Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_double_gel_72h.class.cls
#double_gel_8d_versus_double_gel_72h_repos
Phenotypeclass.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in classdouble_gel_8d
GeneSetV$HNF3B_01
Enrichment Score (ES)0.5074572
Normalized Enrichment Score (NES)1.8114653
Nominal p-value0.0
FDR q-value0.030570155
FWER p-Value0.958
Table: GSEA Results Summary



Fig 1: Enrichment plot: V$HNF3B_01   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ANXA1ANXA1
Entrez,  Source
annexin A1100.8150.1042Yes
2EGR2EGR2
Entrez,  Source
early growth response 2 (Krox-20 homolog, Drosophila)1300.3900.1455Yes
3CITED2CITED2
Entrez,  Source
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 21450.3670.1917Yes
4GPM6AGPM6A
Entrez,  Source
glycoprotein M6A2210.3050.2253Yes
5PLA1APLA1A
Entrez,  Source
phospholipase A1 member A3140.2430.2496Yes
6ENPEPENPEP
Entrez,  Source
glutamyl aminopeptidase (aminopeptidase A)3380.2340.2780Yes
7RBP4RBP4
Entrez,  Source
retinol binding protein 4, plasma5540.1720.2839Yes
8CYR61CYR61
Entrez,  Source
cysteine-rich, angiogenic inducer, 615590.1710.3056Yes
9BAIAP2BAIAP2
Entrez,  Source
BAI1-associated protein 25720.1690.3264Yes
10LMO3LMO3
Entrez,  Source
LIM domain only 3 (rhombotin-like 2)5730.1690.3481Yes
11IER3IER3
Entrez,  Source
immediate early response 35980.1650.3675Yes
12OTX2OTX2
Entrez,  Source
orthodenticle homolog 2 (Drosophila)7080.1500.3786Yes
13PLAG1PLAG1
Entrez,  Source
pleiomorphic adenoma gene 17560.1440.3936Yes
14NCDNNCDN
Entrez,  Source
neurochondrin7740.1420.4106Yes
15LMO4LMO4
Entrez,  Source
LIM domain only 48270.1360.4242Yes
16CALD1CALD1
Entrez,  Source
caldesmon 19200.1270.4337Yes
17GFRA1GFRA1
Entrez,  Source
GDNF family receptor alpha 19970.1220.4436Yes
18PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha10680.1160.4533Yes
19TYRO3TYRO3
Entrez,  Source
TYRO3 protein tyrosine kinase12500.1070.4535Yes
20DUSP1DUSP1
Entrez,  Source
dual specificity phosphatase 112970.1040.4634Yes
21ATP1B4ATP1B4
Entrez,  Source
ATPase, (Na+)/K+ transporting, beta 4 polypeptide14470.0960.4646Yes
22SSH3SSH3
Entrez,  Source
slingshot homolog 3 (Drosophila)15120.0930.4718Yes
23TLE4TLE4
Entrez,  Source
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)16720.0860.4708Yes
24SULF2SULF2
Entrez,  Source
sulfatase 216990.0850.4798Yes
25SLC16A6SLC16A6
Entrez,  Source
solute carrier family 16, member 6 (monocarboxylic acid transporter 7)17750.0810.4846Yes
26ATP2A3ATP2A3
Entrez,  Source
ATPase, Ca++ transporting, ubiquitous18000.0800.4931Yes
27LCP2LCP2
Entrez,  Source
lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)18110.0800.5026Yes
28FOXA2FOXA2
Entrez,  Source
forkhead box A218800.0770.5075Yes
29FUT8FUT8
Entrez,  Source
fucosyltransferase 8 (alpha (1,6) fucosyltransferase)22700.0650.4865No
30TNMDTNMD
Entrez,  Source
tenomodulin24130.0620.4838No
31TTRTTR
Entrez,  Source
transthyretin (prealbumin, amyloidosis type I)25250.0590.4830No
32TNFTNF
Entrez,  Source
tumor necrosis factor (TNF superfamily, member 2)27700.0530.4714No
33NFIXNFIX
Entrez,  Source
nuclear factor I/X (CCAAT-binding transcription factor)29460.0500.4647No
34HOXA4HOXA4
Entrez,  Source
homeobox A430200.0480.4653No
35NFIBNFIB
Entrez,  Source
nuclear factor I/B30570.0470.4687No
36PHEXPHEX
Entrez,  Source
phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets)35180.0380.4390No
37ZFHX1BZFHX1B
Entrez,  Source
zinc finger homeobox 1b38020.0330.4219No
38TWIST2TWIST2
Entrez,  Source
twist homolog 2 (Drosophila)38290.0330.4242No
39IBSPIBSP
Entrez,  Source
integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)39290.0310.4208No
40NFATC4NFATC4
Entrez,  Source
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 440510.0290.4154No
41OPRM1OPRM1
Entrez,  Source
opioid receptor, mu 140710.0290.4177No
42ORC4LORC4L
Entrez,  Source
origin recognition complex, subunit 4-like (yeast)40800.0290.4209No
43HAS2HAS2
Entrez,  Source
hyaluronan synthase 243520.0250.4036No
44INHBAINHBA
Entrez,  Source
inhibin, beta A (activin A, activin AB alpha polypeptide)45960.0210.3880No
45VAX1VAX1
Entrez,  Source
ventral anterior homeobox 147210.0190.3811No
46CYP26B1CYP26B1
Entrez,  Source
cytochrome P450, family 26, subfamily B, polypeptide 148790.0170.3715No
47LHX5LHX5
Entrez,  Source
LIM homeobox 551040.0140.3564No
48LTALTA
Entrez,  Source
lymphotoxin alpha (TNF superfamily, member 1)51750.0130.3528No
49ID1ID1
Entrez,  Source
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein52960.0110.3452No
50SLC6A4SLC6A4
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, serotonin), member 453900.0100.3394No
51CACNA1HCACNA1H
Entrez,  Source
calcium channel, voltage-dependent, alpha 1H subunit58440.0040.3058No
52PVRL1PVRL1
Entrez,  Source
poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin)60700.0010.2889No
53ELMO3ELMO3
Entrez,  Source
engulfment and cell motility 36445-0.0040.2612No
54RUNX2RUNX2
Entrez,  Source
runt-related transcription factor 26625-0.0060.2485No
55PPP1CBPPP1CB
Entrez,  Source
protein phosphatase 1, catalytic subunit, beta isoform6632-0.0060.2488No
56NEUROD2NEUROD2
Entrez,  Source
neurogenic differentiation 26765-0.0080.2399No
57TAC1TAC1
Entrez,  Source
tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma)6828-0.0080.2363No
58DNAJA4DNAJA4
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily A, member 47044-0.0110.2215No
59FLOT1FLOT1
Entrez,  Source
flotillin 17222-0.0130.2099No
60GABRA1GABRA1
Entrez,  Source
gamma-aminobutyric acid (GABA) A receptor, alpha 17416-0.0160.1973No
61WNT4WNT4
Entrez,  Source
wingless-type MMTV integration site family, member 47687-0.0190.1794No
62ABT1ABT1
Entrez,  Source
activator of basal transcription 17714-0.0200.1800No
63IL5IL5
Entrez,  Source
interleukin 5 (colony-stimulating factor, eosinophil)7748-0.0200.1801No
64MCART1MCART1
Entrez,  Source
mitochondrial carrier triple repeat 17845-0.0210.1756No
65TOB1TOB1
Entrez,  Source
transducer of ERBB2, 18322-0.0280.1433No
66BAMBIBAMBI
Entrez,  Source
BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)8540-0.0310.1310No
67ITPKBITPKB
Entrez,  Source
inositol 1,4,5-trisphosphate 3-kinase B8579-0.0320.1322No
68PLCB1PLCB1
Entrez,  Source
phospholipase C, beta 1 (phosphoinositide-specific)8757-0.0340.1233No
69PPP1R10PPP1R10
Entrez,  Source
protein phosphatase 1, regulatory subunit 109190-0.0400.0959No
70CDK6CDK6
Entrez,  Source
cyclin-dependent kinase 69565-0.0460.0736No
71PNMA1PNMA1
Entrez,  Source
paraneoplastic antigen MA19848-0.0510.0589No
72POU3F4POU3F4
Entrez,  Source
POU domain, class 3, transcription factor 49971-0.0530.0565No
73MRPS18BMRPS18B
Entrez,  Source
mitochondrial ribosomal protein S18B10423-0.0610.0303No
74ACCN5ACCN5
Entrez,  Source
amiloride-sensitive cation channel 5, intestinal10875-0.0700.0053No
75PDCD4PDCD4
Entrez,  Source
programmed cell death 4 (neoplastic transformation inhibitor)10963-0.0730.0081No
76RAB3IPRAB3IP
Entrez,  Source
RAB3A interacting protein (rabin3)10986-0.0730.0159No
77CHN2CHN2
Entrez,  Source
chimerin (chimaerin) 211079-0.0750.0186No
78EPHB1EPHB1
Entrez,  Source
EPH receptor B111671-0.091-0.0143No
79CYLN2CYLN2
Entrez,  Source
cytoplasmic linker 211697-0.092-0.0044No
80GTF2A1GTF2A1
Entrez,  Source
general transcription factor IIA, 1, 19/37kDa12080-0.106-0.0195No
81ISG20ISG20
Entrez,  Source
interferon stimulated exonuclease gene 20kDa12100-0.107-0.0071No
82FGF13FGF13
Entrez,  Source
fibroblast growth factor 1312314-0.117-0.0082No
83DRD3DRD3
Entrez,  Source
dopamine receptor D312734-0.145-0.0211No
84SERPIND1SERPIND1
Entrez,  Source
serpin peptidase inhibitor, clade D (heparin cofactor), member 112846-0.158-0.0091No
85DMDDMD
Entrez,  Source
dystrophin (muscular dystrophy, Duchenne and Becker types)12922-0.1680.0068No
86ID2ID2
Entrez,  Source
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein13029-0.1930.0236No
Table: GSEA details [plain text format]



Fig 2: V$HNF3B_01   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: V$HNF3B_01: Random ES distribution   
Gene set null distribution of ES for V$HNF3B_01