Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | INFLAMMATORY_RESPONSE_PATHWAY |
| Enrichment Score (ES) | 0.723822 |
| Normalized Enrichment Score (NES) | 1.9591742 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.008240838 |
| FWER p-Value | 0.339 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | LAMC2 | LAMC2 Entrez, Source | laminin, gamma 2 | 14 | 0.770 | 0.2430 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.4766 | Yes |
| 3 | LAMC1 | LAMC1 Entrez, Source | laminin, gamma 1 (formerly LAMB2) | 224 | 0.303 | 0.5570 | Yes |
| 4 | LAMB2 | LAMB2 Entrez, Source | laminin, beta 2 (laminin S) | 351 | 0.229 | 0.6202 | Yes |
| 5 | CD40 | CD40 Entrez, Source | CD40 molecule, TNF receptor superfamily member 5 | 467 | 0.191 | 0.6719 | Yes |
| 6 | COL1A1 | COL1A1 Entrez, Source | collagen, type I, alpha 1 | 738 | 0.146 | 0.6978 | Yes |
| 7 | IL2RG | IL2RG Entrez, Source | interleukin 2 receptor, gamma (severe combined immunodeficiency) | 927 | 0.127 | 0.7238 | Yes |
| 8 | IL5RA | IL5RA Entrez, Source | interleukin 5 receptor, alpha | 1677 | 0.086 | 0.6948 | No |
| 9 | FN1 | FN1 Entrez, Source | fibronectin 1 | 2637 | 0.057 | 0.6407 | No |
| 10 | IFNG | IFNG Entrez, Source | interferon, gamma | 2940 | 0.050 | 0.6339 | No |
| 11 | CD40LG | CD40LG Entrez, Source | CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome) | 3519 | 0.038 | 0.6026 | No |
| 12 | IL2RB | IL2RB Entrez, Source | interleukin 2 receptor, beta | 4429 | 0.023 | 0.5418 | No |
| 13 | TNFRSF1A | TNFRSF1A Entrez, Source | tumor necrosis factor receptor superfamily, member 1A | 4794 | 0.018 | 0.5203 | No |
| 14 | VTN | VTN Entrez, Source | vitronectin | 5129 | 0.014 | 0.4995 | No |
| 15 | IL2RA | IL2RA Entrez, Source | interleukin 2 receptor, alpha | 6388 | -0.003 | 0.4060 | No |
| 16 | LAMA5 | LAMA5 Entrez, Source | laminin, alpha 5 | 7254 | -0.014 | 0.3454 | No |
| 17 | IL5 | IL5 Entrez, Source | interleukin 5 (colony-stimulating factor, eosinophil) | 7748 | -0.020 | 0.3147 | No |
| 18 | IL2 | IL2 Entrez, Source | interleukin 2 | 8058 | -0.024 | 0.2992 | No |
| 19 | CD80 | CD80 Entrez, Source | CD80 molecule | 8389 | -0.029 | 0.2837 | No |
| 20 | IL4R | IL4R Entrez, Source | interleukin 4 receptor | 9332 | -0.042 | 0.2263 | No |
| 21 | IL4 | IL4 Entrez, Source | interleukin 4 | 10138 | -0.056 | 0.1835 | No |
| 22 | CD86 | CD86 Entrez, Source | CD86 molecule | 10637 | -0.065 | 0.1667 | No |
| 23 | CD28 | CD28 Entrez, Source | CD28 molecule | 12261 | -0.114 | 0.0812 | No |
