Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_single_gel_8d.class.cls #double_gel_8d_versus_single_gel_8d_repos |
| Phenotype | class.cls#double_gel_8d_versus_single_gel_8d_repos |
| Upregulated in class | single_gel_8d |
| GeneSet | TGFBETA_C2_UP |
| Enrichment Score (ES) | -0.74610764 |
| Normalized Enrichment Score (NES) | -1.9103019 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.021319732 |
| FWER p-Value | 0.422 |
| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | MMP3 | MMP3 Entrez, Source | matrix metallopeptidase 3 (stromelysin 1, progelatinase) | 2981 | 0.085 | -0.1964 | No |
| 2 | WNT2B | WNT2B Entrez, Source | wingless-type MMTV integration site family, member 2B | 3037 | 0.084 | -0.1738 | No |
| 3 | RHOG | RHOG Entrez, Source | ras homolog gene family, member G (rho G) | 3472 | 0.072 | -0.1835 | No |
| 4 | DVL1 | DVL1 Entrez, Source | dishevelled, dsh homolog 1 (Drosophila) | 4410 | 0.050 | -0.2378 | No |
| 5 | ITGB2 | ITGB2 Entrez, Source | integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | 6482 | 0.008 | -0.3906 | No |
| 6 | ICAM1 | ICAM1 Entrez, Source | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor | 7160 | -0.005 | -0.4397 | No |
| 7 | LRP1 | LRP1 Entrez, Source | low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) | 8598 | -0.037 | -0.5358 | No |
| 8 | CDH6 | CDH6 Entrez, Source | cadherin 6, type 2, K-cadherin (fetal kidney) | 8608 | -0.037 | -0.5246 | No |
| 9 | FN1 | FN1 Entrez, Source | fibronectin 1 | 9917 | -0.072 | -0.5998 | No |
| 10 | ARHGDIA | ARHGDIA Entrez, Source | Rho GDP dissociation inhibitor (GDI) alpha | 9931 | -0.073 | -0.5777 | No |
| 11 | MMP14 | MMP14 Entrez, Source | matrix metallopeptidase 14 (membrane-inserted) | 12177 | -0.189 | -0.6858 | Yes |
| 12 | JUP | JUP Entrez, Source | junction plakoglobin | 12351 | -0.210 | -0.6319 | Yes |
| 13 | COL1A2 | COL1A2 Entrez, Source | collagen, type I, alpha 2 | 12818 | -0.293 | -0.5736 | Yes |
| 14 | COL3A1 | COL3A1 Entrez, Source | collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) | 12902 | -0.323 | -0.4769 | Yes |
| 15 | TIMP1 | TIMP1 Entrez, Source | TIMP metallopeptidase inhibitor 1 | 13213 | -0.582 | -0.3148 | Yes |
| 16 | MARCKSL1 | MARCKSL1 Entrez, Source | MARCKS-like 1 | 13312 | -1.018 | 0.0023 | Yes |
