Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_double_gel_72h.class.cls #double_gel_8d_versus_double_gel_72h_repos
Phenotype	class.cls#double_gel_8d_versus_double_gel_72h_repos
Upregulated in class	double_gel_8d
GeneSet	V$SRF_Q6
Enrichment Score (ES)	0.46966207
Normalized Enrichment Score (NES)	1.7532916
Nominal p-value	0.0016366612
FDR q-value	0.039746806
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COL1A2	COL1A2 Entrez, Source	collagen, type I, alpha 2	3	1.046	0.0860	Yes
2	SLC25A4	SLC25A4 Entrez, Source	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	56	0.562	0.1283	Yes
3	PRELP	PRELP Entrez, Source	proline/arginine-rich end leucine-rich repeat protein	119	0.401	0.1567	Yes
4	EGR2	EGR2 Entrez, Source	early growth response 2 (Krox-20 homolog, Drosophila)	130	0.390	0.1881	Yes
5	FST	FST Entrez, Source	follistatin	132	0.388	0.2200	Yes
6	FOS	FOS Entrez, Source	v-fos FBJ murine osteosarcoma viral oncogene homolog	142	0.371	0.2499	Yes
7	CITED2	CITED2 Entrez, Source	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	145	0.367	0.2799	Yes
8	FOXP1	FOXP1 Entrez, Source	forkhead box P1	174	0.343	0.3061	Yes
9	PPP2R3A	PPP2R3A Entrez, Source	protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha	222	0.305	0.3277	Yes
10	TAGLN	TAGLN Entrez, Source	transgelin	253	0.280	0.3485	Yes
11	CX3CL1	CX3CL1 Entrez, Source	chemokine (C-X3-C motif) ligand 1	375	0.218	0.3572	Yes
12	ACTG2	ACTG2 Entrez, Source	actin, gamma 2, smooth muscle, enteric	391	0.212	0.3736	Yes
13	ACAA2	ACAA2 Entrez, Source	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	528	0.177	0.3779	Yes
14	DUSP5	DUSP5 Entrez, Source	dual specificity phosphatase 5	553	0.172	0.3902	Yes
15	COL1A1	COL1A1 Entrez, Source	collagen, type I, alpha 1	738	0.146	0.3883	Yes
16	MYADM	MYADM Entrez, Source	myeloid-associated differentiation marker	740	0.146	0.4002	Yes
17	NR2F2	NR2F2 Entrez, Source	nuclear receptor subfamily 2, group F, member 2	806	0.139	0.4068	Yes
18	SDPR	SDPR Entrez, Source	serum deprivation response (phosphatidylserine binding protein)	851	0.134	0.4145	Yes
19	JUNB	JUNB Entrez, Source	jun B proto-oncogene	866	0.132	0.4244	Yes
20	TGFB1I1	TGFB1I1 Entrez, Source	transforming growth factor beta 1 induced transcript 1	919	0.127	0.4309	Yes
21	CALD1	CALD1 Entrez, Source	caldesmon 1	920	0.127	0.4414	Yes
22	NR4A1	NR4A1 Entrez, Source	nuclear receptor subfamily 4, group A, member 1	1192	0.110	0.4299	Yes
23	DUSP2	DUSP2 Entrez, Source	dual specificity phosphatase 2	1208	0.109	0.4378	Yes
24	NR2F1	NR2F1 Entrez, Source	nuclear receptor subfamily 2, group F, member 1	1234	0.108	0.4448	Yes
25	BDNF	BDNF Entrez, Source	brain-derived neurotrophic factor	1267	0.106	0.4511	Yes
26	ACTN1	ACTN1 Entrez, Source	actinin, alpha 1	1268	0.106	0.4598	Yes
27	TNNC1	TNNC1 Entrez, Source	troponin C type 1 (slow)	1426	0.097	0.4559	Yes
28	PPP1R12A	PPP1R12A Entrez, Source	protein phosphatase 1, regulatory (inhibitor) subunit 12A	1434	0.097	0.4633	Yes
29	AQP2	AQP2 Entrez, Source	aquaporin 2 (collecting duct)	1456	0.096	0.4697	Yes
30	CDKN1B	CDKN1B Entrez, Source	cyclin-dependent kinase inhibitor 1B (p27, Kip1)	1676	0.086	0.4602	No
31	ROCK2	ROCK2 Entrez, Source	Rho-associated, coiled-coil containing protein kinase 2	1731	0.083	0.4629	No
32	MYO1E	MYO1E Entrez, Source	myosin IE	1942	0.075	0.4532	No
33	RIMS1	RIMS1 Entrez, Source	regulating synaptic membrane exocytosis 1	2010	0.073	0.4542	No
34	NKX6-1	NKX6-1 Entrez, Source	NK6 transcription factor related, locus 1 (Drosophila)	2024	0.072	0.4591	No
35	TRDN	TRDN Entrez, Source	triadin	2077	0.071	0.4610	No
36	TITF1	TITF1 Entrez, Source	thyroid transcription factor 1	2354	0.063	0.4453	No
37	TNMD	TNMD Entrez, Source	tenomodulin	2413	0.062	0.4460	No
38	GNG8	GNG8 Entrez, Source	guanine nucleotide binding protein (G protein), gamma 8	2836	0.052	0.4184	No
39	ANXA6	ANXA6 Entrez, Source	annexin A6	2949	0.050	0.4140	No
40	TES	TES Entrez, Source	testis derived transcript (3 LIM domains)	3036	0.048	0.4114	No
41	MAPKAPK2	MAPKAPK2 Entrez, Source	mitogen-activated protein kinase-activated protein kinase 2	3045	0.048	0.4148	No
42	PPAP2B	PPAP2B Entrez, Source	phosphatidic acid phosphatase type 2B	3267	0.043	0.4016	No
43	EGR1	EGR1 Entrez, Source	early growth response 1	3274	0.043	0.4047	No
44	GPR20	GPR20 Entrez, Source	G protein-coupled receptor 20	3344	0.042	0.4029	No
45	DHH	DHH Entrez, Source	desert hedgehog homolog (Drosophila)	3533	0.038	0.3918	No
46	KCNA1	KCNA1 Entrez, Source	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	3681	0.036	0.3836	No
47	RBBP7	RBBP7 Entrez, Source	retinoblastoma binding protein 7	3793	0.034	0.3780	No
48	LDHA	LDHA Entrez, Source	lactate dehydrogenase A	3915	0.032	0.3714	No
49	IL17B	IL17B Entrez, Source	interleukin 17B	3926	0.031	0.3733	No
50	NFATC4	NFATC4 Entrez, Source	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	4051	0.029	0.3663	No
51	CACNA1B	CACNA1B Entrez, Source	calcium channel, voltage-dependent, L type, alpha 1B subunit	4086	0.029	0.3661	No
52	EGR3	EGR3 Entrez, Source	early growth response 3	4101	0.029	0.3674	No
53	NPPA	NPPA Entrez, Source	natriuretic peptide precursor A	4177	0.028	0.3640	No
54	MSX1	MSX1 Entrez, Source	msh homeobox homolog 1 (Drosophila)	4536	0.022	0.3388	No
55	ATF4	ATF4 Entrez, Source	activating transcription factor 4 (tax-responsive enhancer element B67)	4662	0.020	0.3310	No
56	ACTB	ACTB Entrez, Source	actin, beta	4714	0.019	0.3287	No
57	CNTF	CNTF Entrez, Source	ciliary neurotrophic factor	4782	0.018	0.3252	No
58	MYH11	MYH11 Entrez, Source	myosin, heavy chain 11, smooth muscle	4899	0.017	0.3178	No
59	SCN3B	SCN3B Entrez, Source	sodium channel, voltage-gated, type III, beta	5097	0.014	0.3040	No
60	LSP1	LSP1 Entrez, Source	lymphocyte-specific protein 1	5115	0.014	0.3039	No
61	ACTA1	ACTA1 Entrez, Source	actin, alpha 1, skeletal muscle	5464	0.009	0.2783	No
62	MAP2K6	MAP2K6 Entrez, Source	mitogen-activated protein kinase kinase 6	5505	0.008	0.2759	No
63	PADI2	PADI2 Entrez, Source	peptidyl arginine deiminase, type II	5592	0.007	0.2700	No
64	RAB27A	RAB27A Entrez, Source	RAB27A, member RAS oncogene family	5665	0.006	0.2650	No
65	MAP1A	MAP1A Entrez, Source	microtubule-associated protein 1A	5715	0.005	0.2618	No
66	FOXE3	FOXE3 Entrez, Source	forkhead box E3	5746	0.005	0.2600	No
67	CSNK1E	CSNK1E Entrez, Source	casein kinase 1, epsilon	5823	0.004	0.2545	No
68	PLCB3	PLCB3 Entrez, Source	phospholipase C, beta 3 (phosphatidylinositol-specific)	5900	0.003	0.2491	No
69	RASD2	RASD2 Entrez, Source	RASD family, member 2	5901	0.003	0.2494	No
70	DGKG	DGKG Entrez, Source	diacylglycerol kinase, gamma 90kDa	5934	0.003	0.2472	No
71	NNAT	NNAT Entrez, Source	neuronatin	6122	0.000	0.2331	No
72	FGFRL1	FGFRL1 Entrez, Source	fibroblast growth factor receptor-like 1	6158	-0.000	0.2304	No
73	MRGPRF	MRGPRF Entrez, Source	MAS-related GPR, member F	6362	-0.003	0.2153	No
74	KCNK3	KCNK3 Entrez, Source	potassium channel, subfamily K, member 3	6369	-0.003	0.2150	No
75	PICALM	PICALM Entrez, Source	phosphatidylinositol binding clathrin assembly protein	6529	-0.005	0.2034	No
76	PDLIM3	PDLIM3 Entrez, Source	PDZ and LIM domain 3	6654	-0.006	0.1945	No
77	HOXA5	HOXA5 Entrez, Source	homeobox A5	6663	-0.007	0.1945	No
78	JPH2	JPH2 Entrez, Source	junctophilin 2	6878	-0.009	0.1790	No
79	TPM3	TPM3 Entrez, Source	tropomyosin 3	6977	-0.010	0.1725	No
80	RAP1A	RAP1A Entrez, Source	RAP1A, member of RAS oncogene family	7119	-0.012	0.1628	No
81	GRK6	GRK6 Entrez, Source	G protein-coupled receptor kinase 6	7131	-0.012	0.1630	No
82	CFL1	CFL1 Entrez, Source	cofilin 1 (non-muscle)	7218	-0.013	0.1576	No
83	PFN1	PFN1 Entrez, Source	profilin 1	7229	-0.013	0.1579	No
84	CTDSP1	CTDSP1 Entrez, Source	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	7334	-0.015	0.1513	No
85	TCF8	TCF8 Entrez, Source	transcription factor 8 (represses interleukin 2 expression)	8084	-0.025	0.0966	No
86	MBNL1	MBNL1 Entrez, Source	muscleblind-like (Drosophila)	8090	-0.025	0.0983	No
87	RHOJ	RHOJ Entrez, Source	ras homolog gene family, member J	8240	-0.027	0.0893	No
88	FOSL1	FOSL1 Entrez, Source	FOS-like antigen 1	8279	-0.028	0.0887	No
89	PPARG	PPARG Entrez, Source	peroxisome proliferative activated receptor, gamma	8513	-0.031	0.0736	No
90	UBE2D3	UBE2D3 Entrez, Source	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	8858	-0.036	0.0505	No
91	H2AFX	H2AFX Entrez, Source	H2A histone family, member X	8894	-0.036	0.0508	No
92	TLE3	TLE3 Entrez, Source	transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	9039	-0.038	0.0431	No
93	RERE	RERE Entrez, Source	arginine-glutamic acid dipeptide (RE) repeats	9139	-0.039	0.0388	No
94	CNN1	CNN1 Entrez, Source	calponin 1, basic, smooth muscle	9196	-0.040	0.0379	No
95	SLC4A3	SLC4A3 Entrez, Source	solute carrier family 4, anion exchanger, member 3	9347	-0.042	0.0301	No
96	ITGA7	ITGA7 Entrez, Source	integrin, alpha 7	9373	-0.043	0.0317	No
97	ATP1A2	ATP1A2 Entrez, Source	ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide	9475	-0.045	0.0277	No
98	ACTR3	ACTR3 Entrez, Source	ARP3 actin-related protein 3 homolog (yeast)	9733	-0.049	0.0123	No
99	MATR3	MATR3 Entrez, Source	matrin 3	9874	-0.051	0.0060	No
100	POU3F4	POU3F4 Entrez, Source	POU domain, class 3, transcription factor 4	9971	-0.053	0.0031	No
101	PDLIM4	PDLIM4 Entrez, Source	PDZ and LIM domain 4	10146	-0.056	-0.0055	No
102	IGF1	IGF1 Entrez, Source	insulin-like growth factor 1 (somatomedin C)	10373	-0.060	-0.0176	No
103	HOXA1	HOXA1 Entrez, Source	homeobox A1	10402	-0.060	-0.0148	No
104	SYNCRIP	SYNCRIP Entrez, Source	synaptotagmin binding, cytoplasmic RNA interacting protein	10434	-0.061	-0.0121	No
105	CKM	CKM Entrez, Source	creatine kinase, muscle	10448	-0.061	-0.0081	No
106	WNT5A	WNT5A Entrez, Source	wingless-type MMTV integration site family, member 5A	10507	-0.062	-0.0073	No
107	PRKAB2	PRKAB2 Entrez, Source	protein kinase, AMP-activated, beta 2 non-catalytic subunit	10625	-0.065	-0.0108	No
108	PLN	PLN Entrez, Source	phospholamban	10671	-0.066	-0.0088	No
109	KCNMB1	KCNMB1 Entrez, Source	potassium large conductance calcium-activated channel, subfamily M, beta member 1	10764	-0.068	-0.0102	No
110	FGF8	FGF8 Entrez, Source	fibroblast growth factor 8 (androgen-induced)	10881	-0.070	-0.0132	No
111	PDLIM7	PDLIM7 Entrez, Source	PDZ and LIM domain 7 (enigma)	11377	-0.083	-0.0438	No
112	EPHB1	EPHB1 Entrez, Source	EPH receptor B1	11671	-0.091	-0.0585	No
113	NPR3	NPR3 Entrez, Source	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	11674	-0.091	-0.0511	No
114	MUS81	MUS81 Entrez, Source	MUS81 endonuclease homolog (S. cerevisiae)	11829	-0.097	-0.0548	No
115	PHF12	PHF12 Entrez, Source	PHD finger protein 12	12208	-0.112	-0.0742	No
116	SIPA1	SIPA1 Entrez, Source	signal-induced proliferation-associated gene 1	12263	-0.115	-0.0688	No
117	CABP1	CABP1 Entrez, Source	calcium binding protein 1 (calbrain)	12456	-0.124	-0.0732	No
118	DIXDC1	DIXDC1 Entrez, Source	DIX domain containing 1	12665	-0.138	-0.0775	No
119	RARB	RARB Entrez, Source	retinoic acid receptor, beta	12717	-0.143	-0.0696	No
120	SRD5A2	SRD5A2 Entrez, Source	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	12820	-0.155	-0.0645	No
121	DMD	DMD Entrez, Source	dystrophin (muscular dystrophy, Duchenne and Becker types)	12922	-0.168	-0.0584	No
122	SLC7A1	SLC7A1 Entrez, Source	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	13051	-0.198	-0.0518	No
123	KIF1B	KIF1B Entrez, Source	kinesin family member 1B	13158	-0.228	-0.0410	No
124	STAT5B	STAT5B Entrez, Source	signal transducer and activator of transcription 5B	13204	-0.257	-0.0233	No
125	GADD45G	GADD45G Entrez, Source	growth arrest and DNA-damage-inducible, gamma	13302	-0.408	0.0030	No