Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | TGFBETA_C2_UP |
| Enrichment Score (ES) | 0.72133315 |
| Normalized Enrichment Score (NES) | 1.8203781 |
| Nominal p-value | 0.0038834952 |
| FDR q-value | 0.02952574 |
| FWER p-Value | 0.944 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 3 | 1.046 | 0.3497 | Yes |
| 2 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 15 | 0.737 | 0.5956 | Yes |
| 3 | MARCKSL1 | MARCKSL1 Entrez, Source | MARCKS-like 1 | 122 | 0.399 | 0.7213 | Yes |
| 4 | MMP14 | MMP14 Entrez, Source | matrix metallopeptidase 14 (membrane-inserted) | 1312 | 0.104 | 0.6668 | No |
| 5 | CDH6 | CDH6 Entrez, Source | cadherin 6, type 2, K-cadherin (fetal kidney) | 1405 | 0.098 | 0.6926 | No |
| 6 | FN1 | FN1 Entrez, Source | fibronectin 1 | 2637 | 0.057 | 0.6192 | No |
| 7 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 2819 | 0.052 | 0.6231 | No |
| 8 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 3256 | 0.044 | 0.6050 | No |
| 9 | MMP3 | MMP3 Entrez, Source | matrix metallopeptidase 3 (stromelysin 1, progelatinase) | 3764 | 0.034 | 0.5784 | No |
| 10 | WNT2B | WNT2B Entrez, Source | wingless-type MMTV integration site family, member 2B | 3814 | 0.033 | 0.5858 | No |
| 11 | ITGB2 | ITGB2 Entrez, Source | integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 6196 | -0.001 | 0.4073 | No |
| 12 | ARHGDIA | ARHGDIA Entrez, Source | Rho GDP dissociation inhibitor (GDI) alpha | 9058 | -0.038 | 0.2055 | No |
| 13 | DVL1 | DVL1 Entrez, Source | dishevelled, dsh homolog 1 (Drosophila) | 9309 | -0.042 | 0.2007 | No |
| 14 | JUP | JUP Entrez, Source | junction plakoglobin | 10241 | -0.057 | 0.1500 | No |
| 15 | LRP1 | LRP1 Entrez, Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 10559 | -0.063 | 0.1475 | No |
| 16 | ICAM1 | ICAM1 Entrez, Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 12996 | -0.183 | 0.0260 | No |
