Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in class	double_gel_8d
GeneSet	V$SRF_Q4
Enrichment Score (ES)	0.5481438
Normalized Enrichment Score (NES)	2.023875
Nominal p-value	0.0
FDR q-value	0.0041765375
FWER p-Value	0.138

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CTGF	CTGF Entrez, Source	connective tissue growth factor	32	0.660	0.0518	Yes
2	RAB30	RAB30 Entrez, Source	RAB30, member RAS oncogene family	55	0.564	0.0964	Yes
3	SLC25A4	SLC25A4 Entrez, Source	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	56	0.562	0.1425	Yes
4	EDN1	EDN1 Entrez, Source	endothelin 1	113	0.410	0.1719	Yes
5	EGR2	EGR2 Entrez, Source	early growth response 2 (Krox-20 homolog, Drosophila)	130	0.390	0.2028	Yes
6	FST	FST Entrez, Source	follistatin	132	0.388	0.2346	Yes
7	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	142	0.371	0.2643	Yes
8	CITED2	CITED2 Entrez, Source	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	145	0.367	0.2943	Yes
9	FOXP1	FOXP1 Entrez, Source	forkhead box P1	174	0.343	0.3204	Yes
10	SERPINH1	SERPINH1 Entrez, Source	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	181	0.336	0.3475	Yes
11	PPP2R3A	PPP2R3A Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha	222	0.305	0.3695	Yes
12	TAGLN	TAGLN Entrez, Source	transgelin	253	0.280	0.3902	Yes
13	SGK	SGK Entrez, Source	serum/glucocorticoid regulated kinase	330	0.237	0.4039	Yes
14	TMOD1	TMOD1 Entrez, Source	tropomodulin 1	370	0.220	0.4190	Yes
15	CX3CL1	CX3CL1 Entrez, Source	chemokine (C-X3-C motif) ligand 1	375	0.218	0.4366	Yes
16	ACTG2	ACTG2 Entrez, Source	actin, gamma 2, smooth muscle, enteric	391	0.212	0.4528	Yes
17	CRH	CRH Entrez, Source	corticotropin releasing hormone	541	0.173	0.4558	Yes
18	DUSP5	DUSP5 Entrez, Source	dual specificity phosphatase 5	553	0.172	0.4691	Yes
19	TGIF	TGIF Entrez, Source	TGFB-induced factor (TALE family homeobox)	618	0.162	0.4776	Yes
20	NR2F2	NR2F2 Entrez, Source	nuclear receptor subfamily 2, group F, member 2	806	0.139	0.4749	Yes
21	SDPR	SDPR Entrez, Source	serum deprivation response (phosphatidylserine binding protein)	851	0.134	0.4826	Yes
22	JUNB	JUNB Entrez, Source	jun B proto-oncogene	866	0.132	0.4924	Yes
23	TGFB1I1	TGFB1I1 Entrez, Source	transforming growth factor beta 1 induced transcript 1	919	0.127	0.4989	Yes
24	CALD1	CALD1 Entrez, Source	caldesmon 1	920	0.127	0.5093	Yes
25	NR4A1	NR4A1 Entrez, Source	nuclear receptor subfamily 4, group A, member 1	1192	0.110	0.4979	Yes
26	DUSP2	DUSP2 Entrez, Source	dual specificity phosphatase 2	1208	0.109	0.5057	Yes
27	NR2F1	NR2F1 Entrez, Source	nuclear receptor subfamily 2, group F, member 1	1234	0.108	0.5127	Yes
28	ACTN1	ACTN1 Entrez, Source	actinin, alpha 1	1268	0.106	0.5188	Yes
29	IER2	IER2 Entrez, Source	immediate early response 2	1295	0.104	0.5255	Yes
30	MYO1B	MYO1B Entrez, Source	myosin IB	1311	0.104	0.5328	Yes
31	MMP14	MMP14 Entrez, Source	matrix metallopeptidase 14 (membrane-inserted)	1312	0.104	0.5413	Yes
32	TNNC1	TNNC1 Entrez, Source	troponin C type 1 (slow)	1426	0.097	0.5407	Yes
33	PPP1R12A	PPP1R12A Entrez, Source	protein phosphatase 1, regulatory (inhibitor) subunit 12A	1434	0.097	0.5481	Yes
34	ATRX	ATRX Entrez, Source	alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)	1606	0.089	0.5425	No
35	CDKN1B	CDKN1B Entrez, Source	cyclin-dependent kinase inhibitor 1B (p27, Kip1)	1676	0.086	0.5443	No
36	ROCK2	ROCK2 Entrez, Source	Rho-associated, coiled-coil containing protein kinase 2	1731	0.083	0.5471	No
37	MYO1E	MYO1E Entrez, Source	myosin IE	1942	0.075	0.5374	No
38	RIMS1	RIMS1 Entrez, Source	regulating synaptic membrane exocytosis 1	2010	0.073	0.5383	No
39	TNMD	TNMD Entrez, Source	tenomodulin	2413	0.062	0.5130	No
40	SORT1	SORT1 Entrez, Source	sortilin 1	2504	0.060	0.5110	No
41	ANXA6	ANXA6 Entrez, Source	annexin A6	2949	0.050	0.4816	No
42	MAPKAPK2	MAPKAPK2 Entrez, Source	mitogen-activated protein kinase-activated protein kinase 2	3045	0.048	0.4783	No
43	PPAP2B	PPAP2B Entrez, Source	phosphatidic acid phosphatase type 2B	3267	0.043	0.4651	No
44	EGR1	EGR1 Entrez, Source	early growth response 1	3274	0.043	0.4682	No
45	EGR4	EGR4 Entrez, Source	early growth response 4	3289	0.043	0.4707	No
46	GPR20	GPR20 Entrez, Source	G protein-coupled receptor 20	3344	0.042	0.4700	No
47	KCNJ13	KCNJ13 Entrez, Source	potassium inwardly-rectifying channel, subfamily J, member 13	3652	0.036	0.4497	No
48	KCNA1	KCNA1 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	3681	0.036	0.4505	No
49	RBBP7	RBBP7 Entrez, Source	retinoblastoma binding protein 7	3793	0.034	0.4449	No
50	IL17B	IL17B Entrez, Source	interleukin 17B	3926	0.031	0.4375	No
51	CACNA1B	CACNA1B Entrez, Source	calcium channel, voltage-dependent, L type, alpha 1B subunit	4086	0.029	0.4279	No
52	EGR3	EGR3 Entrez, Source	early growth response 3	4101	0.029	0.4292	No
53	NPPA	NPPA Entrez, Source	natriuretic peptide precursor A	4177	0.028	0.4257	No
54	DUSP6	DUSP6 Entrez, Source	dual specificity phosphatase 6	4288	0.026	0.4195	No
55	NLGN3	NLGN3 Entrez, Source	neuroligin 3	4303	0.025	0.4206	No
56	MCL1	MCL1 Entrez, Source	myeloid cell leukemia sequence 1 (BCL2-related)	4307	0.025	0.4224	No
57	MSX1	MSX1 Entrez, Source	msh homeobox homolog 1 (Drosophila)	4536	0.022	0.4070	No
58	ACTB	ACTB Entrez, Source	actin, beta	4714	0.019	0.3952	No
59	MYH11	MYH11 Entrez, Source	myosin, heavy chain 11, smooth muscle	4899	0.017	0.3826	No
60	DSTN	DSTN Entrez, Source	destrin (actin depolymerizing factor)	5007	0.015	0.3758	No
61	NCOA6	NCOA6 Entrez, Source	nuclear receptor coactivator 6	5196	0.013	0.3626	No
62	IHPK1	IHPK1 Entrez, Source	inositol hexaphosphate kinase 1	5396	0.010	0.3484	No
63	DLL1	DLL1 Entrez, Source	delta-like 1 (Drosophila)	5403	0.010	0.3487	No
64	ACTA1	ACTA1 Entrez, Source	actin, alpha 1, skeletal muscle	5464	0.009	0.3449	No
65	MAP2K6	MAP2K6 Entrez, Source	mitogen-activated protein kinase kinase 6	5505	0.008	0.3426	No
66	PADI2	PADI2 Entrez, Source	peptidyl arginine deiminase, type II	5592	0.007	0.3366	No
67	MAP1A	MAP1A Entrez, Source	microtubule-associated protein 1A	5715	0.005	0.3279	No
68	FOXE3	FOXE3 Entrez, Source	forkhead box E3	5746	0.005	0.3260	No
69	COL23A1	COL23A1 Entrez, Source	collagen, type XXIII, alpha 1	5870	0.004	0.3170	No
70	GAB2	GAB2 Entrez, Source	GRB2-associated binding protein 2	5899	0.003	0.3152	No
71	PLCB3	PLCB3 Entrez, Source	phospholipase C, beta 3 (phosphatidylinositol-specific)	5900	0.003	0.3155	No
72	RASD2	RASD2 Entrez, Source	RASD family, member 2	5901	0.003	0.3157	No
73	TPM1	TPM1 Entrez, Source	tropomyosin 1 (alpha)	5926	0.003	0.3142	No
74	DGKG	DGKG Entrez, Source	diacylglycerol kinase, gamma 90kDa	5934	0.003	0.3139	No
75	FGFRL1	FGFRL1 Entrez, Source	fibroblast growth factor receptor-like 1	6158	-0.000	0.2970	No
76	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	6362	-0.003	0.2819	No
77	KCNK3	KCNK3 Entrez, Source	potassium channel, subfamily K, member 3	6369	-0.003	0.2817	No
78	ESRRA	ESRRA Entrez, Source	estrogen-related receptor alpha	6415	-0.003	0.2785	No
79	HOXA5	HOXA5 Entrez, Source	homeobox A5	6663	-0.007	0.2604	No
80	JPH2	JPH2 Entrez, Source	junctophilin 2	6878	-0.009	0.2450	No
81	VGF	VGF Entrez, Source	VGF nerve growth factor inducible	6937	-0.010	0.2414	No
82	TPM3	TPM3 Entrez, Source	tropomyosin 3	6977	-0.010	0.2393	No
83	GRK6	GRK6 Entrez, Source	G protein-coupled receptor kinase 6	7131	-0.012	0.2287	No
84	CFL1	CFL1 Entrez, Source	cofilin 1 (non-muscle)	7218	-0.013	0.2233	No
85	PFN1	PFN1 Entrez, Source	profilin 1	7229	-0.013	0.2237	No
86	AKAP12	AKAP12 Entrez, Source	A kinase (PRKA) anchor protein (gravin) 12	7409	-0.015	0.2114	No
87	ASPA	ASPA Entrez, Source	aspartoacylase (Canavan disease)	7439	-0.016	0.2105	No
88	MBNL1	MBNL1 Entrez, Source	muscleblind-like (Drosophila)	8090	-0.025	0.1634	No
89	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	8240	-0.027	0.1544	No
90	PPARG	PPARG Entrez, Source	peroxisome proliferative activated receptor, gamma	8513	-0.031	0.1364	No
91	H2AFX	H2AFX Entrez, Source	H2A histone family, member X	8894	-0.036	0.1106	No
92	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	9039	-0.038	0.1028	No
93	RERE	RERE Entrez, Source	arginine-glutamic acid dipeptide (RE) repeats	9139	-0.039	0.0986	No
94	CNN1	CNN1 Entrez, Source	calponin 1, basic, smooth muscle	9196	-0.040	0.0976	No
95	MID1	MID1 Entrez, Source	midline 1 (Opitz/BBB syndrome)	9243	-0.041	0.0975	No
96	SLC4A3	SLC4A3 Entrez, Source	solute carrier family 4, anion exchanger, member 3	9347	-0.042	0.0932	No
97	SRP54	SRP54 Entrez, Source	signal recognition particle 54kDa	9555	-0.046	0.0813	No
98	POU3F4	POU3F4 Entrez, Source	POU domain, class 3, transcription factor 4	9971	-0.053	0.0543	No
99	TAF5L	TAF5L Entrez, Source	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	10163	-0.056	0.0445	No
100	CKM	CKM Entrez, Source	creatine kinase, muscle	10448	-0.061	0.0280	No
101	DDX17	DDX17 Entrez, Source	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	10688	-0.066	0.0154	No
102	KCNMB1	KCNMB1 Entrez, Source	potassium large conductance calcium-activated channel, subfamily M, beta member 1	10764	-0.068	0.0153	No
103	FGF8	FGF8 Entrez, Source	fibroblast growth factor 8 (androgen-induced)	10881	-0.070	0.0123	No
104	CSDA	CSDA Entrez, Source	cold shock domain protein A	11295	-0.081	-0.0123	No
105	SND1	SND1 Entrez, Source	-	11565	-0.088	-0.0254	No
106	NPR3	NPR3 Entrez, Source	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	11674	-0.091	-0.0261	No
107	MUS81	MUS81 Entrez, Source	MUS81 endonuclease homolog (S. cerevisiae)	11829	-0.097	-0.0298	No
108	MAPK14	MAPK14 Entrez, Source	mitogen-activated protein kinase 14	12051	-0.105	-0.0379	No
109	PHF12	PHF12 Entrez, Source	PHD finger protein 12	12208	-0.112	-0.0405	No
110	FGF17	FGF17 Entrez, Source	fibroblast growth factor 17	12498	-0.128	-0.0519	No
111	CSRP1	CSRP1 Entrez, Source	cysteine and glycine-rich protein 1	12583	-0.134	-0.0472	No
112	DIXDC1	DIXDC1 Entrez, Source	DIX domain containing 1	12665	-0.138	-0.0420	No
113	RARB	RARB Entrez, Source	retinoic acid receptor, beta	12717	-0.143	-0.0341	No
114	SRD5A2	SRD5A2 Entrez, Source	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	12820	-0.155	-0.0291	No
115	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	12922	-0.168	-0.0230	No
116	STAT5B	STAT5B Entrez, Source	signal transducer and activator of transcription 5B	13204	-0.257	-0.0231	No
117	GADD45G	GADD45G Entrez, Source	growth arrest and DNA-damage-inducible, gamma	13302	-0.408	0.0030	No