Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | V$CREBP1_Q2 |
Enrichment Score (ES) | 0.4869113 |
Normalized Enrichment Score (NES) | 1.7858787 |
Nominal p-value | 0.0 |
FDR q-value | 0.033626013 |
FWER p-Value | 0.984 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | CLDN7 | CLDN7 Entrez,  Source | claudin 7 | 7 | 0.940 | 0.0980 | Yes |
2 | CCND2 | CCND2 Entrez,  Source | cyclin D2 | 11 | 0.815 | 0.1833 | Yes |
3 | MAF | MAF Entrez,  Source | v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) | 73 | 0.484 | 0.2295 | Yes |
4 | HS3ST2 | HS3ST2 Entrez,  Source | heparan sulfate (glucosamine) 3-O-sulfotransferase 2 | 129 | 0.391 | 0.2663 | Yes |
5 | EGR2 | EGR2 Entrez,  Source | early growth response 2 (Krox-20 homolog, Drosophila) | 130 | 0.390 | 0.3072 | Yes |
6 | FOS | FOS Entrez,  Source | v-fos FBJ murine osteosarcoma viral oncogene homolog | 142 | 0.371 | 0.3453 | Yes |
7 | SLC38A2 | SLC38A2 Entrez,  Source | solute carrier family 38, member 2 | 302 | 0.248 | 0.3593 | Yes |
8 | LTBP1 | LTBP1 Entrez,  Source | latent transforming growth factor beta binding protein 1 | 372 | 0.219 | 0.3771 | Yes |
9 | NCALD | NCALD Entrez,  Source | neurocalcin delta | 441 | 0.198 | 0.3927 | Yes |
10 | BAT5 | BAT5 Entrez,  Source | HLA-B associated transcript 5 | 494 | 0.183 | 0.4079 | Yes |
11 | CRH | CRH Entrez,  Source | corticotropin releasing hormone | 541 | 0.173 | 0.4226 | Yes |
12 | USP2 | USP2 Entrez,  Source | ubiquitin specific peptidase 2 | 694 | 0.151 | 0.4269 | Yes |
13 | FLT1 | FLT1 Entrez,  Source | fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) | 699 | 0.150 | 0.4424 | Yes |
14 | LMO4 | LMO4 Entrez,  Source | LIM domain only 4 | 827 | 0.136 | 0.4471 | Yes |
15 | PITX2 | PITX2 Entrez,  Source | paired-like homeodomain transcription factor 2 | 850 | 0.134 | 0.4595 | Yes |
16 | TRIB1 | TRIB1 Entrez,  Source | tribbles homolog 1 (Drosophila) | 1067 | 0.116 | 0.4554 | Yes |
17 | PPARGC1A | PPARGC1A Entrez,  Source | peroxisome proliferative activated receptor, gamma, coactivator 1, alpha | 1068 | 0.116 | 0.4676 | Yes |
18 | DSCR1 | DSCR1 Entrez,  Source | Down syndrome critical region gene 1 | 1098 | 0.115 | 0.4774 | Yes |
19 | DUSP1 | DUSP1 Entrez,  Source | dual specificity phosphatase 1 | 1297 | 0.104 | 0.4734 | Yes |
20 | PER1 | PER1 Entrez,  Source | period homolog 1 (Drosophila) | 1347 | 0.101 | 0.4803 | Yes |
21 | ING3 | ING3 Entrez,  Source | inhibitor of growth family, member 3 | 1398 | 0.099 | 0.4869 | Yes |
22 | STAT3 | STAT3 Entrez,  Source | signal transducer and activator of transcription 3 (acute-phase response factor) | 1729 | 0.083 | 0.4707 | No |
23 | CEBPB | CEBPB Entrez,  Source | CCAAT/enhancer binding protein (C/EBP), beta | 1774 | 0.082 | 0.4759 | No |
24 | ICA1 | ICA1 Entrez,  Source | islet cell autoantigen 1, 69kDa | 1818 | 0.080 | 0.4810 | No |
25 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 2181 | 0.068 | 0.4608 | No |
26 | BCL11A | BCL11A Entrez,  Source | B-cell CLL/lymphoma 11A (zinc finger protein) | 2222 | 0.067 | 0.4647 | No |
27 | SLC25A25 | SLC25A25 Entrez,  Source | solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 | 2382 | 0.063 | 0.4593 | No |
28 | DIABLO | DIABLO Entrez,  Source | diablo homolog (Drosophila) | 2448 | 0.061 | 0.4607 | No |
29 | MCAM | MCAM Entrez,  Source | melanoma cell adhesion molecule | 2824 | 0.052 | 0.4379 | No |
30 | NR4A3 | NR4A3 Entrez,  Source | nuclear receptor subfamily 4, group A, member 3 | 2974 | 0.049 | 0.4318 | No |
31 | EGR1 | EGR1 Entrez,  Source | early growth response 1 | 3274 | 0.043 | 0.4137 | No |
32 | EGR4 | EGR4 Entrez,  Source | early growth response 4 | 3289 | 0.043 | 0.4171 | No |
33 | GNAS | GNAS Entrez,  Source | GNAS complex locus | 3379 | 0.041 | 0.4147 | No |
34 | SNF1LK | SNF1LK Entrez,  Source | SNF1-like kinase | 3570 | 0.037 | 0.4042 | No |
35 | MAP1LC3A | MAP1LC3A Entrez,  Source | microtubule-associated protein 1 light chain 3 alpha | 3662 | 0.036 | 0.4011 | No |
36 | ELOVL5 | ELOVL5 Entrez,  Source | ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) | 3787 | 0.034 | 0.3953 | No |
37 | MESDC1 | MESDC1 Entrez,  Source | mesoderm development candidate 1 | 4058 | 0.029 | 0.3779 | No |
38 | CALML3 | CALML3 Entrez,  Source | calmodulin-like 3 | 4093 | 0.029 | 0.3784 | No |
39 | EGR3 | EGR3 Entrez,  Source | early growth response 3 | 4101 | 0.029 | 0.3808 | No |
40 | TPM4 | TPM4 Entrez,  Source | tropomyosin 4 | 4281 | 0.026 | 0.3700 | No |
41 | BRAF | BRAF Entrez,  Source | v-raf murine sarcoma viral oncogene homolog B1 | 4295 | 0.026 | 0.3717 | No |
42 | NAP1L2 | NAP1L2 Entrez,  Source | nucleosome assembly protein 1-like 2 | 4354 | 0.025 | 0.3699 | No |
43 | UBAP1 | UBAP1 Entrez,  Source | ubiquitin associated protein 1 | 4366 | 0.024 | 0.3716 | No |
44 | UCN | UCN Entrez,  Source | urocortin | 4469 | 0.023 | 0.3663 | No |
45 | SLC18A2 | SLC18A2 Entrez,  Source | solute carrier family 18 (vesicular monoamine), member 2 | 4636 | 0.020 | 0.3559 | No |
46 | AGPAT1 | AGPAT1 Entrez,  Source | 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) | 4698 | 0.020 | 0.3533 | No |
47 | CALM2 | CALM2 Entrez,  Source | calmodulin 2 (phosphorylase kinase, delta) | 4699 | 0.020 | 0.3554 | No |
48 | CBX3 | CBX3 Entrez,  Source | chromobox homolog 3 (HP1 gamma homolog, Drosophila) | 4775 | 0.019 | 0.3516 | No |
49 | CHGB | CHGB Entrez,  Source | chromogranin B (secretogranin 1) | 4848 | 0.017 | 0.3480 | No |
50 | SLC6A5 | SLC6A5 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, glycine), member 5 | 4894 | 0.017 | 0.3464 | No |
51 | PNRC1 | PNRC1 Entrez,  Source | proline-rich nuclear receptor coactivator 1 | 4913 | 0.016 | 0.3468 | No |
52 | FOXD3 | FOXD3 Entrez,  Source | forkhead box D3 | 4916 | 0.016 | 0.3483 | No |
53 | PPP2R2A | PPP2R2A Entrez,  Source | protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform | 4968 | 0.016 | 0.3461 | No |
54 | TACR1 | TACR1 Entrez,  Source | tachykinin receptor 1 | 4994 | 0.015 | 0.3458 | No |
55 | CX36 | CX36 Entrez,  Source | - | 5108 | 0.014 | 0.3387 | No |
56 | ID1 | ID1 Entrez,  Source | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 5296 | 0.011 | 0.3258 | No |
57 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 5390 | 0.010 | 0.3198 | No |
58 | RBMS2 | RBMS2 Entrez,  Source | RNA binding motif, single stranded interacting protein 2 | 6058 | 0.001 | 0.2695 | No |
59 | AGPAT4 | AGPAT4 Entrez,  Source | 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) | 6101 | 0.001 | 0.2664 | No |
60 | CBX8 | CBX8 Entrez,  Source | chromobox homolog 8 (Pc class homolog, Drosophila) | 6109 | 0.001 | 0.2659 | No |
61 | ELL2 | ELL2 Entrez,  Source | elongation factor, RNA polymerase II, 2 | 6213 | -0.001 | 0.2582 | No |
62 | ATP6V0C | ATP6V0C Entrez,  Source | ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c | 6333 | -0.002 | 0.2494 | No |
63 | PDLIM3 | PDLIM3 Entrez,  Source | PDZ and LIM domain 3 | 6654 | -0.006 | 0.2259 | No |
64 | SMAD1 | SMAD1 Entrez,  Source | SMAD, mothers against DPP homolog 1 (Drosophila) | 6658 | -0.007 | 0.2264 | No |
65 | RAB6A | RAB6A Entrez,  Source | RAB6A, member RAS oncogene family | 6686 | -0.007 | 0.2251 | No |
66 | THRAP3 | THRAP3 Entrez,  Source | thyroid hormone receptor associated protein 3 | 6772 | -0.008 | 0.2195 | No |
67 | TH | TH Entrez,  Source | tyrosine hydroxylase | 6779 | -0.008 | 0.2198 | No |
68 | CREM | CREM Entrez,  Source | cAMP responsive element modulator | 6850 | -0.009 | 0.2155 | No |
69 | VGF | VGF Entrez,  Source | VGF nerve growth factor inducible | 6937 | -0.010 | 0.2100 | No |
70 | GNL1 | GNL1 Entrez,  Source | guanine nucleotide binding protein-like 1 | 6990 | -0.011 | 0.2072 | No |
71 | GRM3 | GRM3 Entrez,  Source | glutamate receptor, metabotropic 3 | 7053 | -0.011 | 0.2037 | No |
72 | AHI1 | AHI1 Entrez,  Source | Abelson helper integration site 1 | 7296 | -0.014 | 0.1869 | No |
73 | RCE1 | RCE1 Entrez,  Source | RCE1 homolog, prenyl protein peptidase (S. cerevisiae) | 7422 | -0.016 | 0.1791 | No |
74 | KCNK1 | KCNK1 Entrez,  Source | potassium channel, subfamily K, member 1 | 7542 | -0.017 | 0.1719 | No |
75 | PTPRU | PTPRU Entrez,  Source | protein tyrosine phosphatase, receptor type, U | 7795 | -0.021 | 0.1550 | No |
76 | FGF6 | FGF6 Entrez,  Source | fibroblast growth factor 6 | 7892 | -0.022 | 0.1500 | No |
77 | LCMT1 | LCMT1 Entrez,  Source | leucine carboxyl methyltransferase 1 | 8069 | -0.025 | 0.1393 | No |
78 | MBNL1 | MBNL1 Entrez,  Source | muscleblind-like (Drosophila) | 8090 | -0.025 | 0.1404 | No |
79 | THRA | THRA Entrez,  Source | thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) | 8105 | -0.025 | 0.1420 | No |
80 | NF1 | NF1 Entrez,  Source | neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) | 8226 | -0.027 | 0.1357 | No |
81 | NAPA | NAPA Entrez,  Source | N-ethylmaleimide-sensitive factor attachment protein, alpha | 8533 | -0.031 | 0.1158 | No |
82 | PPM1A | PPM1A Entrez,  Source | protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform | 8630 | -0.033 | 0.1120 | No |
83 | SCG2 | SCG2 Entrez,  Source | secretogranin II (chromogranin C) | 8730 | -0.034 | 0.1081 | No |
84 | PPM2C | PPM2C Entrez,  Source | protein phosphatase 2C, magnesium-dependent, catalytic subunit | 8778 | -0.035 | 0.1081 | No |
85 | RPL41 | RPL41 Entrez,  Source | ribosomal protein L41 | 8782 | -0.035 | 0.1115 | No |
86 | HHEX | HHEX Entrez,  Source | homeobox, hematopoietically expressed | 8800 | -0.035 | 0.1139 | No |
87 | SPHK2 | SPHK2 Entrez,  Source | sphingosine kinase 2 | 8931 | -0.037 | 0.1079 | No |
88 | DDX3X | DDX3X Entrez,  Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked | 9054 | -0.038 | 0.1027 | No |
89 | SNAP25 | SNAP25 Entrez,  Source | synaptosomal-associated protein, 25kDa | 9178 | -0.040 | 0.0976 | No |
90 | PPP1R10 | PPP1R10 Entrez,  Source | protein phosphatase 1, regulatory subunit 10 | 9190 | -0.040 | 0.1010 | No |
91 | DLST | DLST Entrez,  Source | dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) | 9219 | -0.040 | 0.1031 | No |
92 | KCNA5 | KCNA5 Entrez,  Source | potassium voltage-gated channel, shaker-related subfamily, member 5 | 9542 | -0.046 | 0.0836 | No |
93 | MSX2 | MSX2 Entrez,  Source | msh homeobox homolog 2 (Drosophila) | 9667 | -0.048 | 0.0793 | No |
94 | GAK | GAK Entrez,  Source | cyclin G associated kinase | 9845 | -0.051 | 0.0712 | No |
95 | HOXC10 | HOXC10 Entrez,  Source | homeobox C10 | 9987 | -0.053 | 0.0662 | No |
96 | EEF2 | EEF2 Entrez,  Source | eukaryotic translation elongation factor 2 | 9999 | -0.053 | 0.0709 | No |
97 | SENP2 | SENP2 Entrez,  Source | SUMO1/sentrin/SMT3 specific peptidase 2 | 10180 | -0.056 | 0.0632 | No |
98 | IKBKB | IKBKB Entrez,  Source | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta | 10261 | -0.058 | 0.0633 | No |
99 | PDE4D | PDE4D Entrez,  Source | phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) | 10269 | -0.058 | 0.0688 | No |
100 | TRAP1 | TRAP1 Entrez,  Source | TNF receptor-associated protein 1 | 10316 | -0.059 | 0.0715 | No |
101 | YME1L1 | YME1L1 Entrez,  Source | YME1-like 1 (S. cerevisiae) | 10403 | -0.060 | 0.0713 | No |
102 | MRPS18B | MRPS18B Entrez,  Source | mitochondrial ribosomal protein S18B | 10423 | -0.061 | 0.0762 | No |
103 | PCSK1 | PCSK1 Entrez,  Source | proprotein convertase subtilisin/kexin type 1 | 10524 | -0.063 | 0.0752 | No |
104 | PPIG | PPIG Entrez,  Source | peptidylprolyl isomerase G (cyclophilin G) | 10743 | -0.067 | 0.0658 | No |
105 | PAFAH1B1 | PAFAH1B1 Entrez,  Source | platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa | 10816 | -0.069 | 0.0675 | No |
106 | RET | RET Entrez,  Source | ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease) | 11017 | -0.074 | 0.0601 | No |
107 | RING1 | RING1 Entrez,  Source | ring finger protein 1 | 11366 | -0.083 | 0.0426 | No |
108 | GPM6B | GPM6B Entrez,  Source | glycoprotein M6B | 11468 | -0.085 | 0.0439 | No |
109 | NR4A2 | NR4A2 Entrez,  Source | nuclear receptor subfamily 4, group A, member 2 | 11567 | -0.088 | 0.0457 | No |
110 | BIN1 | BIN1 Entrez,  Source | bridging integrator 1 | 12079 | -0.106 | 0.0182 | No |
111 | GTF2A1 | GTF2A1 Entrez,  Source | general transcription factor IIA, 1, 19/37kDa | 12080 | -0.106 | 0.0294 | No |
112 | SCAMP5 | SCAMP5 Entrez,  Source | secretory carrier membrane protein 5 | 12207 | -0.112 | 0.0316 | No |
113 | SLC31A1 | SLC31A1 Entrez,  Source | solute carrier family 31 (copper transporters), member 1 | 12252 | -0.114 | 0.0402 | No |
114 | PRR3 | PRR3 Entrez,  Source | proline rich 3 | 12301 | -0.116 | 0.0487 | No |
115 | FGF13 | FGF13 Entrez,  Source | fibroblast growth factor 13 | 12314 | -0.117 | 0.0601 | No |
116 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | 0.0318 | No |