Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_single_gel_8d.class.cls
#double_gel_8d_versus_single_gel_8d_repos
Phenotypeclass.cls#double_gel_8d_versus_single_gel_8d_repos
Upregulated in classdouble_gel_8d
GeneSetCARBOXYLIC_ACID_METABOLIC_PROCESS
Enrichment Score (ES)0.6789023
Normalized Enrichment Score (NES)2.6026647
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: CARBOXYLIC_ACID_METABOLIC_PROCESS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1FTCDFTCD
Entrez,  Source
formiminotransferase cyclodeaminase91.1710.0363Yes
2GLYATGLYAT
Entrez,  Source
glycine-N-acyltransferase101.1210.0718Yes
3BBOX1BBOX1
Entrez,  Source
butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1160.9330.1009Yes
4HGDHGD
Entrez,  Source
homogentisate 1,2-dioxygenase (homogentisate oxidase)170.9300.1303Yes
5MAT1AMAT1A
Entrez,  Source
methionine adenosyltransferase I, alpha350.8150.1548Yes
6GOT1GOT1
Entrez,  Source
glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)560.7310.1763Yes
7ACOX2ACOX2
Entrez,  Source
acyl-Coenzyme A oxidase 2, branched chain600.7210.1989Yes
8PFKFB1PFKFB1
Entrez,  Source
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1950.6210.2160Yes
9FADS2FADS2
Entrez,  Source
fatty acid desaturase 2980.6170.2353Yes
10CDO1CDO1
Entrez,  Source
cysteine dioxygenase, type I1040.6120.2543Yes
11AGXTAGXT
Entrez,  Source
alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase)1080.6060.2732Yes
12SLC25A15SLC25A15
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 151130.5970.2917Yes
13ASLASL
Entrez,  Source
argininosuccinate lyase1220.5860.3097Yes
14MSRAMSRA
Entrez,  Source
methionine sulfoxide reductase A1350.5560.3263Yes
15HACL1HACL1
Entrez,  Source
2-hydroxyacyl-CoA lyase 11770.4960.3389Yes
16ACLYACLY
Entrez,  Source
ATP citrate lyase1860.4870.3537Yes
17AS3MTAS3MT
Entrez,  Source
arsenic (+3 oxidation state) methyltransferase2010.4720.3676Yes
18ACOT12ACOT12
Entrez,  Source
acyl-CoA thioesterase 122120.4610.3814Yes
19SLC7A2SLC7A2
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 22230.4560.3950Yes
20ACOT2ACOT2
Entrez,  Source
acyl-CoA thioesterase 22310.4500.4087Yes
21IGF1IGF1
Entrez,  Source
insulin-like growth factor 1 (somatomedin C)2360.4450.4225Yes
22ARG1ARG1
Entrez,  Source
arginase, liver2460.4380.4357Yes
23ACN9ACN9
Entrez,  Source
ACN9 homolog (S. cerevisiae)2470.4380.4495Yes
24GCKGCK
Entrez,  Source
glucokinase (hexokinase 4, maturity onset diabetes of the young 2)2590.4270.4622Yes
25ECHS1ECHS1
Entrez,  Source
enoyl Coenzyme A hydratase, short chain, 1, mitochondrial2600.4270.4757Yes
26BCKDHBBCKDHB
Entrez,  Source
branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease)2710.4190.4882Yes
27FAHFAH
Entrez,  Source
fumarylacetoacetate hydrolase (fumarylacetoacetase)2770.4160.5010Yes
28SC4MOLSC4MOL
Entrez,  Source
sterol-C4-methyl oxidase-like2840.4090.5134Yes
29GLS2GLS2
Entrez,  Source
glutaminase 2 (liver, mitochondrial)2910.4030.5257Yes
30BCKDHABCKDHA
Entrez,  Source
branched chain keto acid dehydrogenase E1, alpha polypeptide3890.3440.5293Yes
31SLC27A5SLC27A5
Entrez,  Source
solute carrier family 27 (fatty acid transporter), member 53920.3410.5399Yes
32FADS1FADS1
Entrez,  Source
fatty acid desaturase 14010.3380.5500Yes
33CYP4F2CYP4F2
Entrez,  Source
cytochrome P450, family 4, subfamily F, polypeptide 24030.3370.5606Yes
34PAHPAH
Entrez,  Source
phenylalanine hydroxylase4110.3360.5706Yes
35FAAHFAAH
Entrez,  Source
fatty acid amide hydrolase5010.2990.5734Yes
36ALDH6A1ALDH6A1
Entrez,  Source
aldehyde dehydrogenase 6 family, member A15240.2920.5809Yes
37ACADVLACADVL
Entrez,  Source
acyl-Coenzyme A dehydrogenase, very long chain5370.2880.5891Yes
38NR1H4NR1H4
Entrez,  Source
nuclear receptor subfamily 1, group H, member 45430.2850.5978Yes
39BAATBAAT
Entrez,  Source
bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)5800.2730.6037Yes
40MLYCDMLYCD
Entrez,  Source
malonyl-CoA decarboxylase5840.2710.6120Yes
41ADI1ADI1
Entrez,  Source
acireductone dioxygenase 16230.2600.6174Yes
42SLC25A10SLC25A10
Entrez,  Source
solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 106420.2550.6241Yes
43AKR1D1AKR1D1
Entrez,  Source
aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)6560.2510.6310Yes
44PPARAPPARA
Entrez,  Source
peroxisome proliferative activated receptor, alpha7320.2310.6327Yes
45ALDH1L1ALDH1L1
Entrez,  Source
aldehyde dehydrogenase 1 family, member L17500.2280.6386Yes
46GAMTGAMT
Entrez,  Source
guanidinoacetate N-methyltransferase7530.2270.6456Yes
47ALDH5A1ALDH5A1
Entrez,  Source
aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase)8700.2110.6435Yes
48CPT1ACPT1A
Entrez,  Source
carnitine palmitoyltransferase 1A (liver)9500.2000.6438Yes
49ASPAASPA
Entrez,  Source
aspartoacylase (Canavan disease)10270.1890.6441Yes
50GCSHGCSH
Entrez,  Source
glycine cleavage system protein H (aminomethyl carrier)10460.1870.6486Yes
51ACADSBACADSB
Entrez,  Source
acyl-Coenzyme A dehydrogenase, short/branched chain11580.1750.6458Yes
52HAO2HAO2
Entrez,  Source
hydroxyacid oxidase 2 (long chain)11800.1720.6496Yes
53IDH1IDH1
Entrez,  Source
isocitrate dehydrogenase 1 (NADP+), soluble11830.1720.6549Yes
54SDSSDS
Entrez,  Source
serine dehydratase12220.1690.6574Yes
55HPDHPD
Entrez,  Source
4-hydroxyphenylpyruvate dioxygenase12520.1670.6605Yes
56HDCHDC
Entrez,  Source
histidine decarboxylase12560.1670.6655Yes
57CPT1BCPT1B
Entrez,  Source
carnitine palmitoyltransferase 1B (muscle)12780.1650.6691Yes
58ACADSACADS
Entrez,  Source
acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain12960.1640.6731Yes
59SCLYSCLY
Entrez,  Source
selenocysteine lyase13450.1610.6745Yes
60YARSYARS
Entrez,  Source
tyrosyl-tRNA synthetase13550.1600.6789Yes
61ME1ME1
Entrez,  Source
malic enzyme 1, NADP(+)-dependent, cytosolic15350.1470.6700No
62GGTLA1GGTLA1
Entrez,  Source
gamma-glutamyltransferase-like activity 115980.1430.6698No
63NANPNANP
Entrez,  Source
N-acetylneuraminic acid phosphatase16170.1420.6730No
64PECIPECI
Entrez,  Source
peroxisomal D3,D2-enoyl-CoA isomerase16800.1380.6726No
65HADHBHADHB
Entrez,  Source
hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit17470.1340.6719No
66PPARGC1APPARGC1A
Entrez,  Source
peroxisome proliferative activated receptor, gamma, coactivator 1, alpha17700.1330.6744No
67PTSPTS
Entrez,  Source
6-pyruvoyltetrahydropterin synthase17850.1320.6775No
68GLUD1GLUD1
Entrez,  Source
glutamate dehydrogenase 118640.1280.6757No
69TNFRSF1ATNFRSF1A
Entrez,  Source
tumor necrosis factor receptor superfamily, member 1A19200.1250.6755No
70NFS1NFS1
Entrez,  Source
NFS1 nitrogen fixation 1 (S. cerevisiae)21830.1150.6593No
71PTGESPTGES
Entrez,  Source
prostaglandin E synthase22490.1130.6579No
72ECH1ECH1
Entrez,  Source
enoyl Coenzyme A hydratase 1, peroxisomal22940.1110.6581No
73MIFMIF
Entrez,  Source
macrophage migration inhibitory factor (glycosylation-inhibiting factor)23520.1080.6572No
74ATF4ATF4
Entrez,  Source
activating transcription factor 4 (tax-responsive enhancer element B67)25270.1020.6472No
75HPGDHPGD
Entrez,  Source
hydroxyprostaglandin dehydrogenase 15-(NAD)28320.0900.6271No
76ASRGL1ASRGL1
Entrez,  Source
asparaginase like 129680.0860.6196No
77ARPP-19ARPP-19
Entrez,  Source
-30130.0840.6189No
78BCKDKBCKDK
Entrez,  Source
branched chain ketoacid dehydrogenase kinase30820.0820.6164No
79ADIPOR2ADIPOR2
Entrez,  Source
adiponectin receptor 231140.0810.6166No
80PPARDPPARD
Entrez,  Source
peroxisome proliferative activated receptor, delta32310.0780.6103No
81ACO1ACO1
Entrez,  Source
aconitase 1, soluble34290.0730.5977No
82SLC7A8SLC7A8
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 834360.0730.5995No
83IDH3BIDH3B
Entrez,  Source
isocitrate dehydrogenase 3 (NAD+) beta35450.0700.5935No
84GSSGSS
Entrez,  Source
glutathione synthetase35960.0690.5919No
85GATMGATM
Entrez,  Source
glycine amidinotransferase (L-arginine:glycine amidinotransferase)36910.0670.5869No
86SLC7A7SLC7A7
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 737740.0650.5828No
87AMTAMT
Entrez,  Source
aminomethyltransferase38750.0630.5772No
88ACOX3ACOX3
Entrez,  Source
acyl-Coenzyme A oxidase 3, pristanoyl42910.0530.5474No
89ACADMACADM
Entrez,  Source
acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain43100.0530.5477No
90ACO2ACO2
Entrez,  Source
aconitase 2, mitochondrial43530.0520.5462No
91ABCD2ABCD2
Entrez,  Source
ATP-binding cassette, sub-family D (ALD), member 246130.0460.5280No
92QDPRQDPR
Entrez,  Source
quinoid dihydropteridine reductase46650.0450.5256No
93SLC6A6SLC6A6
Entrez,  Source
solute carrier family 6 (neurotransmitter transporter, taurine), member 648740.0400.5111No
94GAD1GAD1
Entrez,  Source
glutamate decarboxylase 1 (brain, 67kDa)51830.0340.4889No
95PTGDSPTGDS
Entrez,  Source
prostaglandin D2 synthase 21kDa (brain)57840.0220.4442No
96PTGS1PTGS1
Entrez,  Source
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)61030.0160.4206No
97MCCC2MCCC2
Entrez,  Source
methylcrotonoyl-Coenzyme A carboxylase 2 (beta)63810.0100.4000No
98GNEGNE
Entrez,  Source
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase63970.0100.3991No
99FARS2FARS2
Entrez,  Source
phenylalanine-tRNA synthetase 2 (mitochondrial)64200.0090.3978No
100GCLCGCLC
Entrez,  Source
glutamate-cysteine ligase, catalytic subunit65250.0070.3901No
101SLC7A9SLC7A9
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 97015-0.0020.3532No
102GOT2GOT2
Entrez,  Source
glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)7234-0.0070.3369No
103CYP7B1CYP7B1
Entrez,  Source
cytochrome P450, family 7, subfamily B, polypeptide 17432-0.0110.3224No
104ADIPOR1ADIPOR1
Entrez,  Source
adiponectin receptor 17451-0.0110.3214No
105DARSDARS
Entrez,  Source
aspartyl-tRNA synthetase7757-0.0180.2988No
106GNPATGNPAT
Entrez,  Source
glyceronephosphate O-acyltransferase7996-0.0230.2816No
107INDOINDO
Entrez,  Source
indoleamine-pyrrole 2,3 dioxygenase8124-0.0260.2728No
108AARSAARS
Entrez,  Source
alanyl-tRNA synthetase8177-0.0270.2697No
109HSD3B7HSD3B7
Entrez,  Source
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 78334-0.0310.2589No
110SLC3A1SLC3A1
Entrez,  Source
18542-0.0360.2443No
111SLC7A5SLC7A5
Entrez,  Source
solute carrier family 7 (cationic amino acid transporter, y+ system), member 58548-0.0360.2451No
112GCLMGCLM
Entrez,  Source
glutamate-cysteine ligase, modifier subunit8939-0.0450.2170No
113KARSKARS
Entrez,  Source
lysyl-tRNA synthetase9206-0.0510.1984No
114GAD2GAD2
Entrez,  Source
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)9551-0.0610.1743No
115GGT1GGT1
Entrez,  Source
gamma-glutamyltransferase 19642-0.0640.1695No
116DEGS1DEGS1
Entrez,  Source
degenerative spermatocyte homolog 1, lipid desaturase (Drosophila)10024-0.0750.1431No
117GBA2GBA2
Entrez,  Source
glucosidase, beta (bile acid) 210142-0.0790.1367No
118WARSWARS
Entrez,  Source
tryptophanyl-tRNA synthetase10462-0.0900.1155No
119AGPAT1AGPAT1
Entrez,  Source
1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)10638-0.0970.1053No
120PLOD1PLOD1
Entrez,  Source
procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 110791-0.1020.0970No
121LYPLA3LYPLA3
Entrez,  Source
lysophospholipase 3 (lysosomal phospholipase A2)10907-0.1070.0917No
122CD74CD74
Entrez,  Source
CD74 molecule, major histocompatibility complex, class II invariant chain10944-0.1090.0924No
123SCYE1SCYE1
Entrez,  Source
small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)10959-0.1100.0948No
124UGDHUGDH
Entrez,  Source
UDP-glucose dehydrogenase11033-0.1130.0929No
125BRCA1BRCA1
Entrez,  Source
breast cancer 1, early onset11523-0.1390.0602No
126LTA4HLTA4H
Entrez,  Source
leukotriene A4 hydrolase12246-0.1980.0119No
127CROTCROT
Entrez,  Source
carnitine O-octanoyltransferase12469-0.2230.0021No
128DDAH1DDAH1
Entrez,  Source
dimethylarginine dimethylaminohydrolase 112983-0.354-0.0255No
129SMSSMS
Entrez,  Source
spermine synthase13083-0.414-0.0199No
130BCAT1BCAT1
Entrez,  Source
branched chain aminotransferase 1, cytosolic13167-0.505-0.0102No
131DDAH2DDAH2
Entrez,  Source
dimethylarginine dimethylaminohydrolase 213266-0.7410.0058No
Table: GSEA details [plain text format]



Fig 2: CARBOXYLIC_ACID_METABOLIC_PROCESS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CARBOXYLIC_ACID_METABOLIC_PROCESS: Random ES distribution   
Gene set null distribution of ES for CARBOXYLIC_ACID_METABOLIC_PROCESS