Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_single_gel_8d.class.cls #double_gel_8d_versus_single_gel_8d_repos |
| Phenotype | class.cls#double_gel_8d_versus_single_gel_8d_repos |
| Upregulated in class | single_gel_8d |
| GeneSet | CTGTTAC,MIR-194 |
| Enrichment Score (ES) | -0.51806384 |
| Normalized Enrichment Score (NES) | -1.6223389 |
| Nominal p-value | 0.009652509 |
| FDR q-value | 0.10753541 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | MID1IP1 | MID1IP1 Entrez, Source | MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) | 825 | 0.217 | -0.0293 | No |
| 2 | PDHB | PDHB Entrez, Source | pyruvate dehydrogenase (lipoamide) beta | 858 | 0.213 | 0.0003 | No |
| 3 | SEPHS1 | SEPHS1 Entrez, Source | selenophosphate synthetase 1 | 931 | 0.202 | 0.0254 | No |
| 4 | GMFB | GMFB Entrez, Source | glia maturation factor, beta | 1544 | 0.146 | 0.0014 | No |
| 5 | DMD | DMD Entrez, Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 2146 | 0.116 | -0.0263 | No |
| 6 | ARHGAP5 | ARHGAP5 Entrez, Source | Rho GTPase activating protein 5 | 2435 | 0.105 | -0.0321 | No |
| 7 | ST18 | ST18 Entrez, Source | suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) | 2437 | 0.105 | -0.0163 | No |
| 8 | MECP2 | MECP2 Entrez, Source | methyl CpG binding protein 2 (Rett syndrome) | 2966 | 0.086 | -0.0431 | No |
| 9 | LIMK2 | LIMK2 Entrez, Source | LIM domain kinase 2 | 3234 | 0.078 | -0.0515 | No |
| 10 | TRIM9 | TRIM9 Entrez, Source | tripartite motif-containing 9 | 3829 | 0.063 | -0.0866 | No |
| 11 | HOOK3 | HOOK3 Entrez, Source | hook homolog 3 (Drosophila) | 4489 | 0.049 | -0.1289 | No |
| 12 | SDC4 | SDC4 Entrez, Source | syndecan 4 (amphiglycan, ryudocan) | 4826 | 0.041 | -0.1479 | No |
| 13 | GABRB3 | GABRB3 Entrez, Source | gamma-aminobutyric acid (GABA) A receptor, beta 3 | 4900 | 0.040 | -0.1474 | No |
| 14 | BCL2L11 | BCL2L11 Entrez, Source | BCL2-like 11 (apoptosis facilitator) | 5724 | 0.023 | -0.2058 | No |
| 15 | LGI1 | LGI1 Entrez, Source | leucine-rich, glioma inactivated 1 | 5982 | 0.019 | -0.2223 | No |
| 16 | VAPA | VAPA Entrez, Source | VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa | 6041 | 0.017 | -0.2241 | No |
| 17 | PTPN12 | PTPN12 Entrez, Source | protein tyrosine phosphatase, non-receptor type 12 | 6058 | 0.017 | -0.2227 | No |
| 18 | SLC2A3 | SLC2A3 Entrez, Source | solute carrier family 2 (facilitated glucose transporter), member 3 | 6683 | 0.004 | -0.2689 | No |
| 19 | DNMT3A | DNMT3A Entrez, Source | DNA (cytosine-5-)-methyltransferase 3 alpha | 6724 | 0.004 | -0.2714 | No |
| 20 | SOCS2 | SOCS2 Entrez, Source | suppressor of cytokine signaling 2 | 7521 | -0.013 | -0.3293 | No |
| 21 | PFKFB2 | PFKFB2 Entrez, Source | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 | 8523 | -0.035 | -0.3993 | No |
| 22 | NCL | NCL Entrez, Source | nucleolin | 9096 | -0.049 | -0.4350 | No |
| 23 | EXOC5 | EXOC5 Entrez, Source | exocyst complex component 5 | 9426 | -0.058 | -0.4511 | No |
| 24 | TGIF | TGIF Entrez, Source | TGFB-induced factor (TALE family homeobox) | 9563 | -0.061 | -0.4520 | No |
| 25 | TARDBP | TARDBP Entrez, Source | TAR DNA binding protein | 9617 | -0.063 | -0.4465 | No |
| 26 | GIPC1 | GIPC1 Entrez, Source | GIPC PDZ domain containing family, member 1 | 9662 | -0.064 | -0.4401 | No |
| 27 | CSNK1D | CSNK1D Entrez, Source | casein kinase 1, delta | 10146 | -0.079 | -0.4645 | No |
| 28 | ITSN1 | ITSN1 Entrez, Source | intersectin 1 (SH3 domain protein) | 10184 | -0.081 | -0.4551 | No |
| 29 | SUMO2 | SUMO2 Entrez, Source | SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) | 10210 | -0.082 | -0.4447 | No |
| 30 | YTHDF1 | YTHDF1 Entrez, Source | YTH domain family, member 1 | 10244 | -0.083 | -0.4347 | No |
| 31 | TRIM23 | TRIM23 Entrez, Source | tripartite motif-containing 23 | 10865 | -0.105 | -0.4654 | No |
| 32 | GYG1 | GYG1 Entrez, Source | glycogenin 1 | 11566 | -0.141 | -0.4968 | Yes |
| 33 | NUDC | NUDC Entrez, Source | nuclear distribution gene C homolog (A. nidulans) | 11586 | -0.143 | -0.4767 | Yes |
| 34 | CHD4 | CHD4 Entrez, Source | chromodomain helicase DNA binding protein 4 | 11593 | -0.143 | -0.4556 | Yes |
| 35 | TRIP12 | TRIP12 Entrez, Source | thyroid hormone receptor interactor 12 | 11647 | -0.147 | -0.4375 | Yes |
| 36 | AP1G1 | AP1G1 Entrez, Source | adaptor-related protein complex 1, gamma 1 subunit | 11677 | -0.148 | -0.4173 | Yes |
| 37 | SUFU | SUFU Entrez, Source | suppressor of fused homolog (Drosophila) | 11714 | -0.150 | -0.3974 | Yes |
| 38 | FOXA1 | FOXA1 Entrez, Source | forkhead box A1 | 11900 | -0.165 | -0.3864 | Yes |
| 39 | SNX1 | SNX1 Entrez, Source | sorting nexin 1 | 12199 | -0.192 | -0.3799 | Yes |
| 40 | FMR1 | FMR1 Entrez, Source | fragile X mental retardation 1 | 12443 | -0.220 | -0.3651 | Yes |
| 41 | QKI | QKI Entrez, Source | quaking homolog, KH domain RNA binding (mouse) | 12675 | -0.260 | -0.3433 | Yes |
| 42 | HBEGF | HBEGF Entrez, Source | heparin-binding EGF-like growth factor | 12714 | -0.267 | -0.3059 | Yes |
| 43 | TMEM43 | TMEM43 Entrez, Source | transmembrane protein 43 | 13151 | -0.484 | -0.2657 | Yes |
| 44 | TCF2 | TCF2 Entrez, Source | transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor | 13184 | -0.532 | -0.1880 | Yes |
| 45 | DUSP9 | DUSP9 Entrez, Source | dual specificity phosphatase 9 | 13187 | -0.535 | -0.1076 | Yes |
| 46 | HS3ST2 | HS3ST2 Entrez, Source | heparan sulfate (glucosamine) 3-O-sulfotransferase 2 | 13280 | -0.791 | 0.0047 | Yes |
