Datasetdouble_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls
#double_gel_8d_versus_single_gel_8d.class.cls
#double_gel_8d_versus_single_gel_8d_repos
Phenotypeclass.cls#double_gel_8d_versus_single_gel_8d_repos
Upregulated in classdouble_gel_8d
GeneSetIDX_TSA_UP_CLUSTER5
Enrichment Score (ES)0.63801265
Normalized Enrichment Score (NES)2.1913033
Nominal p-value0.0
FDR q-value6.8977206E-5
FWER p-Value0.0030
Table: GSEA Results Summary



Fig 1: Enrichment plot: IDX_TSA_UP_CLUSTER5   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LPIN1LPIN1
Entrez,  Source
lipin 1430.7740.0875Yes
2PEX11APEX11A
Entrez,  Source
peroxisomal biogenesis factor 11A650.7040.1684Yes
3PCPC
Entrez,  Source
pyruvate carboxylase790.6520.2439Yes
4ECHS1ECHS1
Entrez,  Source
enoyl Coenzyme A hydratase, short chain, 1, mitochondrial2600.4270.2805Yes
5ACSL1ACSL1
Entrez,  Source
acyl-CoA synthetase long-chain family member 13350.3750.3189Yes
6PORPOR
Entrez,  Source
P450 (cytochrome) oxidoreductase3840.3460.3558Yes
7TIMM8ATIMM8A
Entrez,  Source
translocase of inner mitochondrial membrane 8 homolog A (yeast)4120.3360.3931Yes
8TMEM97TMEM97
Entrez,  Source
transmembrane protein 974510.3200.4278Yes
9C3C3
Entrez,  Source
complement component 36360.2570.4440Yes
10TIMM9TIMM9
Entrez,  Source
translocase of inner mitochondrial membrane 9 homolog (yeast)8280.2160.4550Yes
11ETFBETFB
Entrez,  Source
electron-transfer-flavoprotein, beta polypeptide8650.2120.4772Yes
12ATP5G1ATP5G1
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)8780.2100.5009Yes
13AK2AK2
Entrez,  Source
adenylate kinase 28800.2100.5254Yes
14DBIDBI
Entrez,  Source
diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein)10770.1840.5323Yes
15DNAJB9DNAJB9
Entrez,  Source
DnaJ (Hsp40) homolog, subfamily B, member 911330.1780.5491Yes
16CHPCHP
Entrez,  Source
-11930.1710.5647Yes
17PRDX3PRDX3
Entrez,  Source
peroxiredoxin 312740.1660.5781Yes
18RASD1RASD1
Entrez,  Source
RAS, dexamethasone-induced 113960.1570.5874Yes
19SDHDSDHD
Entrez,  Source
succinate dehydrogenase complex, subunit D, integral membrane protein14040.1570.6053Yes
20ARL6IP2ARL6IP2
Entrez,  Source
ADP-ribosylation factor-like 6 interacting protein 216240.1420.6054Yes
21COX17COX17
Entrez,  Source
COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)19210.1250.5978Yes
22MRPL12MRPL12
Entrez,  Source
mitochondrial ribosomal protein L1219400.1240.6110Yes
23GRPEL1GRPEL1
Entrez,  Source
GrpE-like 1, mitochondrial (E. coli)20170.1210.6195Yes
24IVDIVD
Entrez,  Source
isovaleryl Coenzyme A dehydrogenase22480.1130.6154Yes
25TALDO1TALDO1
Entrez,  Source
transaldolase 124430.1050.6131Yes
26GPHNGPHN
Entrez,  Source
gephyrin24470.1050.6251Yes
27PPARGPPARG
Entrez,  Source
peroxisome proliferative activated receptor, gamma25380.1010.6302Yes
28PEX14PEX14
Entrez,  Source
peroxisomal biogenesis factor 1427220.0950.6276Yes
29IFNGR1IFNGR1
Entrez,  Source
interferon gamma receptor 127430.0940.6371Yes
30MKNK2MKNK2
Entrez,  Source
MAP kinase interacting serine/threonine kinase 228790.0890.6373Yes
31PDCD8PDCD8
Entrez,  Source
programmed cell death 8 (apoptosis-inducing factor)30030.0850.6380Yes
32GPIGPI
Entrez,  Source
glucose phosphate isomerase38570.0630.5812No
33PIM3PIM3
Entrez,  Source
pim-3 oncogene39460.0610.5817No
34PHBPHB
Entrez,  Source
prohibitin39830.0600.5860No
35ACADMACADM
Entrez,  Source
acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain43100.0530.5676No
36ACO2ACO2
Entrez,  Source
aconitase 2, mitochondrial43530.0520.5705No
37MTX2MTX2
Entrez,  Source
metaxin 244560.0490.5686No
38PDIA6PDIA6
Entrez,  Source
protein disulfide isomerase family A, member 651500.0350.5205No
39MRPL34MRPL34
Entrez,  Source
mitochondrial ribosomal protein L3452520.0330.5167No
40CRATCRAT
Entrez,  Source
carnitine acetyltransferase57160.0230.4846No
41COX4NBCOX4NB
Entrez,  Source
COX4 neighbor57880.0220.4819No
42SLC5A6SLC5A6
Entrez,  Source
solute carrier family 5 (sodium-dependent vitamin transporter), member 659440.0190.4725No
43USMG5USMG5
Entrez,  Source
upregulated during skeletal muscle growth 5 homolog (mouse)60690.0170.4651No
44PHB2PHB2
Entrez,  Source
prohibitin 260880.0160.4657No
45PSMA1PSMA1
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 164130.0090.4424No
46ESRRAESRRA
Entrez,  Source
estrogen-related receptor alpha65020.0080.4367No
47TOMM40TOMM40
Entrez,  Source
translocase of outer mitochondrial membrane 40 homolog (yeast)65980.0060.4302No
48COX6A1COX6A1
Entrez,  Source
cytochrome c oxidase subunit VIa polypeptide 168670.0010.4102No
49MAPK6MAPK6
Entrez,  Source
mitogen-activated protein kinase 67114-0.0040.3922No
50NDUFA8NDUFA8
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa7295-0.0080.3796No
51PSMA5PSMA5
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 57365-0.0100.3755No
52GNPATGNPAT
Entrez,  Source
glyceronephosphate O-acyltransferase7996-0.0230.3308No
53TIMM17ATIMM17A
Entrez,  Source
translocase of inner mitochondrial membrane 17 homolog A (yeast)8212-0.0280.3179No
54LRRC59LRRC59
Entrez,  Source
leucine rich repeat containing 598742-0.0400.2827No
55BCAP31BCAP31
Entrez,  Source
B-cell receptor-associated protein 319224-0.0520.2526No
56XBP1XBP1
Entrez,  Source
X-box binding protein 19264-0.0530.2559No
57ALDOAALDOA
Entrez,  Source
aldolase A, fructose-bisphosphate9745-0.0660.2275No
58TXNDC14TXNDC14
Entrez,  Source
thioredoxin domain containing 1410234-0.0820.2005No
59PRPS1PRPS1
Entrez,  Source
phosphoribosyl pyrophosphate synthetase 110317-0.0850.2043No
60SIPA1SIPA1
Entrez,  Source
signal-induced proliferation-associated gene 110416-0.0890.2073No
61FDX1FDX1
Entrez,  Source
ferredoxin 110969-0.1100.1787No
Table: GSEA details [plain text format]



Fig 2: IDX_TSA_UP_CLUSTER5   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: IDX_TSA_UP_CLUSTER5: Random ES distribution   
Gene set null distribution of ES for IDX_TSA_UP_CLUSTER5