Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
| Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
| Upregulated in class | double_gel_8d |
| GeneSet | V$FREAC4_01 |
| Enrichment Score (ES) | 0.5490206 |
| Normalized Enrichment Score (NES) | 1.8063732 |
| Nominal p-value | 0.0017152659 |
| FDR q-value | 0.031157728 |
| FWER p-Value | 0.966 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | EMP1 | EMP1 Entrez, Source | epithelial membrane protein 1 | 44 | 0.606 | 0.1067 | Yes |
| 2 | LOX | LOX Entrez, Source | lysyl oxidase | 82 | 0.465 | 0.1884 | Yes |
| 3 | CITED2 | CITED2 Entrez, Source | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | 145 | 0.367 | 0.2503 | Yes |
| 4 | PPP2R3A | PPP2R3A Entrez, Source | protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha | 222 | 0.305 | 0.2999 | Yes |
| 5 | SYT10 | SYT10 Entrez, Source | synaptotagmin X | 515 | 0.180 | 0.3106 | Yes |
| 6 | IGSF4 | IGSF4 Entrez, Source | immunoglobulin superfamily, member 4 | 517 | 0.180 | 0.3431 | Yes |
| 7 | PER2 | PER2 Entrez, Source | period homolog 2 (Drosophila) | 566 | 0.171 | 0.3704 | Yes |
| 8 | LMO3 | LMO3 Entrez, Source | LIM domain only 3 (rhombotin-like 2) | 573 | 0.169 | 0.4006 | Yes |
| 9 | NCDN | NCDN Entrez, Source | neurochondrin | 774 | 0.142 | 0.4113 | Yes |
| 10 | LMO4 | LMO4 Entrez, Source | LIM domain only 4 | 827 | 0.136 | 0.4322 | Yes |
| 11 | PITX2 | PITX2 Entrez, Source | paired-like homeodomain transcription factor 2 | 850 | 0.134 | 0.4549 | Yes |
| 12 | CALD1 | CALD1 Entrez, Source | caldesmon 1 | 920 | 0.127 | 0.4728 | Yes |
| 13 | FGF9 | FGF9 Entrez, Source | fibroblast growth factor 9 (glia-activating factor) | 921 | 0.127 | 0.4959 | Yes |
| 14 | GFRA1 | GFRA1 Entrez, Source | GDNF family receptor alpha 1 | 997 | 0.122 | 0.5123 | Yes |
| 15 | SLC34A3 | SLC34A3 Entrez, Source | solute carrier family 34 (sodium phosphate), member 3 | 1163 | 0.111 | 0.5201 | Yes |
| 16 | NR4A1 | NR4A1 Entrez, Source | nuclear receptor subfamily 4, group A, member 1 | 1192 | 0.110 | 0.5379 | Yes |
| 17 | DUSP1 | DUSP1 Entrez, Source | dual specificity phosphatase 1 | 1297 | 0.104 | 0.5490 | Yes |
| 18 | LEF1 | LEF1 Entrez, Source | lymphoid enhancer-binding factor 1 | 1786 | 0.081 | 0.5270 | No |
| 19 | OSR2 | OSR2 Entrez, Source | odd-skipped related 2 (Drosophila) | 1901 | 0.077 | 0.5323 | No |
| 20 | TNMD | TNMD Entrez, Source | tenomodulin | 2413 | 0.062 | 0.5050 | No |
| 21 | HR | HR Entrez, Source | hairless homolog (mouse) | 2751 | 0.054 | 0.4894 | No |
| 22 | SLC24A2 | SLC24A2 Entrez, Source | solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 | 2944 | 0.050 | 0.4841 | No |
| 23 | PTHR1 | PTHR1 Entrez, Source | parathyroid hormone receptor 1 | 3437 | 0.040 | 0.4543 | No |
| 24 | PHEX | PHEX Entrez, Source | phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) | 3518 | 0.038 | 0.4552 | No |
| 25 | KCNJ13 | KCNJ13 Entrez, Source | potassium inwardly-rectifying channel, subfamily J, member 13 | 3652 | 0.036 | 0.4517 | No |
| 26 | IBSP | IBSP Entrez, Source | integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) | 3929 | 0.031 | 0.4366 | No |
| 27 | CTCF | CTCF Entrez, Source | CCCTC-binding factor (zinc finger protein) | 3967 | 0.031 | 0.4394 | No |
| 28 | PDE7A | PDE7A Entrez, Source | phosphodiesterase 7A | 4231 | 0.027 | 0.4244 | No |
| 29 | BRAF | BRAF Entrez, Source | v-raf murine sarcoma viral oncogene homolog B1 | 4295 | 0.026 | 0.4243 | No |
| 30 | POU3F3 | POU3F3 Entrez, Source | POU domain, class 3, transcription factor 3 | 4509 | 0.022 | 0.4123 | No |
| 31 | GABRR1 | GABRR1 Entrez, Source | gamma-aminobutyric acid (GABA) receptor, rho 1 | 4552 | 0.022 | 0.4131 | No |
| 32 | INHBA | INHBA Entrez, Source | inhibin, beta A (activin A, activin AB alpha polypeptide) | 4596 | 0.021 | 0.4137 | No |
| 33 | KBTBD10 | KBTBD10 Entrez, Source | kelch repeat and BTB (POZ) domain containing 10 | 4678 | 0.020 | 0.4113 | No |
| 34 | PNRC1 | PNRC1 Entrez, Source | proline-rich nuclear receptor coactivator 1 | 4913 | 0.016 | 0.3966 | No |
| 35 | FOXD3 | FOXD3 Entrez, Source | forkhead box D3 | 4916 | 0.016 | 0.3994 | No |
| 36 | PLS3 | PLS3 Entrez, Source | plastin 3 (T isoform) | 5853 | 0.004 | 0.3297 | No |
| 37 | NNAT | NNAT Entrez, Source | neuronatin | 6122 | 0.000 | 0.3096 | No |
| 38 | ALDH1A2 | ALDH1A2 Entrez, Source | aldehyde dehydrogenase 1 family, member A2 | 6558 | -0.005 | 0.2778 | No |
| 39 | ADRB1 | ADRB1 Entrez, Source | adrenergic, beta-1-, receptor | 6857 | -0.009 | 0.2569 | No |
| 40 | IER5 | IER5 Entrez, Source | immediate early response 5 | 6896 | -0.009 | 0.2558 | No |
| 41 | ERG | ERG Entrez, Source | v-ets erythroblastosis virus E26 oncogene homolog (avian) | 6929 | -0.010 | 0.2552 | No |
| 42 | CDKN1A | CDKN1A Entrez, Source | cyclin-dependent kinase inhibitor 1A (p21, Cip1) | 7976 | -0.023 | 0.1806 | No |
| 43 | PTAFR | PTAFR Entrez, Source | platelet-activating factor receptor | 8055 | -0.024 | 0.1791 | No |
| 44 | TCF1 | TCF1 Entrez, Source | transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor | 8123 | -0.025 | 0.1787 | No |
| 45 | DGKI | DGKI Entrez, Source | diacylglycerol kinase, iota | 8499 | -0.031 | 0.1560 | No |
| 46 | OTX1 | OTX1 Entrez, Source | orthodenticle homolog 1 (Drosophila) | 8583 | -0.032 | 0.1556 | No |
| 47 | TLE3 | TLE3 Entrez, Source | transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) | 9039 | -0.038 | 0.1283 | No |
| 48 | TMOD3 | TMOD3 Entrez, Source | tropomodulin 3 (ubiquitous) | 9417 | -0.044 | 0.1078 | No |
| 49 | COLEC12 | COLEC12 Entrez, Source | collectin sub-family member 12 | 9996 | -0.053 | 0.0740 | No |
| 50 | PLUNC | PLUNC Entrez, Source | palate, lung and nasal epithelium carcinoma associated | 10152 | -0.056 | 0.0725 | No |
| 51 | TAF5L | TAF5L Entrez, Source | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa | 10163 | -0.056 | 0.0820 | No |
| 52 | IGF1 | IGF1 Entrez, Source | insulin-like growth factor 1 (somatomedin C) | 10373 | -0.060 | 0.0770 | No |
| 53 | PUM2 | PUM2 Entrez, Source | pumilio homolog 2 (Drosophila) | 10701 | -0.066 | 0.0644 | No |
| 54 | MYH2 | MYH2 Entrez, Source | myosin, heavy chain 2, skeletal muscle, adult | 10824 | -0.069 | 0.0678 | No |
| 55 | TGFB3 | TGFB3 Entrez, Source | transforming growth factor, beta 3 | 10957 | -0.072 | 0.0710 | No |
| 56 | SHOX2 | SHOX2 Entrez, Source | short stature homeobox 2 | 11349 | -0.083 | 0.0565 | No |
| 57 | CYLN2 | CYLN2 Entrez, Source | cytoplasmic linker 2 | 11697 | -0.092 | 0.0471 | No |
| 58 | SLC31A1 | SLC31A1 Entrez, Source | solute carrier family 31 (copper transporters), member 1 | 12252 | -0.114 | 0.0261 | No |
| 59 | HEPH | HEPH Entrez, Source | hephaestin | 12270 | -0.115 | 0.0456 | No |
| 60 | ID2 | ID2 Entrez, Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 13029 | -0.193 | 0.0236 | No |
