Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_72h.class.cls
#double_gel_8d_versus_double_gel_72h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in classdouble_gel_8d
GeneSetSHEPARD_BMYB_MORPHOLINO_UP
Enrichment Score (ES)0.5051824
Normalized Enrichment Score (NES)1.7684722
Nominal p-value0.0
FDR q-value0.03703035
FWER p-Value0.996
Table: GSEA Results Summary



Fig 1: Enrichment plot: SHEPARD_BMYB_MORPHOLINO_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TIMP2TIMP2
Entrez,  Source
TIMP metallopeptidase inhibitor 2350.6420.0671Yes
2PCK1PCK1
Entrez,  Source
phosphoenolpyruvate carboxykinase 1 (soluble)590.5570.1258Yes
3BMP2BMP2
Entrez,  Source
bone morphogenetic protein 2910.4510.1725Yes
4FSTFST
Entrez,  Source
follistatin1320.3880.2116Yes
5FOSFOS
Entrez,  Source
v-fos FBJ murine osteosarcoma viral oncogene homolog1420.3710.2511Yes
6BGNBGN
Entrez,  Source
biglycan1430.3690.2912Yes
7FBXO32FBXO32
Entrez,  Source
F-box protein 322060.3180.3211Yes
8HSD3B1HSD3B1
Entrez,  Source
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 12290.2990.3519Yes
9DNAJB4DNAJB4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 42780.2630.3768Yes
10HNRPDHNRPD
Entrez,  Source
heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)3890.2130.3916Yes
11IGF2IGF2
Entrez,  Source
insulin-like growth factor 2 (somatomedin A)4800.1860.4050Yes
12RAB3CRAB3C
Entrez,  Source
RAB3C, member RAS oncogene family5490.1720.4186Yes
13SCARB1SCARB1
Entrez,  Source
scavenger receptor class B, member 15620.1710.4362Yes
14FABP1FABP1
Entrez,  Source
fatty acid binding protein 1, liver6160.1630.4499Yes
15HSBP1HSBP1
Entrez,  Source
heat shock factor binding protein 18770.1310.4446Yes
16HSPB1HSPB1
Entrez,  Source
heat shock 27kDa protein 110840.1160.4416Yes
17RASL11BRASL11B
Entrez,  Source
RAS-like, family 11, member B12320.1080.4422Yes
18ABCC5ABCC5
Entrez,  Source
ATP-binding cassette, sub-family C (CFTR/MRP), member 512630.1060.4515Yes
19ARG1ARG1
Entrez,  Source
arginase, liver13160.1030.4588Yes
20DLGAP4DLGAP4
Entrez,  Source
discs, large (Drosophila) homolog-associated protein 413170.1030.4700Yes
21CAMK1GCAMK1G
Entrez,  Source
calcium/calmodulin-dependent protein kinase IG13300.1020.4802Yes
22HFEHFE
Entrez,  Source
hemochromatosis14000.0990.4857Yes
23LAMP2LAMP2
Entrez,  Source
lysosomal-associated membrane protein 214670.0950.4911Yes
24EFHD2EFHD2
Entrez,  Source
EF-hand domain family, member D217510.0830.4787Yes
25SLC16A6SLC16A6
Entrez,  Source
solute carrier family 16, member 6 (monocarboxylic acid transporter 7)17750.0810.4858Yes
26GNAI3GNAI3
Entrez,  Source
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 317900.0810.4935Yes
27ANXA2ANXA2
Entrez,  Source
annexin A218250.0790.4995Yes
28BNIP3LBNIP3L
Entrez,  Source
BCL2/adenovirus E1B 19kDa interacting protein 3-like18630.0780.5052Yes
29RDH10RDH10
Entrez,  Source
retinol dehydrogenase 10 (all-trans)24070.0620.4709No
30WNT11WNT11
Entrez,  Source
wingless-type MMTV integration site family, member 1124540.0610.4740No
31GPC4GPC4
Entrez,  Source
glypican 425530.0580.4730No
32CRABP2CRABP2
Entrez,  Source
cellular retinoic acid binding protein 225660.0580.4784No
33GMPRGMPR
Entrez,  Source
guanosine monophosphate reductase26110.0570.4813No
34CASP8CASP8
Entrez,  Source
caspase 8, apoptosis-related cysteine peptidase26970.0550.4809No
35GLUD1GLUD1
Entrez,  Source
glutamate dehydrogenase 128430.0520.4756No
36PAPOLBPAPOLB
Entrez,  Source
poly(A) polymerase beta (testis specific)32570.0440.4491No
37SQSTM1SQSTM1
Entrez,  Source
sequestosome 132700.0430.4529No
38ATP6V1C2ATP6V1C2
Entrez,  Source
ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C233160.0420.4541No
39EIF4EEIF4E
Entrez,  Source
eukaryotic translation initiation factor 4E35380.0380.4415No
40SH3GLB2SH3GLB2
Entrez,  Source
SH3-domain GRB2-like endophilin B236210.0370.4393No
41PTP4A2PTP4A2
Entrez,  Source
protein tyrosine phosphatase type IVA, member 239710.0310.4163No
42MMP2MMP2
Entrez,  Source
matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)39780.0310.4192No
43GNSGNS
Entrez,  Source
glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID)42980.0250.3979No
44ATP1A1ATP1A1
Entrez,  Source
ATPase, Na+/K+ transporting, alpha 1 polypeptide46400.0200.3743No
45AK3AK3
Entrez,  Source
adenylate kinase 348200.0180.3628No
46CYP26B1CYP26B1
Entrez,  Source
cytochrome P450, family 26, subfamily B, polypeptide 148790.0170.3602No
47B2MB2M
Entrez,  Source
beta-2-microglobulin49920.0150.3534No
48SOCS3SOCS3
Entrez,  Source
suppressor of cytokine signaling 352600.0120.3346No
49VDAC3VDAC3
Entrez,  Source
voltage-dependent anion channel 353110.0110.3320No
50SYBL1SYBL1
Entrez,  Source
synaptobrevin-like 154850.0090.3199No
51FNTBFNTB
Entrez,  Source
farnesyltransferase, CAAX box, beta55900.0070.3128No
52IFI30IFI30
Entrez,  Source
interferon, gamma-inducible protein 306191-0.0000.2676No
53TMPOTMPO
Entrez,  Source
thymopoietin6281-0.0020.2610No
54DNAJA2DNAJA2
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 26450-0.0040.2488No
55HMGA1HMGA1
Entrez,  Source
high mobility group AT-hook 16574-0.0050.2401No
56HPGDHPGD
Entrez,  Source
hydroxyprostaglandin dehydrogenase 15-(NAD)6866-0.0090.2191No
57PRDX1PRDX1
Entrez,  Source
peroxiredoxin 16870-0.0090.2198No
58ITM2BITM2B
Entrez,  Source
integral membrane protein 2B7038-0.0110.2084No
59PNPOPNPO
Entrez,  Source
pyridoxamine 5'-phosphate oxidase7051-0.0110.2088No
60NAPE-PLDNAPE-PLD
Entrez,  Source
-7278-0.0140.1932No
61CYP11A1CYP11A1
Entrez,  Source
cytochrome P450, family 11, subfamily A, polypeptide 17492-0.0170.1789No
62CUBNCUBN
Entrez,  Source
cubilin (intrinsic factor-cobalamin receptor)7631-0.0190.1705No
63PSMD3PSMD3
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 37666-0.0190.1700No
64PDCPDC
Entrez,  Source
phosducin8071-0.0250.1422No
65CCNG1CCNG1
Entrez,  Source
cyclin G18130-0.0260.1406No
66BAXBAX
Entrez,  Source
BCL2-associated X protein8544-0.0310.1129No
67QKIQKI
Entrez,  Source
quaking homolog, KH domain RNA binding (mouse)8721-0.0340.1032No
68GCSHGCSH
Entrez,  Source
glycine cleavage system protein H (aminomethyl carrier)8961-0.0370.0892No
69HSPA2HSPA2
Entrez,  Source
heat shock 70kDa protein 29062-0.0380.0859No
70TPD52L2TPD52L2
Entrez,  Source
tumor protein D52-like 29479-0.0450.0593No
71MRPL19MRPL19
Entrez,  Source
mitochondrial ribosomal protein L1910051-0.0540.0221No
72STIP1STIP1
Entrez,  Source
stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)10313-0.0590.0088No
73MRPS18BMRPS18B
Entrez,  Source
mitochondrial ribosomal protein S18B10423-0.0610.0072No
74OSGEPL1OSGEPL1
Entrez,  Source
O-sialoglycoprotein endopeptidase-like 110611-0.0650.0001No
75HNF4AHNF4A
Entrez,  Source
hepatocyte nuclear factor 4, alpha10940-0.072-0.0169No
76SSBSSB
Entrez,  Source
Sjogren syndrome antigen B (autoantigen La)10994-0.073-0.0130No
77MINAMINA
Entrez,  Source
MYC induced nuclear antigen11107-0.076-0.0132No
78WHSC2WHSC2
Entrez,  Source
Wolf-Hirschhorn syndrome candidate 211144-0.077-0.0075No
79SNX27SNX27
Entrez,  Source
sorting nexin family member 2711199-0.078-0.0031No
80NUDT9NUDT9
Entrez,  Source
nudix (nucleoside diphosphate linked moiety X)-type motif 911254-0.0800.0015No
81RPS27RPS27
Entrez,  Source
ribosomal protein S27 (metallopanstimulin 1)11258-0.0800.0100No
82PTPRNPTPRN
Entrez,  Source
protein tyrosine phosphatase, receptor type, N11537-0.088-0.0015No
83SND1SND1
Entrez,  Source
-11565-0.0880.0061No
84PLAAPLAA
Entrez,  Source
phospholipase A2-activating protein11631-0.0900.0109No
85MBPMBP
Entrez,  Source
myelin basic protein11862-0.0980.0042No
86UPB1UPB1
Entrez,  Source
ureidopropionase, beta12035-0.1040.0025No
87DNAJA3DNAJA3
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 312143-0.1090.0063No
88PSME1PSME1
Entrez,  Source
proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)12165-0.1100.0166No
89SLC31A1SLC31A1
Entrez,  Source
solute carrier family 31 (copper transporters), member 112252-0.1140.0225No
90KNS2KNS2
Entrez,  Source
kinesin 212449-0.1230.0211No
91ABATABAT
Entrez,  Source
4-aminobutyrate aminotransferase12552-0.1320.0277No
92TP53TP53
Entrez,  Source
tumor protein p53 (Li-Fraumeni syndrome)12718-0.1430.0308No
93CPN1CPN1
Entrez,  Source
carboxypeptidase N, polypeptide 1, 50kD12773-0.1490.0429No
Table: GSEA details [plain text format]



Fig 2: SHEPARD_BMYB_MORPHOLINO_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: SHEPARD_BMYB_MORPHOLINO_UP: Random ES distribution   
Gene set null distribution of ES for SHEPARD_BMYB_MORPHOLINO_UP