Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_72h.class.cls
#double_gel_8d_versus_double_gel_72h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in classdouble_gel_8d
GeneSetSMOOTH_MUSCLE_CONTRACTION
Enrichment Score (ES)0.5952329
Normalized Enrichment Score (NES)2.208427
Nominal p-value0.0
FDR q-value2.6800236E-4
FWER p-Value0.0020
Table: GSEA Results Summary



Fig 1: Enrichment plot: SMOOTH_MUSCLE_CONTRACTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ADMADM
Entrez,  Source
adrenomedullin340.6490.0540Yes
2RAMP1RAMP1
Entrez,  Source
receptor (calcitonin) activity modifying protein 1370.6350.1093Yes
3RGS2RGS2
Entrez,  Source
regulator of G-protein signalling 2, 24kDa420.6160.1627Yes
4PRKAR2BPRKAR2B
Entrez,  Source
protein kinase, cAMP-dependent, regulatory, type II, beta690.4940.2038Yes
5RGS16RGS16
Entrez,  Source
regulator of G-protein signalling 161260.3910.2338Yes
6RGS1RGS1
Entrez,  Source
regulator of G-protein signalling 11400.3720.2653Yes
7FOSFOS
Entrez,  Source
v-fos FBJ murine osteosarcoma viral oncogene homolog1420.3710.2975Yes
8GJA1GJA1
Entrez,  Source
gap junction protein, alpha 1, 43kDa (connexin 43)1960.3240.3218Yes
9ATF3ATF3
Entrez,  Source
activating transcription factor 32180.3090.3472Yes
10RGS4RGS4
Entrez,  Source
regulator of G-protein signalling 42190.3080.3741Yes
11PKIBPKIB
Entrez,  Source
protein kinase (cAMP-dependent, catalytic) inhibitor beta2370.2920.3982Yes
12RGS5RGS5
Entrez,  Source
regulator of G-protein signalling 53060.2470.4146Yes
13RAMP3RAMP3
Entrez,  Source
receptor (calcitonin) activity modifying protein 33290.2370.4336Yes
14GRK5GRK5
Entrez,  Source
G protein-coupled receptor kinase 54010.2090.4465Yes
15JUNJUN
Entrez,  Source
jun oncogene4580.1940.4592Yes
16PRKAR1BPRKAR1B
Entrez,  Source
protein kinase, cAMP-dependent, regulatory, type I, beta5120.1810.4709Yes
17IGFBP1IGFBP1
Entrez,  Source
insulin-like growth factor binding protein 15310.1770.4850Yes
18CRHCRH
Entrez,  Source
corticotropin releasing hormone5410.1730.4995Yes
19IGFBP3IGFBP3
Entrez,  Source
insulin-like growth factor binding protein 35670.1700.5124Yes
20CREB3CREB3
Entrez,  Source
cAMP responsive element binding protein 37310.1460.5129Yes
21RGS3RGS3
Entrez,  Source
regulator of G-protein signalling 37620.1440.5231Yes
22NOS3NOS3
Entrez,  Source
nitric oxide synthase 3 (endothelial cell)8670.1320.5268Yes
23RGS10RGS10
Entrez,  Source
regulator of G-protein signalling 1010090.1210.5267Yes
24IL1BIL1B
Entrez,  Source
interleukin 1, beta10140.1210.5369Yes
25RGS7RGS7
Entrez,  Source
regulator of G-protein signalling 710780.1160.5423Yes
26PLCG2PLCG2
Entrez,  Source
phospholipase C, gamma 2 (phosphatidylinositol-specific)11160.1140.5494Yes
27YWHAQYWHAQ
Entrez,  Source
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide11400.1130.5575Yes
28ITPR1ITPR1
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 112350.1080.5598Yes
29GNAQGNAQ
Entrez,  Source
guanine nucleotide binding protein (G protein), q polypeptide13230.1030.5622Yes
30ADMRADMR
Entrez,  Source
adrenomedullin receptor13900.0990.5659Yes
31ACTA2ACTA2
Entrez,  Source
actin, alpha 2, smooth muscle, aorta14390.0960.5707Yes
32EDG2EDG2
Entrez,  Source
endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 214680.0950.5769Yes
33PKIGPKIG
Entrez,  Source
protein kinase (cAMP-dependent, catalytic) inhibitor gamma15330.0920.5801Yes
34GNG3GNG3
Entrez,  Source
guanine nucleotide binding protein (G protein), gamma 316040.0890.5826Yes
35GNB4GNB4
Entrez,  Source
guanine nucleotide binding protein (G protein), beta polypeptide 416240.0880.5888Yes
36RAMP2RAMP2
Entrez,  Source
receptor (calcitonin) activity modifying protein 216410.0870.5952Yes
37ATP2A3ATP2A3
Entrez,  Source
ATPase, Ca++ transporting, ubiquitous18000.0800.5903No
38PLCD1PLCD1
Entrez,  Source
phospholipase C, delta 118990.0770.5896No
39PRKCQPRKCQ
Entrez,  Source
protein kinase C, theta20870.0700.5815No
40RYR2RYR2
Entrez,  Source
ryanodine receptor 2 (cardiac)24870.0600.5566No
41CALM3CALM3
Entrez,  Source
calmodulin 3 (phosphorylase kinase, delta)26190.0570.5517No
42GNG5GNG5
Entrez,  Source
guanine nucleotide binding protein (G protein), gamma 526800.0560.5520No
43PKIAPKIA
Entrez,  Source
protein kinase (cAMP-dependent, catalytic) inhibitor alpha27270.0540.5533No
44CRHR1CRHR1
Entrez,  Source
corticotropin releasing hormone receptor 128440.0520.5490No
45PRKCAPRKCA
Entrez,  Source
protein kinase C, alpha28950.0510.5497No
46PRKAR1APRKAR1A
Entrez,  Source
protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)29020.0510.5536No
47OXTOXT
Entrez,  Source
oxytocin, prepro- (neurophysin I)30310.0480.5481No
48GUCY1A3GUCY1A3
Entrez,  Source
guanylate cyclase 1, soluble, alpha 331070.0460.5465No
49GNB3GNB3
Entrez,  Source
guanine nucleotide binding protein (G protein), beta polypeptide 333600.0410.5310No
50PRKCDPRKCD
Entrez,  Source
protein kinase C, delta33960.0410.5319No
51GUCA2BGUCA2B
Entrez,  Source
guanylate cyclase activator 2B (uroguanylin)34840.0390.5287No
52YWHABYWHAB
Entrez,  Source
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide36790.0360.5172No
53GNB5GNB5
Entrez,  Source
guanine nucleotide binding protein (G protein), beta 540180.0300.4942No
54RCP9RCP9
Entrez,  Source
-41020.0290.4905No
55GNB2GNB2
Entrez,  Source
guanine nucleotide binding protein (G protein), beta polypeptide 242680.0260.4802No
56ITPR3ITPR3
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 343440.0250.4767No
57CAMK2DCAMK2D
Entrez,  Source
calcium/calmodulin-dependent protein kinase (CaM kinase) II delta45240.0220.4651No
58GNG7GNG7
Entrez,  Source
guanine nucleotide binding protein (G protein), gamma 745250.0220.4671No
59CACNB3CACNB3
Entrez,  Source
calcium channel, voltage-dependent, beta 3 subunit46130.0210.4623No
60ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)46620.0200.4604No
61CALM2CALM2
Entrez,  Source
calmodulin 2 (phosphorylase kinase, delta)46990.0200.4594No
62MYLK2MYLK2
Entrez,  Source
myosin light chain kinase 2, skeletal muscle47190.0190.4597No
63ADCY2ADCY2
Entrez,  Source
adenylate cyclase 2 (brain)49220.0160.4458No
64IL6IL6
Entrez,  Source
interleukin 6 (interferon, beta 2)49530.0160.4449No
65RYR1RYR1
Entrez,  Source
ryanodine receptor 1 (skeletal)50340.0150.4402No
66CAMK2GCAMK2G
Entrez,  Source
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma52010.0130.4287No
67GRK4GRK4
Entrez,  Source
G protein-coupled receptor kinase 454010.0100.4145No
68OXTROXTR
Entrez,  Source
oxytocin receptor54120.0100.4146No
69GBA2GBA2
Entrez,  Source
glucosidase, beta (bile acid) 254570.0090.4120No
70ACTA1ACTA1
Entrez,  Source
actin, alpha 1, skeletal muscle54640.0090.4123No
71PRKCEPRKCE
Entrez,  Source
protein kinase C, epsilon57960.0050.3877No
72YWHAHYWHAH
Entrez,  Source
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide58090.0040.3872No
73PLCB3PLCB3
Entrez,  Source
phospholipase C, beta 3 (phosphatidylinositol-specific)59000.0030.3807No
74RGS9RGS9
Entrez,  Source
regulator of G-protein signalling 960170.0020.3721No
75ADCY6ADCY6
Entrez,  Source
adenylate cyclase 660280.0020.3715No
76CAMK2ACAMK2A
Entrez,  Source
calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha6240-0.0010.3556No
77SP1SP1
Entrez,  Source
Sp1 transcription factor6295-0.0020.3517No
78IGFBP6IGFBP6
Entrez,  Source
insulin-like growth factor binding protein 66428-0.0040.3420No
79CALCACALCA
Entrez,  Source
calcitonin/calcitonin-related polypeptide, alpha6521-0.0050.3355No
80CREBL1CREBL1
Entrez,  Source
cAMP responsive element binding protein-like 16581-0.0060.3315No
81ITPR2ITPR2
Entrez,  Source
inositol 1,4,5-triphosphate receptor, type 26591-0.0060.3313No
82ADCY5ADCY5
Entrez,  Source
adenylate cyclase 56683-0.0070.3250No
83CAMK2BCAMK2B
Entrez,  Source
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta6851-0.0090.3132No
84RGS14RGS14
Entrez,  Source
regulator of G-protein signalling 146865-0.0090.3130No
85GRK6GRK6
Entrez,  Source
G protein-coupled receptor kinase 67131-0.0120.2940No
86NOS1NOS1
Entrez,  Source
nitric oxide synthase 1 (neuronal)7163-0.0130.2927No
87ARRB2ARRB2
Entrez,  Source
arrestin, beta 27277-0.0140.2854No
88RGS6RGS6
Entrez,  Source
regulator of G-protein signalling 67652-0.0190.2588No
89CALM1CALM1
Entrez,  Source
calmodulin 1 (phosphorylase kinase, delta)7735-0.0200.2543No
90GNB1GNB1
Entrez,  Source
guanine nucleotide binding protein (G protein), beta polypeptide 17870-0.0220.2460No
91ARRB1ARRB1
Entrez,  Source
arrestin, beta 18078-0.0250.2325No
92ADCY8ADCY8
Entrez,  Source
adenylate cyclase 8 (brain)8194-0.0260.2262No
93CORINCORIN
Entrez,  Source
corin, serine peptidase8486-0.0310.2068No
94SLC8A1SLC8A1
Entrez,  Source
solute carrier family 8 (sodium/calcium exchanger), member 18530-0.0310.2063No
95ADCY3ADCY3
Entrez,  Source
adenylate cyclase 38531-0.0310.2090No
96PRKCHPRKCH
Entrez,  Source
protein kinase C, eta8644-0.0330.2034No
97PLCG1PLCG1
Entrez,  Source
phospholipase C, gamma 18898-0.0360.1874No
98ATF1ATF1
Entrez,  Source
activating transcription factor 19168-0.0400.1706No
99CNN1CNN1
Entrez,  Source
calponin 1, basic, smooth muscle9196-0.0400.1720No
100NFKB1NFKB1
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)9252-0.0410.1714No
101PDE4BPDE4B
Entrez,  Source
phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)9537-0.0460.1540No
102RLN1RLN1
Entrez,  Source
relaxin 19596-0.0470.1537No
103GNG12GNG12
Entrez,  Source
guanine nucleotide binding protein (G protein), gamma 129617-0.0470.1563No
104PRKACAPRKACA
Entrez,  Source
protein kinase, cAMP-dependent, catalytic, alpha9662-0.0480.1572No
105ATP2A2ATP2A2
Entrez,  Source
ATPase, Ca++ transporting, cardiac muscle, slow twitch 29899-0.0520.1438No
106PDE4DPDE4D
Entrez,  Source
phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)10269-0.0580.1210No
107PRKCZPRKCZ
Entrez,  Source
protein kinase C, zeta10325-0.0590.1220No
108PRKD1PRKD1
Entrez,  Source
protein kinase D110693-0.0660.1000No
109GUCA2AGUCA2A
Entrez,  Source
guanylate cyclase activator 2A (guanylin)10897-0.0710.0908No
110RGS19RGS19
Entrez,  Source
regulator of G-protein signalling 1910966-0.0730.0920No
111PRKAR2APRKAR2A
Entrez,  Source
protein kinase, cAMP-dependent, regulatory, type II, alpha10971-0.0730.0980No
112PRKCB1PRKCB1
Entrez,  Source
protein kinase C, beta 110982-0.0730.1036No
113ATF5ATF5
Entrez,  Source
activating transcription factor 511103-0.0760.1012No
114IGFBP2IGFBP2
Entrez,  Source
insulin-like growth factor binding protein 2, 36kDa11121-0.0760.1065No
115MYL2MYL2
Entrez,  Source
myosin, light chain 2, regulatory, cardiac, slow11531-0.0870.0832No
116ADCY4ADCY4
Entrez,  Source
adenylate cyclase 412124-0.1080.0479No
117ATF2ATF2
Entrez,  Source
activating transcription factor 212173-0.1100.0539No
118GSTO1GSTO1
Entrez,  Source
glutathione S-transferase omega 112328-0.1170.0525No
119DGKZDGKZ
Entrez,  Source
diacylglycerol kinase, zeta 104kDa12638-0.1370.0411No
120IGFBP4IGFBP4
Entrez,  Source
insulin-like growth factor binding protein 412663-0.1380.0514No
Table: GSEA details [plain text format]



Fig 2: SMOOTH_MUSCLE_CONTRACTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: SMOOTH_MUSCLE_CONTRACTION: Random ES distribution   
Gene set null distribution of ES for SMOOTH_MUSCLE_CONTRACTION