Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | IRITANI_ADPROX_VASC |
Enrichment Score (ES) | 0.5893472 |
Normalized Enrichment Score (NES) | 2.1605918 |
Nominal p-value | 0.0 |
FDR q-value | 9.356478E-4 |
FWER p-Value | 0.01 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.0752 | Yes |
2 | CLDN7 | CLDN7 Entrez,  Source | claudin 7 | 7 | 0.940 | 0.1427 | Yes |
3 | SERPINE1 | SERPINE1 Entrez,  Source | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | 12 | 0.803 | 0.2003 | Yes |
4 | LAMC2 | LAMC2 Entrez,  Source | laminin, gamma 2 | 14 | 0.770 | 0.2557 | Yes |
5 | PROCR | PROCR Entrez,  Source | protein C receptor, endothelial (EPCR) | 26 | 0.669 | 0.3031 | Yes |
6 | LDHB | LDHB Entrez,  Source | lactate dehydrogenase B | 61 | 0.555 | 0.3406 | Yes |
7 | CCL2 | CCL2 Entrez,  Source | chemokine (C-C motif) ligand 2 | 76 | 0.477 | 0.3739 | Yes |
8 | BGN | BGN Entrez,  Source | biglycan | 143 | 0.369 | 0.3955 | Yes |
9 | PRNP | PRNP Entrez,  Source | prion protein (p27-30) (Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) | 171 | 0.348 | 0.4186 | Yes |
10 | RGS4 | RGS4 Entrez,  Source | regulator of G-protein signalling 4 | 219 | 0.308 | 0.4372 | Yes |
11 | TAGLN | TAGLN Entrez,  Source | transgelin | 253 | 0.280 | 0.4549 | Yes |
12 | LPXN | LPXN Entrez,  Source | leupaxin | 317 | 0.240 | 0.4675 | Yes |
13 | BTG2 | BTG2 Entrez,  Source | BTG family, member 2 | 326 | 0.238 | 0.4840 | Yes |
14 | JUN | JUN Entrez,  Source | jun oncogene | 458 | 0.194 | 0.4881 | Yes |
15 | VEGFC | VEGFC Entrez,  Source | vascular endothelial growth factor C | 496 | 0.183 | 0.4984 | Yes |
16 | IGF2BP3 | IGF2BP3 Entrez,  Source | insulin-like growth factor 2 mRNA binding protein 3 | 561 | 0.171 | 0.5059 | Yes |
17 | IER3 | IER3 Entrez,  Source | immediate early response 3 | 598 | 0.165 | 0.5151 | Yes |
18 | FLT1 | FLT1 Entrez,  Source | fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) | 699 | 0.150 | 0.5184 | Yes |
19 | CD59 | CD59 Entrez,  Source | CD59 molecule, complement regulatory protein | 710 | 0.149 | 0.5284 | Yes |
20 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 785 | 0.141 | 0.5330 | Yes |
21 | NR2F2 | NR2F2 Entrez,  Source | nuclear receptor subfamily 2, group F, member 2 | 806 | 0.139 | 0.5415 | Yes |
22 | PLA2G4A | PLA2G4A Entrez,  Source | phospholipase A2, group IVA (cytosolic, calcium-dependent) | 812 | 0.139 | 0.5511 | Yes |
23 | EIF2B2 | EIF2B2 Entrez,  Source | eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa | 924 | 0.127 | 0.5519 | Yes |
24 | RGS10 | RGS10 Entrez,  Source | regulator of G-protein signalling 10 | 1009 | 0.121 | 0.5542 | Yes |
25 | BASP1 | BASP1 Entrez,  Source | brain abundant, membrane attached signal protein 1 | 1050 | 0.118 | 0.5597 | Yes |
26 | ANXA3 | ANXA3 Entrez,  Source | annexin A3 | 1062 | 0.117 | 0.5673 | Yes |
27 | ARL6IP5 | ARL6IP5 Entrez,  Source | ADP-ribosylation-like factor 6 interacting protein 5 | 1126 | 0.113 | 0.5707 | Yes |
28 | PRG1 | PRG1 Entrez,  Source | proteoglycan 1, secretory granule | 1285 | 0.105 | 0.5663 | Yes |
29 | MMP14 | MMP14 Entrez,  Source | matrix metallopeptidase 14 (membrane-inserted) | 1312 | 0.104 | 0.5718 | Yes |
30 | SLC38A6 | SLC38A6 Entrez,  Source | solute carrier family 38, member 6 | 1356 | 0.101 | 0.5758 | Yes |
31 | ACTA2 | ACTA2 Entrez,  Source | actin, alpha 2, smooth muscle, aorta | 1439 | 0.096 | 0.5766 | Yes |
32 | LAMP2 | LAMP2 Entrez,  Source | lysosomal-associated membrane protein 2 | 1467 | 0.095 | 0.5814 | Yes |
33 | CAPG | CAPG Entrez,  Source | capping protein (actin filament), gelsolin-like | 1510 | 0.093 | 0.5850 | Yes |
34 | CXCL1 | CXCL1 Entrez,  Source | chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) | 1541 | 0.092 | 0.5893 | Yes |
35 | LTBP2 | LTBP2 Entrez,  Source | latent transforming growth factor beta binding protein 2 | 1980 | 0.074 | 0.5616 | No |
36 | ECE1 | ECE1 Entrez,  Source | endothelin converting enzyme 1 | 2048 | 0.071 | 0.5617 | No |
37 | TACSTD2 | TACSTD2 Entrez,  Source | tumor-associated calcium signal transducer 2 | 2200 | 0.067 | 0.5551 | No |
38 | CXCR4 | CXCR4 Entrez,  Source | chemokine (C-X-C motif) receptor 4 | 2597 | 0.058 | 0.5294 | No |
39 | SLC1A1 | SLC1A1 Entrez,  Source | solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 | 2638 | 0.057 | 0.5304 | No |
40 | PKIA | PKIA Entrez,  Source | protein kinase (cAMP-dependent, catalytic) inhibitor alpha | 2727 | 0.054 | 0.5277 | No |
41 | ANXA6 | ANXA6 Entrez,  Source | annexin A6 | 2949 | 0.050 | 0.5146 | No |
42 | CD44 | CD44 Entrez,  Source | CD44 molecule (Indian blood group) | 3143 | 0.046 | 0.5033 | No |
43 | LPHN2 | LPHN2 Entrez,  Source | latrophilin 2 | 3268 | 0.043 | 0.4970 | No |
44 | CLU | CLU Entrez,  Source | clusterin | 3299 | 0.043 | 0.4978 | No |
45 | UPP1 | UPP1 Entrez,  Source | uridine phosphorylase 1 | 3489 | 0.039 | 0.4864 | No |
46 | ITGB5 | ITGB5 Entrez,  Source | integrin, beta 5 | 3714 | 0.035 | 0.4720 | No |
47 | SELP | SELP Entrez,  Source | selectin P (granule membrane protein 140kDa, antigen CD62) | 3754 | 0.034 | 0.4715 | No |
48 | ICAM2 | ICAM2 Entrez,  Source | intercellular adhesion molecule 2 | 4541 | 0.022 | 0.4137 | No |
49 | PFKM | PFKM Entrez,  Source | phosphofructokinase, muscle | 4734 | 0.019 | 0.4006 | No |
50 | ATP1B1 | ATP1B1 Entrez,  Source | ATPase, Na+/K+ transporting, beta 1 polypeptide | 4788 | 0.018 | 0.3979 | No |
51 | NMT2 | NMT2 Entrez,  Source | N-myristoyltransferase 2 | 4917 | 0.016 | 0.3894 | No |
52 | IL6 | IL6 Entrez,  Source | interleukin 6 (interferon, beta 2) | 4953 | 0.016 | 0.3879 | No |
53 | ARHGDIB | ARHGDIB Entrez,  Source | Rho GDP dissociation inhibitor (GDI) beta | 5075 | 0.014 | 0.3798 | No |
54 | MT3 | MT3 Entrez,  Source | metallothionein 3 (growth inhibitory factor (neurotrophic)) | 5102 | 0.014 | 0.3789 | No |
55 | BMP6 | BMP6 Entrez,  Source | bone morphogenetic protein 6 | 5474 | 0.009 | 0.3515 | No |
56 | TCN2 | TCN2 Entrez,  Source | transcobalamin II; macrocytic anemia | 5550 | 0.008 | 0.3464 | No |
57 | AXL | AXL Entrez,  Source | AXL receptor tyrosine kinase | 5649 | 0.006 | 0.3394 | No |
58 | PFN2 | PFN2 Entrez,  Source | profilin 2 | 5738 | 0.005 | 0.3331 | No |
59 | GADD45A | GADD45A Entrez,  Source | growth arrest and DNA-damage-inducible, alpha | 5788 | 0.005 | 0.3298 | No |
60 | TPM1 | TPM1 Entrez,  Source | tropomyosin 1 (alpha) | 5926 | 0.003 | 0.3197 | No |
61 | NISCH | NISCH Entrez,  Source | nischarin | 6031 | 0.002 | 0.3119 | No |
62 | CAP2 | CAP2 Entrez,  Source | CAP, adenylate cyclase-associated protein, 2 (yeast) | 6076 | 0.001 | 0.3087 | No |
63 | ENO2 | ENO2 Entrez,  Source | enolase 2 (gamma, neuronal) | 6221 | -0.001 | 0.2979 | No |
64 | TGFBI | TGFBI Entrez,  Source | transforming growth factor, beta-induced, 68kDa | 6410 | -0.003 | 0.2839 | No |
65 | SRPX | SRPX Entrez,  Source | sushi-repeat-containing protein, X-linked | 6552 | -0.005 | 0.2736 | No |
66 | ALDH2 | ALDH2 Entrez,  Source | aldehyde dehydrogenase 2 family (mitochondrial) | 6734 | -0.007 | 0.2605 | No |
67 | MT1A | MT1A Entrez,  Source | metallothionein 1A (functional) | 6871 | -0.009 | 0.2509 | No |
68 | LAMA5 | LAMA5 Entrez,  Source | laminin, alpha 5 | 7254 | -0.014 | 0.2230 | No |
69 | MAPKAPK3 | MAPKAPK3 Entrez,  Source | mitogen-activated protein kinase-activated protein kinase 3 | 7267 | -0.014 | 0.2231 | No |
70 | TFEC | TFEC Entrez,  Source | transcription factor EC | 7275 | -0.014 | 0.2236 | No |
71 | CDKN1A | CDKN1A Entrez,  Source | cyclin-dependent kinase inhibitor 1A (p21, Cip1) | 7976 | -0.023 | 0.1724 | No |
72 | TXNRD2 | TXNRD2 Entrez,  Source | thioredoxin reductase 2 | 8114 | -0.025 | 0.1639 | No |
73 | SMAD3 | SMAD3 Entrez,  Source | SMAD, mothers against DPP homolog 3 (Drosophila) | 8872 | -0.036 | 0.1093 | No |
74 | ANPEP | ANPEP Entrez,  Source | alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) | 8993 | -0.037 | 0.1029 | No |
75 | IL4R | IL4R Entrez,  Source | interleukin 4 receptor | 9332 | -0.042 | 0.0804 | No |
76 | PGF | PGF Entrez,  Source | placental growth factor, vascular endothelial growth factor-related protein | 9350 | -0.043 | 0.0822 | No |
77 | MLLT11 | MLLT11 Entrez,  Source | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 | 9394 | -0.043 | 0.0821 | No |
78 | UCHL1 | UCHL1 Entrez,  Source | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) | 9466 | -0.044 | 0.0799 | No |
79 | CHST1 | CHST1 Entrez,  Source | carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 | 9600 | -0.047 | 0.0733 | No |
80 | CDH2 | CDH2 Entrez,  Source | cadherin 2, type 1, N-cadherin (neuronal) | 9642 | -0.048 | 0.0736 | No |
81 | TGM2 | TGM2 Entrez,  Source | transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) | 9694 | -0.049 | 0.0733 | No |
82 | FHL2 | FHL2 Entrez,  Source | four and a half LIM domains 2 | 9790 | -0.050 | 0.0697 | No |
83 | PDLIM4 | PDLIM4 Entrez,  Source | PDZ and LIM domain 4 | 10146 | -0.056 | 0.0469 | No |
84 | CSPG2 | CSPG2 Entrez,  Source | chondroitin sulfate proteoglycan 2 (versican) | 10417 | -0.061 | 0.0309 | No |
85 | PLAU | PLAU Entrez,  Source | plasminogen activator, urokinase | 10548 | -0.063 | 0.0256 | No |
86 | MVP | MVP Entrez,  Source | major vault protein | 10938 | -0.072 | 0.0014 | No |
87 | LYL1 | LYL1 Entrez,  Source | lymphoblastic leukemia derived sequence 1 | 11347 | -0.083 | -0.0234 | No |
88 | CTSC | CTSC Entrez,  Source | cathepsin C | 11373 | -0.083 | -0.0193 | No |
89 | SLC6A8 | SLC6A8 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, creatine), member 8 | 11625 | -0.090 | -0.0318 | No |
90 | RAC2 | RAC2 Entrez,  Source | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) | 11635 | -0.090 | -0.0260 | No |
91 | SORD | SORD Entrez,  Source | sorbitol dehydrogenase | 11977 | -0.102 | -0.0444 | No |
92 | EFEMP1 | EFEMP1 Entrez,  Source | EGF-containing fibulin-like extracellular matrix protein 1 | 12182 | -0.111 | -0.0518 | No |
93 | AGRIN | AGRIN Entrez,  Source | agrin | 12183 | -0.111 | -0.0439 | No |
94 | SELE | SELE Entrez,  Source | selectin E (endothelial adhesion molecule 1) | 12624 | -0.136 | -0.0673 | No |
95 | FAP | FAP Entrez,  Source | fibroblast activation protein, alpha | 12774 | -0.149 | -0.0678 | No |
96 | ICAM1 | ICAM1 Entrez,  Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 12996 | -0.183 | -0.0713 | No |
97 | SLC3A2 | SLC3A2 Entrez,  Source | solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 | 13019 | -0.189 | -0.0593 | No |
98 | NRCAM | NRCAM Entrez,  Source | neuronal cell adhesion molecule | 13028 | -0.193 | -0.0460 | No |
99 | GBP2 | GBP2 Entrez,  Source | guanylate binding protein 2, interferon-inducible | 13292 | -0.382 | -0.0384 | No |
100 | SLC7A7 | SLC7A7 Entrez,  Source | solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 | 13328 | -0.584 | 0.0011 | No |