Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | PROTEINACEOUS_EXTRACELLULAR_MATRIX |
Enrichment Score (ES) | 0.6367387 |
Normalized Enrichment Score (NES) | 2.0697072 |
Nominal p-value | 0.0 |
FDR q-value | 0.0029654016 |
FWER p-Value | 0.064 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | COL1A2 | COL1A2 Entrez,  Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.1283 | Yes |
2 | COL3A1 | COL3A1 Entrez,  Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.2180 | Yes |
3 | COL5A2 | COL5A2 Entrez,  Source | collagen, type V, alpha 2 | 28 | 0.668 | 0.2992 | Yes |
4 | CTGF | CTGF Entrez,  Source | connective tissue growth factor | 32 | 0.660 | 0.3800 | Yes |
5 | MGP | MGP Entrez,  Source | matrix Gla protein | 62 | 0.533 | 0.4433 | Yes |
6 | PRELP | PRELP Entrez,  Source | proline/arginine-rich end leucine-rich repeat protein | 119 | 0.401 | 0.4884 | Yes |
7 | LAMC1 | LAMC1 Entrez,  Source | laminin, gamma 1 (formerly LAMB2) | 224 | 0.303 | 0.5178 | Yes |
8 | LAMB2 | LAMB2 Entrez,  Source | laminin, beta 2 (laminin S) | 351 | 0.229 | 0.5364 | Yes |
9 | USH2A | USH2A Entrez,  Source | Usher syndrome 2A (autosomal recessive, mild) | 425 | 0.202 | 0.5558 | Yes |
10 | FBN1 | FBN1 Entrez,  Source | fibrillin 1 | 483 | 0.185 | 0.5743 | Yes |
11 | SGCE | SGCE Entrez,  Source | sarcoglycan, epsilon | 484 | 0.185 | 0.5970 | Yes |
12 | ADAMTS5 | ADAMTS5 Entrez,  Source | ADAM metallopeptidase with thrombospondin type 1 motif, 5 (aggrecanase-2) | 609 | 0.164 | 0.6078 | Yes |
13 | COLQ | COLQ Entrez,  Source | collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase | 718 | 0.149 | 0.6179 | Yes |
14 | EFEMP2 | EFEMP2 Entrez,  Source | EGF-containing fibulin-like extracellular matrix protein 2 | 824 | 0.137 | 0.6268 | Yes |
15 | DSPP | DSPP Entrez,  Source | dentin sialophosphoprotein | 1020 | 0.120 | 0.6269 | Yes |
16 | SGCG | SGCG Entrez,  Source | sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) | 1085 | 0.116 | 0.6363 | Yes |
17 | COL4A4 | COL4A4 Entrez,  Source | collagen, type IV, alpha 4 | 1373 | 0.100 | 0.6269 | Yes |
18 | COL5A1 | COL5A1 Entrez,  Source | collagen, type V, alpha 1 | 1404 | 0.098 | 0.6367 | Yes |
19 | IMPG1 | IMPG1 Entrez,  Source | interphotoreceptor matrix proteoglycan 1 | 1697 | 0.085 | 0.6252 | No |
20 | FBLN2 | FBLN2 Entrez,  Source | fibulin 2 | 1714 | 0.084 | 0.6343 | No |
21 | NID2 | NID2 Entrez,  Source | nidogen 2 (osteonidogen) | 1925 | 0.075 | 0.6278 | No |
22 | LTBP2 | LTBP2 Entrez,  Source | latent transforming growth factor beta binding protein 2 | 1980 | 0.074 | 0.6328 | No |
23 | TGFB1 | TGFB1 Entrez,  Source | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 2079 | 0.071 | 0.6341 | No |
24 | DMP1 | DMP1 Entrez,  Source | dentin matrix acidic phosphoprotein | 2433 | 0.061 | 0.6150 | No |
25 | COL11A1 | COL11A1 Entrez,  Source | collagen, type XI, alpha 1 | 2472 | 0.060 | 0.6196 | No |
26 | THBS4 | THBS4 Entrez,  Source | thrombospondin 4 | 2746 | 0.054 | 0.6057 | No |
27 | ECM1 | ECM1 Entrez,  Source | extracellular matrix protein 1 | 2924 | 0.050 | 0.5985 | No |
28 | COL18A1 | COL18A1 Entrez,  Source | collagen, type XVIII, alpha 1 | 3249 | 0.044 | 0.5795 | No |
29 | SPG7 | SPG7 Entrez,  Source | spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive) | 3302 | 0.043 | 0.5808 | No |
30 | TINAG | TINAG Entrez,  Source | tubulointerstitial nephritis antigen | 3422 | 0.040 | 0.5768 | No |
31 | IMPG2 | IMPG2 Entrez,  Source | interphotoreceptor matrix proteoglycan 2 | 3469 | 0.039 | 0.5781 | No |
32 | MMP10 | MMP10 Entrez,  Source | matrix metallopeptidase 10 (stromelysin 2) | 4140 | 0.028 | 0.5312 | No |
33 | COL15A1 | COL15A1 Entrez,  Source | collagen, type XV, alpha 1 | 4234 | 0.026 | 0.5274 | No |
34 | HAPLN1 | HAPLN1 Entrez,  Source | hyaluronan and proteoglycan link protein 1 | 4343 | 0.025 | 0.5223 | No |
35 | MUC5AC | MUC5AC Entrez,  Source | mucin 5AC, oligomeric mucus/gel-forming | 4677 | 0.020 | 0.4997 | No |
36 | LUM | LUM Entrez,  Source | lumican | 4728 | 0.019 | 0.4983 | No |
37 | COL16A1 | COL16A1 Entrez,  Source | collagen, type XVI, alpha 1 | 5051 | 0.015 | 0.4759 | No |
38 | MEPE | MEPE Entrez,  Source | matrix, extracellular phosphoglycoprotein with ASARM motif (bone) | 5473 | 0.009 | 0.4453 | No |
39 | LAMA3 | LAMA3 Entrez,  Source | laminin, alpha 3 | 6404 | -0.003 | 0.3757 | No |
40 | COL9A1 | COL9A1 Entrez,  Source | collagen, type IX, alpha 1 | 6489 | -0.004 | 0.3699 | No |
41 | TFPI2 | TFPI2 Entrez,  Source | tissue factor pathway inhibitor 2 | 6771 | -0.008 | 0.3497 | No |
42 | MMP11 | MMP11 Entrez,  Source | matrix metallopeptidase 11 (stromelysin 3) | 6969 | -0.010 | 0.3361 | No |
43 | FBLN5 | FBLN5 Entrez,  Source | fibulin 5 | 6975 | -0.010 | 0.3370 | No |
44 | MATN1 | MATN1 Entrez,  Source | matrilin 1, cartilage matrix protein | 8575 | -0.032 | 0.2206 | No |
45 | CAV3 | CAV3 Entrez,  Source | caveolin 3 | 8955 | -0.037 | 0.1966 | No |
46 | FMOD | FMOD Entrez,  Source | fibromodulin | 9724 | -0.049 | 0.1448 | No |
47 | SMC3 | SMC3 Entrez,  Source | structural maintenance of chromosomes 3 | 9824 | -0.051 | 0.1436 | No |
48 | CHI3L1 | CHI3L1 Entrez,  Source | chitinase 3-like 1 (cartilage glycoprotein-39) | 9869 | -0.051 | 0.1466 | No |
49 | COL10A1 | COL10A1 Entrez,  Source | collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) | 10315 | -0.059 | 0.1203 | No |
50 | COMP | COMP Entrez,  Source | cartilage oligomeric matrix protein | 10344 | -0.059 | 0.1255 | No |
51 | FBN2 | FBN2 Entrez,  Source | fibrillin 2 (congenital contractural arachnodactyly) | 10607 | -0.064 | 0.1137 | No |
52 | CHAD | CHAD Entrez,  Source | chondroadherin | 11454 | -0.085 | 0.0605 | No |
53 | EFEMP1 | EFEMP1 Entrez,  Source | EGF-containing fibulin-like extracellular matrix protein 1 | 12182 | -0.111 | 0.0193 | No |
54 | LTBP4 | LTBP4 Entrez,  Source | latent transforming growth factor beta binding protein 4 | 12650 | -0.138 | 0.0011 | No |
55 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | 0.0013 | No |
56 | COL5A3 | COL5A3 Entrez,  Source | collagen, type V, alpha 3 | 13187 | -0.246 | 0.0117 | No |