Dataset | double_gel_and_single_gel_rma_expression_values_collapsed_to_symbols.class.cls #double_gel_8d_versus_single_gel_8d.class.cls #double_gel_8d_versus_single_gel_8d_repos |
Phenotype | class.cls#double_gel_8d_versus_single_gel_8d_repos |
Upregulated in class | single_gel_8d |
GeneSet | V$E2F_Q3_01 |
Enrichment Score (ES) | -0.46846512 |
Normalized Enrichment Score (NES) | -1.664287 |
Nominal p-value | 0.0053380784 |
FDR q-value | 0.09116383 |
FWER p-Value | 1.0 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | USP2 | USP2 Entrez,  Source | ubiquitin specific peptidase 2 | 134 | 0.557 | 0.0331 | No |
2 | ITGA1 | ITGA1 Entrez,  Source | integrin, alpha 1 | 278 | 0.416 | 0.0546 | No |
3 | BMP7 | BMP7 Entrez,  Source | bone morphogenetic protein 7 (osteogenic protein 1) | 635 | 0.257 | 0.0477 | No |
4 | UXT | UXT Entrez,  Source | ubiquitously-expressed transcript | 1225 | 0.169 | 0.0163 | No |
5 | FBXO9 | FBXO9 Entrez,  Source | F-box protein 9 | 1505 | 0.149 | 0.0069 | No |
6 | PCSK1 | PCSK1 Entrez,  Source | proprotein convertase subtilisin/kexin type 1 | 1853 | 0.129 | -0.0093 | No |
7 | DMD | DMD Entrez,  Source | dystrophin (muscular dystrophy, Duchenne and Becker types) | 2146 | 0.116 | -0.0223 | No |
8 | SLC6A4 | SLC6A4 Entrez,  Source | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 2317 | 0.110 | -0.0267 | No |
9 | USP52 | USP52 Entrez,  Source | ubiquitin specific peptidase 52 | 2621 | 0.098 | -0.0419 | No |
10 | NDUFA11 | NDUFA11 Entrez,  Source | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa | 2744 | 0.094 | -0.0438 | No |
11 | CHGB | CHGB Entrez,  Source | chromogranin B (secretogranin 1) | 3046 | 0.084 | -0.0600 | No |
12 | UNG | UNG Entrez,  Source | uracil-DNA glycosylase | 3194 | 0.079 | -0.0650 | No |
13 | KCNA6 | KCNA6 Entrez,  Source | potassium voltage-gated channel, shaker-related subfamily, member 6 | 3661 | 0.067 | -0.0949 | No |
14 | ATP5G2 | ATP5G2 Entrez,  Source | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) | 3731 | 0.066 | -0.0950 | No |
15 | MYC | MYC Entrez,  Source | v-myc myelocytomatosis viral oncogene homolog (avian) | 3805 | 0.064 | -0.0956 | No |
16 | DMRT1 | DMRT1 Entrez,  Source | doublesex and mab-3 related transcription factor 1 | 4088 | 0.057 | -0.1124 | No |
17 | TBX3 | TBX3 Entrez,  Source | T-box 3 (ulnar mammary syndrome) | 4143 | 0.056 | -0.1121 | No |
18 | HTF9C | HTF9C Entrez,  Source | - | 4181 | 0.055 | -0.1106 | No |
19 | FANCC | FANCC Entrez,  Source | Fanconi anemia, complementation group C | 4494 | 0.049 | -0.1304 | No |
20 | CDC25A | CDC25A Entrez,  Source | cell division cycle 25A | 4801 | 0.042 | -0.1502 | No |
21 | DLST | DLST Entrez,  Source | dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) | 4884 | 0.040 | -0.1533 | No |
22 | MXD3 | MXD3 Entrez,  Source | MAX dimerization protein 3 | 4925 | 0.039 | -0.1533 | No |
23 | KBTBD7 | KBTBD7 Entrez,  Source | kelch repeat and BTB (POZ) domain containing 7 | 5504 | 0.028 | -0.1947 | No |
24 | SFRS2 | SFRS2 Entrez,  Source | splicing factor, arginine/serine-rich 2 | 5597 | 0.026 | -0.1997 | No |
25 | EGR3 | EGR3 Entrez,  Source | early growth response 3 | 5611 | 0.025 | -0.1987 | No |
26 | DAXX | DAXX Entrez,  Source | death-associated protein 6 | 6115 | 0.016 | -0.2354 | No |
27 | NRP2 | NRP2 Entrez,  Source | neuropilin 2 | 6135 | 0.016 | -0.2357 | No |
28 | HMGN2 | HMGN2 Entrez,  Source | high-mobility group nucleosomal binding domain 2 | 6264 | 0.013 | -0.2443 | No |
29 | PELO | PELO Entrez,  Source | pelota homolog (Drosophila) | 6323 | 0.011 | -0.2478 | No |
30 | GLRA3 | GLRA3 Entrez,  Source | glycine receptor, alpha 3 | 6466 | 0.008 | -0.2579 | No |
31 | PAQR4 | PAQR4 Entrez,  Source | progestin and adipoQ receptor family member IV | 6650 | 0.005 | -0.2713 | No |
32 | TOP1 | TOP1 Entrez,  Source | topoisomerase (DNA) I | 6869 | 0.001 | -0.2877 | No |
33 | ACBD6 | ACBD6 Entrez,  Source | acyl-Coenzyme A binding domain containing 6 | 6961 | -0.001 | -0.2945 | No |
34 | NEGR1 | NEGR1 Entrez,  Source | neuronal growth regulator 1 | 7019 | -0.003 | -0.2986 | No |
35 | SLC38A1 | SLC38A1 Entrez,  Source | solute carrier family 38, member 1 | 7296 | -0.008 | -0.3188 | No |
36 | RAB11B | RAB11B Entrez,  Source | RAB11B, member RAS oncogene family | 8077 | -0.025 | -0.3757 | No |
37 | SFRS12 | SFRS12 Entrez,  Source | splicing factor, arginine/serine-rich 12 | 8323 | -0.030 | -0.3918 | No |
38 | UFD1L | UFD1L Entrez,  Source | ubiquitin fusion degradation 1 like (yeast) | 8494 | -0.034 | -0.4020 | No |
39 | H2AFZ | H2AFZ Entrez,  Source | H2A histone family, member Z | 8540 | -0.035 | -0.4026 | No |
40 | KCND2 | KCND2 Entrez,  Source | potassium voltage-gated channel, Shal-related subfamily, member 2 | 8883 | -0.043 | -0.4251 | No |
41 | NASP | NASP Entrez,  Source | nuclear autoantigenic sperm protein (histone-binding) | 8949 | -0.045 | -0.4265 | No |
42 | PIM1 | PIM1 Entrez,  Source | pim-1 oncogene | 9075 | -0.048 | -0.4322 | No |
43 | NCL | NCL Entrez,  Source | nucleolin | 9096 | -0.049 | -0.4300 | No |
44 | PVRL1 | PVRL1 Entrez,  Source | poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin) | 9133 | -0.050 | -0.4289 | No |
45 | FMO4 | FMO4 Entrez,  Source | flavin containing monooxygenase 4 | 9231 | -0.052 | -0.4321 | No |
46 | POLA2 | POLA2 Entrez,  Source | polymerase (DNA directed), alpha 2 (70kD subunit) | 9233 | -0.052 | -0.4282 | No |
47 | USP1 | USP1 Entrez,  Source | ubiquitin specific peptidase 1 | 9270 | -0.054 | -0.4267 | No |
48 | HOXC10 | HOXC10 Entrez,  Source | homeobox C10 | 9351 | -0.056 | -0.4284 | No |
49 | FBXL20 | FBXL20 Entrez,  Source | F-box and leucine-rich repeat protein 20 | 9357 | -0.056 | -0.4244 | No |
50 | KPNB1 | KPNB1 Entrez,  Source | karyopherin (importin) beta 1 | 9435 | -0.058 | -0.4257 | No |
51 | GATA3 | GATA3 Entrez,  Source | GATA binding protein 3 | 9441 | -0.058 | -0.4216 | No |
52 | PIK3R3 | PIK3R3 Entrez,  Source | phosphoinositide-3-kinase, regulatory subunit 3 (p55, gamma) | 9602 | -0.063 | -0.4288 | No |
53 | PPP1R9B | PPP1R9B Entrez,  Source | protein phosphatase 1, regulatory subunit 9B, spinophilin | 9861 | -0.070 | -0.4429 | No |
54 | CTCF | CTCF Entrez,  Source | CCCTC-binding factor (zinc finger protein) | 10143 | -0.079 | -0.4579 | No |
55 | NR3C2 | NR3C2 Entrez,  Source | nuclear receptor subfamily 3, group C, member 2 | 10284 | -0.084 | -0.4619 | Yes |
56 | ING3 | ING3 Entrez,  Source | inhibitor of growth family, member 3 | 10287 | -0.084 | -0.4555 | Yes |
57 | PRPS1 | PRPS1 Entrez,  Source | phosphoribosyl pyrophosphate synthetase 1 | 10317 | -0.085 | -0.4511 | Yes |
58 | NCOA6 | NCOA6 Entrez,  Source | nuclear receptor coactivator 6 | 10335 | -0.086 | -0.4457 | Yes |
59 | XTP3TPA | XTP3TPA Entrez,  Source | - | 10388 | -0.088 | -0.4428 | Yes |
60 | PELP1 | PELP1 Entrez,  Source | proline, glutamic acid and leucine rich protein 1 | 10482 | -0.091 | -0.4428 | Yes |
61 | DNMT1 | DNMT1 Entrez,  Source | DNA (cytosine-5-)-methyltransferase 1 | 10538 | -0.093 | -0.4397 | Yes |
62 | PCNA | PCNA Entrez,  Source | proliferating cell nuclear antigen | 10651 | -0.097 | -0.4407 | Yes |
63 | RHD | RHD Entrez,  Source | Rh blood group, D antigen | 10757 | -0.101 | -0.4407 | Yes |
64 | RFC1 | RFC1 Entrez,  Source | replication factor C (activator 1) 1, 145kDa | 10774 | -0.102 | -0.4340 | Yes |
65 | RPS19 | RPS19 Entrez,  Source | ribosomal protein S19 | 10892 | -0.106 | -0.4346 | Yes |
66 | CITED2 | CITED2 Entrez,  Source | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | 11087 | -0.116 | -0.4403 | Yes |
67 | CDCA7 | CDCA7 Entrez,  Source | cell division cycle associated 7 | 11253 | -0.124 | -0.4431 | Yes |
68 | NUP153 | NUP153 Entrez,  Source | nucleoporin 153kDa | 11280 | -0.126 | -0.4353 | Yes |
69 | DCK | DCK Entrez,  Source | deoxycytidine kinase | 11406 | -0.131 | -0.4346 | Yes |
70 | RALY | RALY Entrez,  Source | RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) | 11665 | -0.148 | -0.4426 | Yes |
71 | E2F1 | E2F1 Entrez,  Source | E2F transcription factor 1 | 11673 | -0.148 | -0.4316 | Yes |
72 | KLF5 | KLF5 Entrez,  Source | Kruppel-like factor 5 (intestinal) | 11774 | -0.155 | -0.4271 | Yes |
73 | HNRPA1 | HNRPA1 Entrez,  Source | heterogeneous nuclear ribonucleoprotein A1 | 11811 | -0.158 | -0.4176 | Yes |
74 | DDX17 | DDX17 Entrez,  Source | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | 11914 | -0.167 | -0.4124 | Yes |
75 | HMGA1 | HMGA1 Entrez,  Source | high mobility group AT-hook 1 | 12047 | -0.177 | -0.4086 | Yes |
76 | SMAD6 | SMAD6 Entrez,  Source | SMAD, mothers against DPP homolog 6 (Drosophila) | 12050 | -0.177 | -0.3950 | Yes |
77 | TLE4 | TLE4 Entrez,  Source | transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) | 12093 | -0.181 | -0.3841 | Yes |
78 | YWHAQ | YWHAQ Entrez,  Source | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide | 12130 | -0.184 | -0.3725 | Yes |
79 | NUMA1 | NUMA1 Entrez,  Source | nuclear mitotic apparatus protein 1 | 12531 | -0.233 | -0.3846 | Yes |
80 | EPHB1 | EPHB1 Entrez,  Source | EPH receptor B1 | 12545 | -0.235 | -0.3674 | Yes |
81 | NUP155 | NUP155 Entrez,  Source | nucleoporin 155kDa | 12674 | -0.259 | -0.3569 | Yes |
82 | HNRPD | HNRPD Entrez,  Source | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) | 12695 | -0.263 | -0.3380 | Yes |
83 | WEE1 | WEE1 Entrez,  Source | WEE1 homolog (S. pombe) | 12897 | -0.319 | -0.3284 | Yes |
84 | DHX40 | DHX40 Entrez,  Source | DEAH (Asp-Glu-Ala-His) box polypeptide 40 | 13019 | -0.376 | -0.3084 | Yes |
85 | MCM7 | MCM7 Entrez,  Source | MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) | 13028 | -0.381 | -0.2795 | Yes |
86 | UCHL1 | UCHL1 Entrez,  Source | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) | 13032 | -0.382 | -0.2501 | Yes |
87 | ID3 | ID3 Entrez,  Source | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | 13077 | -0.411 | -0.2215 | Yes |
88 | PTMA | PTMA Entrez,  Source | prothymosin, alpha (gene sequence 28) | 13120 | -0.443 | -0.1903 | Yes |
89 | KIAA0101 | KIAA0101 Entrez,  Source | KIAA0101 | 13128 | -0.448 | -0.1561 | Yes |
90 | CASP2 | CASP2 Entrez,  Source | caspase 2, apoptosis-related cysteine peptidase (neural precursor cell expressed, developmentally down-regulated 2) | 13202 | -0.565 | -0.1178 | Yes |
91 | STMN1 | STMN1 Entrez,  Source | stathmin 1/oncoprotein 18 | 13288 | -0.823 | -0.0603 | Yes |
92 | MCM6 | MCM6 Entrez,  Source | MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 13289 | -0.828 | 0.0040 | Yes |