Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_single_gel_8d.class.cls #double_gel_8d_versus_single_gel_8d_repos |
| Phenotype | class.cls#double_gel_8d_versus_single_gel_8d_repos |
| Upregulated in class | single_gel_8d |
| GeneSet | IDX_TSA_DN_CLUSTER5 |
| Enrichment Score (ES) | -0.57644683 |
| Normalized Enrichment Score (NES) | -1.6216222 |
| Nominal p-value | 0.023166023 |
| FDR q-value | 0.10755644 |
| FWER p-Value | 1.0 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | RAB9 | RAB9 Entrez, Source | RAB9, member RAS oncogene family | 678 | 0.245 | 0.0074 | No |
| 2 | CDH11 | CDH11 Entrez, Source | cadherin 11, type 2, OB-cadherin (osteoblast) | 1034 | 0.189 | 0.0257 | No |
| 3 | FTS | FTS Entrez, Source | fused toes homolog (mouse) | 2664 | 0.097 | -0.0735 | No |
| 4 | SHOX2 | SHOX2 Entrez, Source | short stature homeobox 2 | 2987 | 0.085 | -0.0774 | No |
| 5 | NR3C1 | NR3C1 Entrez, Source | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | 4791 | 0.042 | -0.2028 | No |
| 6 | EDG2 | EDG2 Entrez, Source | endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 | 4894 | 0.040 | -0.2009 | No |
| 7 | SNAPAP | SNAPAP Entrez, Source | SNAP-associated protein | 5048 | 0.037 | -0.2036 | No |
| 8 | ATF1 | ATF1 Entrez, Source | activating transcription factor 1 | 5688 | 0.024 | -0.2459 | No |
| 9 | ACVR2A | ACVR2A Entrez, Source | activin A receptor, type IIA | 5863 | 0.021 | -0.2539 | No |
| 10 | MARCKS | MARCKS Entrez, Source | myristoylated alanine-rich protein kinase C substrate | 9387 | -0.057 | -0.5050 | No |
| 11 | RBMS1 | RBMS1 Entrez, Source | RNA binding motif, single stranded interacting protein 1 | 10149 | -0.080 | -0.5432 | No |
| 12 | RBM39 | RBM39 Entrez, Source | RNA binding motif protein 39 | 10593 | -0.095 | -0.5538 | Yes |
| 13 | ATP6AP2 | ATP6AP2 Entrez, Source | ATPase, H+ transporting, lysosomal accessory protein 2 | 10598 | -0.095 | -0.5315 | Yes |
| 14 | IRF1 | IRF1 Entrez, Source | interferon regulatory factor 1 | 10720 | -0.099 | -0.5170 | Yes |
| 15 | RASA1 | RASA1 Entrez, Source | RAS p21 protein activator (GTPase activating protein) 1 | 10778 | -0.102 | -0.4969 | Yes |
| 16 | NFIX | NFIX Entrez, Source | nuclear factor I/X (CCAAT-binding transcription factor) | 11009 | -0.112 | -0.4874 | Yes |
| 17 | SLC12A2 | SLC12A2 Entrez, Source | solute carrier family 12 (sodium/potassium/chloride transporters), member 2 | 11116 | -0.118 | -0.4673 | Yes |
| 18 | ATF2 | ATF2 Entrez, Source | activating transcription factor 2 | 11597 | -0.143 | -0.4692 | Yes |
| 19 | PAWR | PAWR Entrez, Source | PRKC, apoptosis, WT1, regulator | 11680 | -0.149 | -0.4400 | Yes |
| 20 | KIF5B | KIF5B Entrez, Source | kinesin family member 5B | 11762 | -0.153 | -0.4095 | Yes |
| 21 | SMARCA2 | SMARCA2 Entrez, Source | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 | 12295 | -0.204 | -0.4009 | Yes |
| 22 | DDIT3 | DDIT3 Entrez, Source | DNA-damage-inducible transcript 3 | 12335 | -0.209 | -0.3541 | Yes |
| 23 | ALCAM | ALCAM Entrez, Source | activated leukocyte cell adhesion molecule | 12557 | -0.237 | -0.3144 | Yes |
| 24 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 12902 | -0.323 | -0.2632 | Yes |
| 25 | FNBP4 | FNBP4 Entrez, Source | formin binding protein 4 | 13036 | -0.385 | -0.1815 | Yes |
| 26 | SMS | SMS Entrez, Source | spermine synthase | 13083 | -0.414 | -0.0863 | Yes |
| 27 | LMO7 | LMO7 Entrez, Source | LIM domain 7 | 13121 | -0.443 | 0.0166 | Yes |
