Entrez,  Source | CDC-like kinase 1 | 1597 | 0.089 | 0.6428 | No |
36 | FBLN2 | FBLN2 Entrez,  Source | fibulin 2 | 1714 | 0.084 | 0.6393 | No |
37 | ANXA2 | ANXA2 Entrez,  Source | annexin A2 | 1825 | 0.079 | 0.6359 | No |
38 | NID2 | NID2 Entrez,  Source | nidogen 2 (osteonidogen) | 1925 | 0.075 | 0.6332 | No |
39 | ALAS2 | ALAS2 Entrez,  Source | aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) | 2100 | 0.070 | 0.6244 | No |
40 | APOE | APOE Entrez,  Source | apolipoprotein E | 2345 | 0.063 | 0.6099 | No |
41 | IGFBP5 | IGFBP5 Entrez,  Source | insulin-like growth factor binding protein 5 | 2713 | 0.055 | 0.5856 | No |
42 | NPTN | NPTN Entrez,  Source | neuroplastin | 2925 | 0.050 | 0.5728 | No |
43 | DCN | DCN Entrez,  Source | decorin | 3029 | 0.048 | 0.5681 | No |
44 | NFIB | NFIB Entrez,  Source | nuclear factor I/B | 3057 | 0.047 | 0.5690 | No |
45 | COL18A1 | COL18A1 Entrez,  Source | collagen, type XVIII, alpha 1 | 3249 | 0.044 | 0.5573 | No |
46 | SS18 | SS18 Entrez,  Source | synovial sarcoma translocation, chromosome 18 | 3259 | 0.043 | 0.5593 | No |
47 | SKP1A | SKP1A Entrez,  Source | S-phase kinase-associated protein 1A (p19A) | 3287 | 0.043 | 0.5600 | No |
48 | PMP22 | PMP22 Entrez,  Source | peripheral myelin protein 22 | 3464 | 0.039 | 0.5492 | No |
49 | CAPZA2 | CAPZA2 Entrez,  Source | capping protein (actin filament) muscle Z-line, alpha 2 | 3750 | 0.034 | 0.5298 | No |
50 | RBBP7 | RBBP7 Entrez,  Source | retinoblastoma binding protein 7 | 3793 | 0.034 | 0.5287 | No |
51 | COL15A1 | COL15A1 Entrez,  Source | collagen, type XV, alpha 1 | 4234 | 0.026 | 0.4971 | No |
52 | CALM2 | CALM2 Entrez,  Source | calmodulin 2 (phosphorylase kinase, delta) | 4699 | 0.020 | 0.4633 | No |
53 | LUM | LUM Entrez,  Source | lumican | 4728 | 0.019 | 0.4624 | No |
54 | ARSA | ARSA Entrez,  Source | arylsulfatase A | 4941 | 0.016 | 0.4474 | No |
55 | B2M | B2M Entrez,  Source | beta-2-microglobulin | 4992 | 0.015 | 0.4445 | No |
56 | DSTN | DSTN Entrez,  Source | destrin (actin depolymerizing factor) | 5007 | 0.015 | 0.4444 | No |
57 | CD47 | CD47 Entrez,  Source | CD47 molecule | 5066 | 0.014 | 0.4410 | No |
58 | CDC42 | CDC42 Entrez,  Source | cell division cycle 42 (GTP binding protein, 25kDa) | 5202 | 0.013 | 0.4315 | No |
59 | ADIPOQ | ADIPOQ Entrez,  Source | adiponectin, C1Q and collagen domain containing | 5204 | 0.013 | 0.4323 | No |
60 | TYROBP | TYROBP Entrez,  Source | TYRO protein tyrosine kinase binding protein | 5388 | 0.010 | 0.4191 | No |
61 | CD53 | CD53 Entrez,  Source | CD53 molecule | 5502 | 0.008 | 0.4110 | No |
62 | LMNA | LMNA Entrez,  Source | lamin A/C | 5805 | 0.004 | 0.3885 | No |
63 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 5938 | 0.003 | 0.3787 | No |
64 | NID1 | NID1 Entrez,  Source | nidogen 1 | 6133 | 0.000 | 0.3641 | No |
65 | ITGB1 | ITGB1 Entrez,  Source | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 6253 | -0.001 | 0.3552 | No |
66 | EVL | EVL Entrez,  Source | Enah/Vasp-like | 6399 | -0.003 | 0.3444 | No |
67 | GAS6 | GAS6 Entrez,  Source | growth arrest-specific 6 | 6432 | -0.004 | 0.3422 | No |
68 | SMAD1 | SMAD1 Entrez,  Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 6658 | -0.007 | 0.3256 | No |
69 | ITM2B | ITM2B Entrez,  Source | integral membrane protein 2B | 7038 | -0.011 | 0.2977 | No |
70 | LAPTM5 | LAPTM5 Entrez,  Source | lysosomal associated multispanning membrane protein 5 | 7239 | -0.014 | 0.2834 | No |
71 | SEPT2 | SEPT2 Entrez,  Source | septin 2 | 7427 | -0.016 | 0.2703 | No |
72 | ACADM | ACADM Entrez,  Source | acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain | 7437 | -0.016 | 0.2706 | No |
73 | MORF4L1 | MORF4L1 Entrez,  Source | mortality factor 4 like 1 | 7518 | -0.017 | 0.2656 | No |
74 | HBA-A1 | 7558 | -0.017 | 0.2637 | No | ||
75 | DNAJA1 | DNAJA1 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 1 | 7683 | -0.019 | 0.2556 | No |
76 | GNB1 | GNB1 Entrez,  Source | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 7870 | -0.022 | 0.2429 | No |
77 | APLP2 | APLP2 Entrez,  Source | amyloid beta (A4) precursor-like protein 2 | 7920 | -0.022 | 0.2406 | No |
78 | CCNG1 | CCNG1 Entrez,  Source | cyclin G1 | 8130 | -0.026 | 0.2264 | No |
79 | KITLG | KITLG Entrez,  Source | KIT ligand | 8254 | -0.027 | 0.2188 | No |
80 | BAX | BAX Entrez,  Source | BCL2-associated X protein | 8544 | -0.031 | 0.1989 | No |
81 | BZW1 | BZW1 Entrez,  Source | basic leucine zipper and W2 domains 1 | 8626 | -0.033 | 0.1948 | No |
82 | ELN | ELN Entrez,  Source | elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) | 8687 | -0.033 | 0.1924 | No |
83 | SCG2 | SCG2 Entrez,  Source | secretogranin II (chromogranin C) | 8730 | -0.034 | 0.1914 | No |
84 | CDKN1C | CDKN1C Entrez,  Source | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 8731 | -0.034 | 0.1935 | No |
85 | C3 | C3 Entrez,  Source | complement component 3 | 8749 | -0.034 | 0.1943 | No |
86 | CNN3 | CNN3 Entrez,  Source | calponin 3, acidic | 8886 | -0.036 | 0.1863 | No |
87 | SERPINF1 | SERPINF1 Entrez,  Source | serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 | 8926 | -0.036 | 0.1857 | No |
88 | CACYBP | CACYBP Entrez,  Source | calcyclin binding protein | 9476 | -0.045 | 0.1470 | No |
89 | ANGPTL2 | ANGPTL2 Entrez,  Source | angiopoietin-like 2 | 9536 | -0.046 | 0.1454 | No |
90 | CTSZ | CTSZ Entrez,  Source | cathepsin Z | 9975 | -0.053 | 0.1156 | No |
91 | TIMM22 | TIMM22 Entrez,  Source | translocase of inner mitochondrial membrane 22 homolog (yeast) | 10027 | -0.054 | 0.1152 | No |
92 | RPS14 | RPS14 Entrez,  Source | ribosomal protein S14 | 10205 | -0.057 | 0.1053 | No |
93 | TUBB | TUBB Entrez,  Source | tubulin, beta | 10340 | -0.059 | 0.0989 | No |
94 | C1QB | C1QB Entrez,  Source | complement component 1, q subcomponent, B chain | 10939 | -0.072 | 0.0582 | No |
95 | LYL1 | LYL1 Entrez,  Source | lymphoblastic leukemia derived sequence 1 | 11347 | -0.083 | 0.0327 | No |
96 | CTSS | CTSS Entrez,  Source | cathepsin S | 12022 | -0.104 | -0.0118 | No |
97 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 12174 | -0.110 | -0.0162 | No |
98 | LCP1 | LCP1 Entrez,  Source | lymphocyte cytosolic protein 1 (L-plastin) | 12229 | -0.113 | -0.0133 | No |
99 | CES3 | CES3 Entrez,  Source | carboxylesterase 3 (brain) | 12329 | -0.117 | -0.0134 | No |
100 | CSRP1 | CSRP1 Entrez,  Source | cysteine and glycine-rich protein 1 | 12583 | -0.134 | -0.0241 | No |
101 | CDO1 | CDO1 Entrez,  Source | cysteine dioxygenase, type I | 12594 | -0.134 | -0.0165 | No |
102 | IGFBP4 | IGFBP4 Entrez,  Source | insulin-like growth factor binding protein 4 | 12663 | -0.138 | -0.0129 | No |
103 | RBP1 | RBP1 Entrez,  Source | retinol binding protein 1, cellular | 12674 | -0.139 | -0.0050 | No |
104 | UGDH | UGDH Entrez,  Source | UDP-glucose dehydrogenase | 12882 | -0.162 | -0.0104 | No |
105 | ID2 | ID2 Entrez,  Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 13029 | -0.193 | -0.0094 | No |
106 | FMO1 | FMO1 Entrez,  Source | flavin containing monooxygenase 1 | 13185 | -0.244 | -0.0058 | No |
107 | ENPP2 | ENPP2 Entrez,  Source | ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) | 13234 | -0.281 | 0.0082 | No |