Details for gene set V$FREAC7

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in class	double_gel_8d
GeneSet	V$FREAC7_01
Enrichment Score (ES)	0.5058584
Normalized Enrichment Score (NES)	1.7601719
Nominal p-value	0.0
FDR q-value	0.039105605
FWER p-Value	0.996

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CTGF	CTGF Entrez, Source	connective tissue growth factor	32	0.660	0.0933	Yes
2	CXCL2	CXCL2 Entrez, Source	chemokine (C-X-C motif) ligand 2	118	0.402	0.1453	Yes
3	FST	FST Entrez, Source	follistatin	132	0.388	0.2006	Yes
4	TGFB2	TGFB2 Entrez, Source	transforming growth factor, beta 2	367	0.223	0.2153	Yes
5	MGLL	MGLL Entrez, Source	monoglyceride lipase	454	0.195	0.2371	Yes
6	FEZ1	FEZ1 Entrez, Source	fasciculation and elongation protein zeta 1 (zygin I)	468	0.190	0.2637	Yes
7	IGSF4	IGSF4 Entrez, Source	immunoglobulin superfamily, member 4	517	0.180	0.2861	Yes
8	CRH	CRH Entrez, Source	corticotropin releasing hormone	541	0.173	0.3095	Yes
9	IER3	IER3 Entrez, Source	immediate early response 3	598	0.165	0.3293	Yes
10	CSF3	CSF3 Entrez, Source	colony stimulating factor 3 (granulocyte)	685	0.152	0.3449	Yes
11	CBX6	CBX6 Entrez, Source	chromobox homolog 6	704	0.150	0.3653	Yes
12	PLAG1	PLAG1 Entrez, Source	pleiomorphic adenoma gene 1	756	0.144	0.3824	Yes
13	RHOB	RHOB Entrez, Source	ras homolog gene family, member B	785	0.141	0.4007	Yes
14	JUNB	JUNB Entrez, Source	jun B proto-oncogene	866	0.132	0.4139	Yes
15	FGF9	FGF9 Entrez, Source	fibroblast growth factor 9 (glia-activating factor)	921	0.127	0.4283	Yes
16	GDF8	GDF8 Entrez, Source	growth differentiation factor 8	923	0.127	0.4466	Yes
17	TWIST1	TWIST1 Entrez, Source	twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)	978	0.123	0.4605	Yes
18	TYRO3	TYRO3 Entrez, Source	TYRO3 protein tyrosine kinase	1250	0.107	0.4556	Yes
19	EFNA5	EFNA5 Entrez, Source	ephrin-A5	1436	0.097	0.4557	Yes
20	ATP1B4	ATP1B4 Entrez, Source	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	1447	0.096	0.4689	Yes
21	POU2F1	POU2F1 Entrez, Source	POU domain, class 2, transcription factor 1	1475	0.095	0.4807	Yes
22	SSH3	SSH3 Entrez, Source	slingshot homolog 3 (Drosophila)	1512	0.093	0.4915	Yes
23	LCP2	LCP2 Entrez, Source	lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	1811	0.080	0.4807	Yes
24	PRKAG1	PRKAG1 Entrez, Source	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	1908	0.076	0.4845	Yes
25	NRG1	NRG1 Entrez, Source	neuregulin 1	1967	0.074	0.4909	Yes
26	PTF1A	PTF1A Entrez, Source	pancreas specific transcription factor, 1a	2008	0.073	0.4985	Yes
27	NPPB	NPPB Entrez, Source	natriuretic peptide precursor B	2084	0.070	0.5030	Yes
28	NOVA1	NOVA1 Entrez, Source	neuro-oncological ventral antigen 1	2178	0.068	0.5059	Yes
29	SYT6	SYT6 Entrez, Source	synaptotagmin VI	2331	0.064	0.5036	No
30	TIMM8B	TIMM8B Entrez, Source	translocase of inner mitochondrial membrane 8 homolog B (yeast)	2536	0.059	0.4968	No
31	NFIB	NFIB Entrez, Source	nuclear factor I/B	3057	0.047	0.4645	No
32	IBSP	IBSP Entrez, Source	integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)	3929	0.031	0.4034	No
33	BRAF	BRAF Entrez, Source	v-raf murine sarcoma viral oncogene homolog B1	4295	0.026	0.3796	No
34	TSHB	TSHB Entrez, Source	thyroid stimulating hormone, beta	4327	0.025	0.3809	No
35	EPN1	EPN1 Entrez, Source	epsin 1	4431	0.023	0.3765	No
36	CSNK1G3	CSNK1G3 Entrez, Source	casein kinase 1, gamma 3	4483	0.023	0.3759	No
37	FOXD3	FOXD3 Entrez, Source	forkhead box D3	4916	0.016	0.3457	No
38	HAND2	HAND2 Entrez, Source	heart and neural crest derivatives expressed 2	5226	0.012	0.3242	No
39	CSNK1E	CSNK1E Entrez, Source	casein kinase 1, epsilon	5823	0.004	0.2799	No
40	ACCN1	ACCN1 Entrez, Source	amiloride-sensitive cation channel 1, neuronal (degenerin)	6187	-0.000	0.2526	No
41	NFYA	NFYA Entrez, Source	nuclear transcription factor Y, alpha	6517	-0.005	0.2285	No
42	NRAS	NRAS Entrez, Source	neuroblastoma RAS viral (v-ras) oncogene homolog	6534	-0.005	0.2279	No
43	RUNX2	RUNX2 Entrez, Source	runt-related transcription factor 2	6625	-0.006	0.2220	No
44	PPP1CB	PPP1CB Entrez, Source	protein phosphatase 1, catalytic subunit, beta isoform	6632	-0.006	0.2225	No
45	SDHD	SDHD Entrez, Source	succinate dehydrogenase complex, subunit D, integral membrane protein	6671	-0.007	0.2206	No
46	NEUROD2	NEUROD2 Entrez, Source	neurogenic differentiation 2	6765	-0.008	0.2147	No
47	OGG1	OGG1 Entrez, Source	8-oxoguanine DNA glycosylase	7030	-0.011	0.1964	No
48	DNAJA4	DNAJA4 Entrez, Source	DnaJ (Hsp40) homolog, subfamily A, member 4	7044	-0.011	0.1971	No
49	GRM3	GRM3 Entrez, Source	glutamate receptor, metabotropic 3	7053	-0.011	0.1981	No
50	FLOT1	FLOT1 Entrez, Source	flotillin 1	7222	-0.013	0.1874	No
51	VCP	VCP Entrez, Source	valosin-containing protein	7423	-0.016	0.1746	No
52	ALPL	ALPL Entrez, Source	alkaline phosphatase, liver/bone/kidney	7438	-0.016	0.1758	No
53	BUB3	BUB3 Entrez, Source	BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)	7602	-0.018	0.1662	No
54	NTF3	NTF3 Entrez, Source	neurotrophin 3	7788	-0.021	0.1552	No
55	MCART1	MCART1 Entrez, Source	mitochondrial carrier triple repeat 1	7845	-0.021	0.1541	No
56	GALNT1	GALNT1 Entrez, Source	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)	7850	-0.021	0.1569	No
57	PACSIN3	PACSIN3 Entrez, Source	protein kinase C and casein kinase substrate in neurons 3	7941	-0.023	0.1534	No
58	CLDN8	CLDN8 Entrez, Source	claudin 8	8413	-0.030	0.1222	No
59	BAMBI	BAMBI Entrez, Source	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	8540	-0.031	0.1172	No
60	MID1	MID1 Entrez, Source	midline 1 (Opitz/BBB syndrome)	9243	-0.041	0.0702	No
61	CGA	CGA Entrez, Source	glycoprotein hormones, alpha polypeptide	9437	-0.044	0.0620	No
62	CACNA2D3	CACNA2D3 Entrez, Source	calcium channel, voltage-dependent, alpha 2/delta 3 subunit	9729	-0.049	0.0472	No
63	GPR109A	GPR109A Entrez, Source	G protein-coupled receptor 109A	9976	-0.053	0.0364	No
64	CXXC5	CXXC5 Entrez, Source	CXXC finger 5	10086	-0.055	0.0361	No
65	PPP2R2B	PPP2R2B Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	10110	-0.055	0.0424	No
66	DRG1	DRG1 Entrez, Source	developmentally regulated GTP binding protein 1	10839	-0.069	-0.0024	No
67	STOML2	STOML2 Entrez, Source	stomatin (EPB72)-like 2	10942	-0.072	0.0003	No
68	PMCH	PMCH Entrez, Source	pro-melanin-concentrating hormone	11172	-0.078	-0.0057	No
69	GATA4	GATA4 Entrez, Source	GATA binding protein 4	11355	-0.083	-0.0073	No
70	PAX3	PAX3 Entrez, Source	paired box gene 3 (Waardenburg syndrome 1)	11737	-0.093	-0.0225	No
71	FBXO11	FBXO11 Entrez, Source	F-box protein 11	11774	-0.094	-0.0116	No
72	GTF2A1	GTF2A1 Entrez, Source	general transcription factor IIA, 1, 19/37kDa	12080	-0.106	-0.0191	No
73	CH25H	CH25H Entrez, Source	cholesterol 25-hydroxylase	12118	-0.108	-0.0062	No
74	PLEC1	PLEC1 Entrez, Source	plectin 1, intermediate filament binding protein 500kDa	12297	-0.116	-0.0028	No
75	MAGED2	MAGED2 Entrez, Source	melanoma antigen family D, 2	12317	-0.117	0.0127	No
76	SSBP3	SSBP3 Entrez, Source	single stranded DNA binding protein 3	12700	-0.142	0.0045	No
77	ABCA1	ABCA1 Entrez, Source	ATP-binding cassette, sub-family A (ABC1), member 1	13254	-0.302	0.0066	No