Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TCATCTC,MIR-143 |
| Enrichment Score (ES) | 0.50573015 |
| Normalized Enrichment Score (NES) | 1.7392247 |
| Nominal p-value | 0.0034602077 |
| FDR q-value | 0.04414204 |
| FWER p-Value | 0.999 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL5A2 | COL5A2 Entrez, Source | collagen, type V, alpha 2 | 28 | 0.668 | 0.1043 | Yes |
| 2 | TMEM27 | TMEM27 Entrez, Source | transmembrane protein 27 | 36 | 0.635 | 0.2049 | Yes |
| 3 | MAF | MAF Entrez, Source | v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) | 73 | 0.484 | 0.2794 | Yes |
| 4 | SEPT4 | SEPT4 Entrez, Source | septin 4 | 245 | 0.287 | 0.3121 | Yes |
| 5 | TSC22D3 | TSC22D3 Entrez, Source | TSC22 domain family, member 3 | 276 | 0.263 | 0.3518 | Yes |
| 6 | SLC38A2 | SLC38A2 Entrez, Source | solute carrier family 38, member 2 | 302 | 0.248 | 0.3895 | Yes |
| 7 | AKAP13 | AKAP13 Entrez, Source | A kinase (PRKA) anchor protein 13 | 336 | 0.235 | 0.4243 | Yes |
| 8 | MLLT3 | MLLT3 Entrez, Source | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 | 808 | 0.139 | 0.4110 | Yes |
| 9 | MAP1B | MAP1B Entrez, Source | microtubule-associated protein 1B | 816 | 0.138 | 0.4323 | Yes |
| 10 | LMO4 | LMO4 Entrez, Source | LIM domain only 4 | 827 | 0.136 | 0.4533 | Yes |
| 11 | PC | PC Entrez, Source | pyruvate carboxylase | 895 | 0.130 | 0.4689 | Yes |
| 12 | RAB7 | RAB7 Entrez, Source | RAB7, member RAS oncogene family | 926 | 0.127 | 0.4869 | Yes |
| 13 | ROD1 | ROD1 Entrez, Source | ROD1 regulator of differentiation 1 (S. pombe) | 942 | 0.126 | 0.5057 | Yes |
| 14 | ITPR1 | ITPR1 Entrez, Source | inositol 1,4,5-triphosphate receptor, type 1 | 1235 | 0.108 | 0.5009 | No |
| 15 | TAOK2 | TAOK2 Entrez, Source | TAO kinase 2 | 1868 | 0.078 | 0.4656 | No |
| 16 | CRELD1 | CRELD1 Entrez, Source | cysteine-rich with EGF-like domains 1 | 1902 | 0.077 | 0.4753 | No |
| 17 | BSN | BSN Entrez, Source | bassoon (presynaptic cytomatrix protein) | 2099 | 0.070 | 0.4716 | No |
| 18 | CNOT4 | CNOT4 Entrez, Source | CCR4-NOT transcription complex, subunit 4 | 2113 | 0.069 | 0.4817 | No |
| 19 | VAPB | VAPB Entrez, Source | VAMP (vesicle-associated membrane protein)-associated protein B and C | 2232 | 0.066 | 0.4834 | No |
| 20 | PRPF19 | PRPF19 Entrez, Source | PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) | 2625 | 0.057 | 0.4629 | No |
| 21 | IGFBP5 | IGFBP5 Entrez, Source | insulin-like growth factor binding protein 5 | 2713 | 0.055 | 0.4651 | No |
| 22 | DTNB | DTNB Entrez, Source | dystrobrevin, beta | 2905 | 0.051 | 0.4587 | No |
| 23 | GALNT7 | GALNT7 Entrez, Source | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) | 2975 | 0.049 | 0.4614 | No |
| 24 | MARCH3 | MARCH3 Entrez, Source | membrane-associated ring finger (C3HC4) 3 | 3070 | 0.047 | 0.4618 | No |
| 25 | ERBB3 | ERBB3 Entrez, Source | v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) | 3516 | 0.038 | 0.4344 | No |
| 26 | RALBP1 | RALBP1 Entrez, Source | ralA binding protein 1 | 3689 | 0.035 | 0.4270 | No |
| 27 | CBFB | CBFB Entrez, Source | core-binding factor, beta subunit | 3853 | 0.032 | 0.4199 | No |
| 28 | GFPT2 | GFPT2 Entrez, Source | glutamine-fructose-6-phosphate transaminase 2 | 3912 | 0.032 | 0.4206 | No |
| 29 | GLI3 | GLI3 Entrez, Source | GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) | 4066 | 0.029 | 0.4137 | No |
| 30 | ENSA | ENSA Entrez, Source | endosulfine alpha | 4072 | 0.029 | 0.4180 | No |
| 31 | PNCK | PNCK Entrez, Source | pregnancy upregulated non-ubiquitously expressed CaM kinase | 4133 | 0.028 | 0.4179 | No |
| 32 | GNS | GNS Entrez, Source | glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID) | 4298 | 0.025 | 0.4096 | No |
| 33 | CSNK1G3 | CSNK1G3 Entrez, Source | casein kinase 1, gamma 3 | 4483 | 0.023 | 0.3993 | No |
| 34 | AGPAT1 | AGPAT1 Entrez, Source | 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) | 4698 | 0.020 | 0.3863 | No |
| 35 | ESRRG | ESRRG Entrez, Source | estrogen-related receptor gamma | 5378 | 0.010 | 0.3367 | No |
| 36 | SMNDC1 | SMNDC1 Entrez, Source | survival motor neuron domain containing 1 | 5567 | 0.007 | 0.3237 | No |
| 37 | ATP10A | ATP10A Entrez, Source | ATPase, Class V, type 10A | 5612 | 0.007 | 0.3215 | No |
| 38 | KRAS | KRAS Entrez, Source | v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog | 5676 | 0.006 | 0.3177 | No |
| 39 | PRKCE | PRKCE Entrez, Source | protein kinase C, epsilon | 5796 | 0.005 | 0.3095 | No |
| 40 | BRD2 | BRD2 Entrez, Source | bromodomain containing 2 | 5876 | 0.004 | 0.3041 | No |
| 41 | SYT3 | SYT3 Entrez, Source | synaptotagmin III | 6132 | 0.000 | 0.2849 | No |
| 42 | MAPK7 | MAPK7 Entrez, Source | mitogen-activated protein kinase 7 | 6376 | -0.003 | 0.2670 | No |
| 43 | LASP1 | LASP1 Entrez, Source | LIM and SH3 protein 1 | 6500 | -0.004 | 0.2585 | No |
| 44 | PTPN4 | PTPN4 Entrez, Source | protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) | 6649 | -0.006 | 0.2483 | No |
| 45 | HOXA5 | HOXA5 Entrez, Source | homeobox A5 | 6663 | -0.007 | 0.2484 | No |
| 46 | ITGA6 | ITGA6 Entrez, Source | integrin, alpha 6 | 6967 | -0.010 | 0.2272 | No |
| 47 | TPM3 | TPM3 Entrez, Source | tropomyosin 3 | 6977 | -0.010 | 0.2282 | No |
| 48 | ITM2B | ITM2B Entrez, Source | integral membrane protein 2B | 7038 | -0.011 | 0.2254 | No |
| 49 | KCNH8 | KCNH8 Entrez, Source | potassium voltage-gated channel, subfamily H (eag-related), member 8 | 7056 | -0.011 | 0.2260 | No |
| 50 | NTRK2 | NTRK2 Entrez, Source | neurotrophic tyrosine kinase, receptor, type 2 | 7314 | -0.014 | 0.2089 | No |
| 51 | ZDHHC9 | ZDHHC9 Entrez, Source | zinc finger, DHHC-type containing 9 | 7414 | -0.016 | 0.2039 | No |
| 52 | HTR2C | HTR2C Entrez, Source | 5-hydroxytryptamine (serotonin) receptor 2C | 7488 | -0.017 | 0.2010 | No |
| 53 | ASB6 | ASB6 Entrez, Source | ankyrin repeat and SOCS box-containing 6 | 7556 | -0.017 | 0.1987 | No |
| 54 | STRN3 | STRN3 Entrez, Source | striatin, calmodulin binding protein 3 | 7629 | -0.019 | 0.1963 | No |
| 55 | ST8SIA4 | ST8SIA4 Entrez, Source | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 | 7701 | -0.019 | 0.1940 | No |
| 56 | ADD3 | ADD3 Entrez, Source | adducin 3 (gamma) | 7901 | -0.022 | 0.1825 | No |
| 57 | NUP35 | NUP35 Entrez, Source | nucleoporin 35kDa | 8003 | -0.024 | 0.1786 | No |
| 58 | SCAMP1 | SCAMP1 Entrez, Source | secretory carrier membrane protein 1 | 8093 | -0.025 | 0.1759 | No |
| 59 | SCAMP4 | SCAMP4 Entrez, Source | secretory carrier membrane protein 4 | 8176 | -0.026 | 0.1739 | No |
| 60 | SEPT3 | SEPT3 Entrez, Source | septin 3 | 8462 | -0.030 | 0.1572 | No |
| 61 | AKAP6 | AKAP6 Entrez, Source | A kinase (PRKA) anchor protein 6 | 8526 | -0.031 | 0.1575 | No |
| 62 | UNC5A | UNC5A Entrez, Source | unc-5 homolog A (C. elegans) | 8662 | -0.033 | 0.1526 | No |
| 63 | SMARCD2 | SMARCD2 Entrez, Source | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 | 8700 | -0.034 | 0.1551 | No |
| 64 | QKI | QKI Entrez, Source | quaking homolog, KH domain RNA binding (mouse) | 8721 | -0.034 | 0.1590 | No |
| 65 | EGLN1 | EGLN1 Entrez, Source | egl nine homolog 1 (C. elegans) | 9099 | -0.039 | 0.1368 | No |
| 66 | OPRS1 | OPRS1 Entrez, Source | opioid receptor, sigma 1 | 9241 | -0.041 | 0.1326 | No |
| 67 | DNMT3A | DNMT3A Entrez, Source | DNA (cytosine-5-)-methyltransferase 3 alpha | 9385 | -0.043 | 0.1287 | No |
| 68 | TARDBP | TARDBP Entrez, Source | TAR DNA binding protein | 9687 | -0.048 | 0.1138 | No |
| 69 | RBM16 | RBM16 Entrez, Source | RNA binding motif protein 16 | 9688 | -0.048 | 0.1215 | No |
| 70 | ABCB9 | ABCB9 Entrez, Source | ATP-binding cassette, sub-family B (MDR/TAP), member 9 | 10158 | -0.056 | 0.0951 | No |
| 71 | FGF1 | FGF1 Entrez, Source | fibroblast growth factor 1 (acidic) | 10275 | -0.058 | 0.0956 | No |
| 72 | HMBS | HMBS Entrez, Source | hydroxymethylbilane synthase | 10763 | -0.067 | 0.0696 | No |
| 73 | BRCA1 | BRCA1 Entrez, Source | breast cancer 1, early onset | 11628 | -0.090 | 0.0188 | No |
| 74 | GCS1 | GCS1 Entrez, Source | - | 11734 | -0.093 | 0.0257 | No |
| 75 | PSME4 | PSME4 Entrez, Source | proteasome (prosome, macropain) activator subunit 4 | 12096 | -0.107 | 0.0155 | No |
| 76 | NUAK2 | NUAK2 Entrez, Source | NUAK family, SNF1-like kinase, 2 | 13065 | -0.201 | -0.0255 | No |
| 77 | OTUD4 | OTUD4 Entrez, Source | OTU domain containing 4 | 13243 | -0.291 | 0.0075 | No |
