Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | V$HNF3B_01 |
Enrichment Score (ES) | 0.5074572 |
Normalized Enrichment Score (NES) | 1.8114653 |
Nominal p-value | 0.0 |
FDR q-value | 0.030570155 |
FWER p-Value | 0.958 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | ANXA1 | ANXA1 Entrez,  Source | annexin A1 | 10 | 0.815 | 0.1042 | Yes |
2 | EGR2 | EGR2 Entrez,  Source | early growth response 2 (Krox-20 homolog, Drosophila) | 130 | 0.390 | 0.1455 | Yes |
3 | CITED2 | CITED2 Entrez,  Source | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | 145 | 0.367 | 0.1917 | Yes |
4 | GPM6A | GPM6A Entrez,  Source | glycoprotein M6A | 221 | 0.305 | 0.2253 | Yes |
5 | PLA1A | PLA1A Entrez,  Source | phospholipase A1 member A | 314 | 0.243 | 0.2496 | Yes |
6 | ENPEP | ENPEP Entrez,  Source | glutamyl aminopeptidase (aminopeptidase A) | 338 | 0.234 | 0.2780 | Yes |
7 | RBP4 | RBP4 Entrez,  Source | retinol binding protein 4, plasma | 554 | 0.172 | 0.2839 | Yes |
8 | CYR61 | CYR61 Entrez,  Source | cysteine-rich, angiogenic inducer, 61 | 559 | 0.171 | 0.3056 | Yes |
9 | BAIAP2 | BAIAP2 Entrez,  Source | BAI1-associated protein 2 | 572 | 0.169 | 0.3264 | Yes |
10 | LMO3 | LMO3 Entrez,  Source | LIM domain only 3 (rhombotin-like 2) | 573 | 0.169 | 0.3481 | Yes |
11 | IER3 | IER3 Entrez,  Source | immediate early response 3 | 598 | 0.165 | 0.3675 | Yes |
12 | OTX2 | OTX2 Entrez,  Source | orthodenticle homolog 2 (Drosophila) | 708 | 0.150 | 0.3786 | Yes |
13 | PLAG1 | PLAG1 Entrez,  Source | pleiomorphic adenoma gene 1 | 756 | 0.144 | 0.3936 | Yes |
14 | NCDN | NCDN Entrez,  Source | neurochondrin | 774 | 0.142 | 0.4106 | Yes |
15 | LMO4 | LMO4 Entrez,  Source | LIM domain only 4 | 827 | 0.136 | 0.4242 | Yes |
16 | CALD1 | CALD1 Entrez,  Source | caldesmon 1 | 920 | 0.127 | 0.4337 | Yes |
17 | GFRA1 | GFRA1 Entrez,  Source | GDNF family receptor alpha 1 | 997 | 0.122 | 0.4436 | Yes |
18 | PPARGC1A | PPARGC1A Entrez,  Source | peroxisome proliferative activated receptor, gamma, coactivator 1, alpha | 1068 | 0.116 | 0.4533 | Yes |
19 | TYRO3 | TYRO3 Entrez,  Source | TYRO3 protein tyrosine kinase | 1250 | 0.107 | 0.4535 | Yes |
20 | DUSP1 | DUSP1 Entrez,  Source | dual specificity phosphatase 1 | 1297 | 0.104 | 0.4634 | Yes |
21 | ATP1B4 | ATP1B4 Entrez,  Source | ATPase, (Na+)/K+ transporting, beta 4 polypeptide | 1447 | 0.096 | 0.4646 | Yes |
22 | SSH3 | SSH3 Entrez,  Source | slingshot homolog 3 (Drosophila) | 1512 | 0.093 | 0.4718 | Yes |
23 | TLE4 | TLE4 Entrez,  Source | transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) | 1672 | 0.086 | 0.4708 | Yes |
24 | SULF2 | SULF2 Entrez,  Source | sulfatase 2 | 1699 | 0.085 | 0.4798 | Yes |
25 | SLC16A6 | SLC16A6 Entrez,  Source | solute carrier family 16, member 6 (monocarboxylic acid transporter 7) | 1775 | 0.081 | 0.4846 | Yes |
26 | ATP2A3 | ATP2A3 Entrez,  Source | ATPase, Ca++ transporting, ubiquitous | 1800 | 0.080 | 0.4931 | Yes |
27 | LCP2 | LCP2 Entrez,  Source | lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) | 1811 | 0.080 | 0.5026 | Yes |
28 | FOXA2 | FOXA2 Entrez,  Source | forkhead box A2 | 1880 | 0.077 | 0.5075 | Yes |
29 | FUT8 | FUT8 Entrez,  Source | fucosyltransferase 8 (alpha (1,6) fucosyltransferase) | 2270 | 0.065 | 0.4865 | No |
30 | TNMD | TNMD Entrez,  Source | tenomodulin | 2413 | 0.062 | 0.4838 | No |
31 | TTR | TTR Entrez,  Source | transthyretin (prealbumin, amyloidosis type I) | 2525 | 0.059 | 0.4830 | No |
32 | TNF | TNF Entrez,  Source | tumor necrosis factor (TNF superfamily, member 2) | 2770 | 0.053 | 0.4714 | No |
33 | NFIX | NFIX Entrez,  Source | nuclear factor I/X (CCAAT-binding transcription factor) | 2946 | 0.050 | 0.4647 | No |
34 | HOXA4 | HOXA4 Entrez,  Source | homeobox A4 | 3020 | 0.048 | 0.4653 | No |
35 | NFIB | NFIB Entrez,  Source | nuclear factor I/B | 3057 | 0.047 | 0.4687 | No |
36 | PHEX | PHEX Entrez,  Source | phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) | 3518 | 0.038 | 0.4390 | No |
37 | ZFHX1B | ZFHX1B Entrez,  Source | zinc finger homeobox 1b | 3802 | 0.033 | 0.4219 | No |
38 | TWIST2 | TWIST2 Entrez,  Source | twist homolog 2 (Drosophila) | 3829 | 0.033 | 0.4242 | No |
39 | IBSP | IBSP Entrez,  Source | integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) | 3929 | 0.031 | 0.4208 | No |
40 | NFATC4 | NFATC4 Entrez,  Source | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 | 4051 | 0.029 | 0.4154 | No |
41 | OPRM1 | OPRM1 Entrez,  Source | opioid receptor, mu 1 | 4071 | 0.029 | 0.4177 | No |
42 | ORC4L | ORC4L Entrez,  Source | origin recognition complex, subunit 4-like (yeast) | 4080 | 0.029 | 0.4209 | No |
43 | HAS2 | HAS2 Entrez,  Source | hyaluronan synthase 2 | 4352 | 0.025 | 0.4036 | No |
44 | INHBA | INHBA Entrez,  Source | inhibin, beta A (activin A, activin AB alpha polypeptide) | 4596 | 0.021 | 0.3880 | No |
45 | VAX1 | VAX1 Entrez,  Source | ventral anterior homeobox 1 | 4721 | 0.019 | 0.3811 | No |
46 | CYP26B1 | CYP26B1 Entrez,  Source | cytochrome P450, family 26, subfamily B, polypeptide 1 | 4879 | 0.017 | 0.3715 | No |
47 | LHX5 | LHX5 Entrez,  Source | LIM homeobox 5 | 5104 | 0.014 | 0.3564 | No |
48 | LTA | LTA Entrez,  Source | lymphotoxin alpha (TNF superfamily, member 1) | 5175 | 0.013 | 0.3528 | No |
49 | ID1 | ID1 Entrez,  Source | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 5296 | 0.011 | 0.3452 | No |
50 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 5390 | 0.010 | 0.3394 | No |
51 | CACNA1H | CACNA1H Entrez,  Source | calcium channel, voltage-dependent, alpha 1H subunit | 5844 | 0.004 | 0.3058 | No |
52 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 6070 | 0.001 | 0.2889 | No |
53 | ELMO3 | ELMO3 Entrez,  Source | engulfment and cell motility 3 | 6445 | -0.004 | 0.2612 | No |
54 | RUNX2 | RUNX2 Entrez,  Source | runt-related transcription factor 2 | 6625 | -0.006 | 0.2485 | No |
55 | PPP1CB | PPP1CB Entrez,  Source | protein phosphatase 1, catalytic subunit, beta isoform | 6632 | -0.006 | 0.2488 | No |
56 | NEUROD2 | NEUROD2 Entrez,  Source | neurogenic differentiation 2 | 6765 | -0.008 | 0.2399 | No |
57 | TAC1 | TAC1 Entrez,  Source | tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma) | 6828 | -0.008 | 0.2363 | No |
58 | DNAJA4 | DNAJA4 Entrez,  Source | DnaJ (Hsp40) homolog, subfamily A, member 4 | 7044 | -0.011 | 0.2215 | No |
59 | FLOT1 | FLOT1 Entrez,  Source | flotillin 1 | 7222 | -0.013 | 0.2099 | No |
60 | GABRA1 | GABRA1 Entrez,  Source | gamma-aminobutyric acid (GABA) A receptor, alpha 1 | 7416 | -0.016 | 0.1973 | No |
61 | WNT4 | WNT4 Entrez,  Source | wingless-type MMTV integration site family, member 4 | 7687 | -0.019 | 0.1794 | No |
62 | ABT1 | ABT1 Entrez,  Source | activator of basal transcription 1 | 7714 | -0.020 | 0.1800 | No |
63 | IL5 | IL5 Entrez,  Source | interleukin 5 (colony-stimulating factor, eosinophil) | 7748 | -0.020 | 0.1801 | No |
64 | MCART1 | MCART1 Entrez,  Source | mitochondrial carrier triple repeat 1 | 7845 | -0.021 | 0.1756 | No |
65 | TOB1 | TOB1 Entrez,  Source | transducer of ERBB2, 1 | 8322 | -0.028 | 0.1433 | No |
66 | BAMBI | BAMBI Entrez,  Source | BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) | 8540 | -0.031 | 0.1310 | No |
67 | ITPKB | ITPKB Entrez,  Source | inositol 1,4,5-trisphosphate 3-kinase B | 8579 | -0.032 | 0.1322 | No |
68 | PLCB1 | PLCB1 Entrez,  Source | phospholipase C, beta 1 (phosphoinositide-specific) | 8757 | -0.034 | 0.1233 | No |
69 | PPP1R10 | PPP1R10 Entrez,  Source | protein phosphatase 1, regulatory subunit 10 | 9190 | -0.040 | 0.0959 | No |
70 | CDK6 | CDK6 Entrez,  Source | cyclin-dependent kinase 6 | 9565 | -0.046 | 0.0736 | No |
71 | PNMA1 | PNMA1 Entrez,  Source | paraneoplastic antigen MA1 | 9848 | -0.051 | 0.0589 | No |
72 | POU3F4 | POU3F4 Entrez,  Source | POU domain, class 3, transcription factor 4 | 9971 | -0.053 | 0.0565 | No |
73 | MRPS18B | MRPS18B Entrez,  Source | mitochondrial ribosomal protein S18B | 10423 | -0.061 | 0.0303 | No |
74 | ACCN5 | ACCN5 Entrez,  Source | amiloride-sensitive cation channel 5, intestinal | 10875 | -0.070 | 0.0053 | No |
75 | PDCD4 | PDCD4 Entrez,  Source | programmed cell death 4 (neoplastic transformation inhibitor) | 10963 | -0.073 | 0.0081 | No |
76 | RAB3IP | RAB3IP Entrez,  Source | RAB3A interacting protein (rabin3) | 10986 | -0.073 | 0.0159 | No |
77 | CHN2 | CHN2 Entrez,  Source | chimerin (chimaerin) 2 | 11079 | -0.075 | 0.0186 | No |
78 | EPHB1 | EPHB1 Entrez,  Source | EPH receptor B1 | 11671 | -0.091 | -0.0143 | No |
79 | CYLN2 | CYLN2 Entrez,  Source | cytoplasmic linker 2 | 11697 | -0.092 | -0.0044 | No |
80 | GTF2A1 | GTF2A1 Entrez,  Source | general transcription factor IIA, 1, 19/37kDa | 12080 | -0.106 | -0.0195 | No |
81 | ISG20 | ISG20 Entrez,  Source | interferon stimulated exonuclease gene 20kDa | 12100 | -0.107 | -0.0071 | No |
82 | FGF13 | FGF13 Entrez,  Source | fibroblast growth factor 13 | 12314 | -0.117 | -0.0082 | No |
83 | DRD3 | DRD3 Entrez,  Source | dopamine receptor D3 | 12734 | -0.145 | -0.0211 | No |
84 | SERPIND1 | SERPIND1 Entrez,  Source | serpin peptidase inhibitor, clade D (heparin cofactor), member 1 | 12846 | -0.158 | -0.0091 | No |
85 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | 0.0068 | No |
86 | ID2 | ID2 Entrez,  Source | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein | 13029 | -0.193 | 0.0236 | No |