Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos |
Phenotype | class.cls#double_gel_8d_versus_double_gel_72h_repos |
Upregulated in class | double_gel_8d |
GeneSet | V$OCT1_B |
Enrichment Score (ES) | 0.48098558 |
Normalized Enrichment Score (NES) | 1.7754278 |
Nominal p-value | 0.0 |
FDR q-value | 0.035832476 |
FWER p-Value | 0.993 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | LPL | LPL Entrez,  Source | lipoprotein lipase | 24 | 0.680 | 0.0700 | Yes |
2 | MAF | MAF Entrez,  Source | v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) | 73 | 0.484 | 0.1176 | Yes |
3 | CDH13 | CDH13 Entrez,  Source | cadherin 13, H-cadherin (heart) | 128 | 0.391 | 0.1548 | Yes |
4 | EGR2 | EGR2 Entrez,  Source | early growth response 2 (Krox-20 homolog, Drosophila) | 130 | 0.390 | 0.1959 | Yes |
5 | FOXP1 | FOXP1 Entrez,  Source | forkhead box P1 | 174 | 0.343 | 0.2290 | Yes |
6 | GPM6A | GPM6A Entrez,  Source | glycoprotein M6A | 221 | 0.305 | 0.2577 | Yes |
7 | PPP2R3A | PPP2R3A Entrez,  Source | protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha | 222 | 0.305 | 0.2899 | Yes |
8 | PFKFB1 | PFKFB1 Entrez,  Source | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 | 311 | 0.244 | 0.3091 | Yes |
9 | DPYSL3 | DPYSL3 Entrez,  Source | dihydropyrimidinase-like 3 | 499 | 0.182 | 0.3142 | Yes |
10 | IGSF4 | IGSF4 Entrez,  Source | immunoglobulin superfamily, member 4 | 517 | 0.180 | 0.3319 | Yes |
11 | ADORA1 | ADORA1 Entrez,  Source | adenosine A1 receptor | 547 | 0.173 | 0.3479 | Yes |
12 | CYR61 | CYR61 Entrez,  Source | cysteine-rich, angiogenic inducer, 61 | 559 | 0.171 | 0.3651 | Yes |
13 | CPD | CPD Entrez,  Source | carboxypeptidase D | 565 | 0.171 | 0.3828 | Yes |
14 | LMO3 | LMO3 Entrez,  Source | LIM domain only 3 (rhombotin-like 2) | 573 | 0.169 | 0.4001 | Yes |
15 | CSF3 | CSF3 Entrez,  Source | colony stimulating factor 3 (granulocyte) | 685 | 0.152 | 0.4078 | Yes |
16 | NR1D1 | NR1D1 Entrez,  Source | nuclear receptor subfamily 1, group D, member 1 | 688 | 0.151 | 0.4236 | Yes |
17 | OTX2 | OTX2 Entrez,  Source | orthodenticle homolog 2 (Drosophila) | 708 | 0.150 | 0.4380 | Yes |
18 | NFIA | NFIA Entrez,  Source | nuclear factor I/A | 743 | 0.145 | 0.4508 | Yes |
19 | RHOB | RHOB Entrez,  Source | ras homolog gene family, member B | 785 | 0.141 | 0.4625 | Yes |
20 | TWIST1 | TWIST1 Entrez,  Source | twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) | 978 | 0.123 | 0.4611 | Yes |
21 | ALDH1A1 | ALDH1A1 Entrez,  Source | aldehyde dehydrogenase 1 family, member A1 | 1183 | 0.110 | 0.4573 | Yes |
22 | SLC1A2 | SLC1A2 Entrez,  Source | solute carrier family 1 (glial high affinity glutamate transporter), member 2 | 1215 | 0.109 | 0.4665 | Yes |
23 | BDNF | BDNF Entrez,  Source | brain-derived neurotrophic factor | 1267 | 0.106 | 0.4738 | Yes |
24 | DLGAP4 | DLGAP4 Entrez,  Source | discs, large (Drosophila) homolog-associated protein 4 | 1317 | 0.103 | 0.4810 | Yes |
25 | CDX2 | CDX2 Entrez,  Source | caudal type homeobox transcription factor 2 | 1760 | 0.082 | 0.4563 | No |
26 | NEUROG1 | NEUROG1 Entrez,  Source | neurogenin 1 | 1887 | 0.077 | 0.4549 | No |
27 | FGF12 | FGF12 Entrez,  Source | fibroblast growth factor 12 | 1947 | 0.075 | 0.4583 | No |
28 | FZD2 | FZD2 Entrez,  Source | frizzled homolog 2 (Drosophila) | 2019 | 0.073 | 0.4606 | No |
29 | TBXAS1 | TBXAS1 Entrez,  Source | thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) | 2143 | 0.069 | 0.4586 | No |
30 | VSNL1 | VSNL1 Entrez,  Source | visinin-like 1 | 2169 | 0.068 | 0.4639 | No |
31 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 2181 | 0.068 | 0.4702 | No |
32 | TAS2R13 | TAS2R13 Entrez,  Source | taste receptor, type 2, member 13 | 2202 | 0.067 | 0.4758 | No |
33 | STAT4 | STAT4 Entrez,  Source | signal transducer and activator of transcription 4 | 2250 | 0.066 | 0.4792 | No |
34 | BCL2 | BCL2 Entrez,  Source | B-cell CLL/lymphoma 2 | 2324 | 0.064 | 0.4805 | No |
35 | GPC4 | GPC4 Entrez,  Source | glypican 4 | 2553 | 0.058 | 0.4694 | No |
36 | ARPC5 | ARPC5 Entrez,  Source | actin related protein 2/3 complex, subunit 5, 16kDa | 2584 | 0.058 | 0.4733 | No |
37 | SLC6A15 | SLC6A15 Entrez,  Source | solute carrier family 6, member 15 | 2585 | 0.058 | 0.4794 | No |
38 | POLM | POLM Entrez,  Source | polymerase (DNA directed), mu | 2722 | 0.054 | 0.4748 | No |
39 | MRAS | MRAS Entrez,  Source | muscle RAS oncogene homolog | 2774 | 0.053 | 0.4766 | No |
40 | SFRP2 | SFRP2 Entrez,  Source | secreted frizzled-related protein 2 | 3041 | 0.048 | 0.4615 | No |
41 | H3F3B | H3F3B Entrez,  Source | H3 histone, family 3B (H3.3B) | 3095 | 0.047 | 0.4625 | No |
42 | NR2C2 | NR2C2 Entrez,  Source | nuclear receptor subfamily 2, group C, member 2 | 3297 | 0.043 | 0.4518 | No |
43 | GNB3 | GNB3 Entrez,  Source | guanine nucleotide binding protein (G protein), beta polypeptide 3 | 3360 | 0.041 | 0.4515 | No |
44 | TRPM1 | TRPM1 Entrez,  Source | transient receptor potential cation channel, subfamily M, member 1 | 3998 | 0.030 | 0.4065 | No |
45 | SLC39A13 | SLC39A13 Entrez,  Source | solute carrier family 39 (zinc transporter), member 13 | 4119 | 0.028 | 0.4005 | No |
46 | DUSP6 | DUSP6 Entrez,  Source | dual specificity phosphatase 6 | 4288 | 0.026 | 0.3905 | No |
47 | CDK2 | CDK2 Entrez,  Source | cyclin-dependent kinase 2 | 4310 | 0.025 | 0.3915 | No |
48 | ASCL3 | ASCL3 Entrez,  Source | achaete-scute complex (Drosophila) homolog-like 3 | 4333 | 0.025 | 0.3925 | No |
49 | ITPR3 | ITPR3 Entrez,  Source | inositol 1,4,5-triphosphate receptor, type 3 | 4344 | 0.025 | 0.3944 | No |
50 | PPARGC1B | PPARGC1B Entrez,  Source | peroxisome proliferative activated receptor, gamma, coactivator 1, beta | 4372 | 0.024 | 0.3949 | No |
51 | BLNK | BLNK Entrez,  Source | B-cell linker | 4539 | 0.022 | 0.3847 | No |
52 | PTHLH | PTHLH Entrez,  Source | parathyroid hormone-like hormone | 4594 | 0.021 | 0.3828 | No |
53 | RAB26 | RAB26 Entrez,  Source | RAB26, member RAS oncogene family | 4648 | 0.020 | 0.3810 | No |
54 | HPCAL4 | HPCAL4 Entrez,  Source | hippocalcin like 4 | 4868 | 0.017 | 0.3662 | No |
55 | PRRX1 | PRRX1 Entrez,  Source | paired related homeobox 1 | 5189 | 0.013 | 0.3434 | No |
56 | TSC1 | TSC1 Entrez,  Source | tuberous sclerosis 1 | 5410 | 0.010 | 0.3278 | No |
57 | SLC24A1 | SLC24A1 Entrez,  Source | solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 | 5423 | 0.009 | 0.3279 | No |
58 | RHOBTB2 | RHOBTB2 Entrez,  Source | Rho-related BTB domain containing 2 | 5450 | 0.009 | 0.3269 | No |
59 | MAP2K6 | MAP2K6 Entrez,  Source | mitogen-activated protein kinase kinase 6 | 5505 | 0.008 | 0.3237 | No |
60 | NFYB | NFYB Entrez,  Source | nuclear transcription factor Y, beta | 5521 | 0.008 | 0.3234 | No |
61 | NRXN1 | NRXN1 Entrez,  Source | neurexin 1 | 5683 | 0.006 | 0.3118 | No |
62 | TSGA14 | TSGA14 Entrez,  Source | testis specific, 14 | 5776 | 0.005 | 0.3054 | No |
63 | CSNK1E | CSNK1E Entrez,  Source | casein kinase 1, epsilon | 5823 | 0.004 | 0.3023 | No |
64 | COL23A1 | COL23A1 Entrez,  Source | collagen, type XXIII, alpha 1 | 5870 | 0.004 | 0.2993 | No |
65 | GAB2 | GAB2 Entrez,  Source | GRB2-associated binding protein 2 | 5899 | 0.003 | 0.2975 | No |
66 | BIN3 | BIN3 Entrez,  Source | bridging integrator 3 | 5959 | 0.003 | 0.2933 | No |
67 | KCNN3 | KCNN3 Entrez,  Source | potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 | 6008 | 0.002 | 0.2899 | No |
68 | NOTCH1 | NOTCH1 Entrez,  Source | Notch homolog 1, translocation-associated (Drosophila) | 6141 | 0.000 | 0.2799 | No |
69 | NRXN3 | NRXN3 Entrez,  Source | neurexin 3 | 6247 | -0.001 | 0.2722 | No |
70 | ESRRA | ESRRA Entrez,  Source | estrogen-related receptor alpha | 6415 | -0.003 | 0.2599 | No |
71 | JUND | JUND Entrez,  Source | jun D proto-oncogene | 6457 | -0.004 | 0.2572 | No |
72 | NRAS | NRAS Entrez,  Source | neuroblastoma RAS viral (v-ras) oncogene homolog | 6534 | -0.005 | 0.2520 | No |
73 | LRRN1 | LRRN1 Entrez,  Source | leucine rich repeat neuronal 1 | 6617 | -0.006 | 0.2464 | No |
74 | CXXC4 | CXXC4 Entrez,  Source | CXXC finger 4 | 6791 | -0.008 | 0.2342 | No |
75 | FGF14 | FGF14 Entrez,  Source | fibroblast growth factor 14 | 7024 | -0.011 | 0.2178 | No |
76 | CRYZL1 | CRYZL1 Entrez,  Source | crystallin, zeta (quinone reductase)-like 1 | 7045 | -0.011 | 0.2175 | No |
77 | ARHGAP4 | ARHGAP4 Entrez,  Source | Rho GTPase activating protein 4 | 7114 | -0.012 | 0.2136 | No |
78 | TMOD2 | TMOD2 Entrez,  Source | tropomodulin 2 (neuronal) | 7253 | -0.014 | 0.2046 | No |
79 | ADORA2A | ADORA2A Entrez,  Source | adenosine A2a receptor | 7525 | -0.017 | 0.1860 | No |
80 | EAF2 | EAF2 Entrez,  Source | ELL associated factor 2 | 7726 | -0.020 | 0.1729 | No |
81 | ALK | ALK Entrez,  Source | anaplastic lymphoma kinase (Ki-1) | 7874 | -0.022 | 0.1641 | No |
82 | THRA | THRA Entrez,  Source | thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) | 8105 | -0.025 | 0.1494 | No |
83 | MYBPC1 | MYBPC1 Entrez,  Source | myosin binding protein C, slow type | 8761 | -0.034 | 0.1035 | No |
84 | TCF2 | TCF2 Entrez,  Source | transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor | 8766 | -0.034 | 0.1068 | No |
85 | PAX6 | PAX6 Entrez,  Source | paired box gene 6 (aniridia, keratitis) | 8836 | -0.035 | 0.1054 | No |
86 | GPR4 | GPR4 Entrez,  Source | G protein-coupled receptor 4 | 8960 | -0.037 | 0.1000 | No |
87 | MID1 | MID1 Entrez,  Source | midline 1 (Opitz/BBB syndrome) | 9243 | -0.041 | 0.0830 | No |
88 | NXPH1 | NXPH1 Entrez,  Source | neurexophilin 1 | 9817 | -0.050 | 0.0450 | No |
89 | POU3F4 | POU3F4 Entrez,  Source | POU domain, class 3, transcription factor 4 | 9971 | -0.053 | 0.0391 | No |
90 | PDE4D | PDE4D Entrez,  Source | phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) | 10269 | -0.058 | 0.0227 | No |
91 | POU2F3 | POU2F3 Entrez,  Source | POU domain, class 2, transcription factor 3 | 10351 | -0.059 | 0.0229 | No |
92 | NDNL2 | NDNL2 Entrez,  Source | necdin-like 2 | 10563 | -0.063 | 0.0137 | No |
93 | CD86 | CD86 Entrez,  Source | CD86 molecule | 10637 | -0.065 | 0.0150 | No |
94 | PTEN | PTEN Entrez,  Source | phosphatase and tensin homolog (mutated in multiple advanced cancers 1) | 10692 | -0.066 | 0.0179 | No |
95 | PCYT1B | PCYT1B Entrez,  Source | phosphate cytidylyltransferase 1, choline, beta | 10932 | -0.072 | 0.0074 | No |
96 | CRISP1 | CRISP1 Entrez,  Source | cysteine-rich secretory protein 1 | 11196 | -0.078 | -0.0042 | No |
97 | ACBD4 | ACBD4 Entrez,  Source | acyl-Coenzyme A binding domain containing 4 | 11202 | -0.078 | 0.0037 | No |
98 | SYNPR | SYNPR Entrez,  Source | synaptoporin | 11391 | -0.084 | -0.0017 | No |
99 | IFIT2 | IFIT2 Entrez,  Source | interferon-induced protein with tetratricopeptide repeats 2 | 11566 | -0.088 | -0.0055 | No |
100 | ITSN1 | ITSN1 Entrez,  Source | intersectin 1 (SH3 domain protein) | 11645 | -0.090 | -0.0019 | No |
101 | CD79B | CD79B Entrez,  Source | CD79b molecule, immunoglobulin-associated beta | 11950 | -0.101 | -0.0142 | No |
102 | BAT2 | BAT2 Entrez,  Source | HLA-B associated transcript 2 | 12105 | -0.107 | -0.0145 | No |
103 | LYN | LYN Entrez,  Source | v-yes-1 Yamaguchi sarcoma viral related oncogene homolog | 12283 | -0.115 | -0.0157 | No |
104 | ABTB2 | ABTB2 Entrez,  Source | ankyrin repeat and BTB (POZ) domain containing 2 | 12516 | -0.129 | -0.0195 | No |
105 | TCF12 | TCF12 Entrez,  Source | transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) | 12682 | -0.140 | -0.0172 | No |
106 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 12922 | -0.168 | -0.0175 | No |
107 | SH3GL3 | SH3GL3 Entrez,  Source | SH3-domain GRB2-like 3 | 13033 | -0.194 | -0.0054 | No |
108 | TCEAL1 | TCEAL1 Entrez,  Source | transcription elongation factor A (SII)-like 1 | 13220 | -0.271 | 0.0092 | No |