BICLUSTER_ID : DNREG-124
PATHOGENS /2/ : streptococcus gordonii,helicobacter pylori
TARGETS /24/ : ATP2C1, ANXA3, RB1, PDHB, KIF11, HMGCR, PPP2CB, PAICS, ASPH, ERGIC2, CCND1, AMD1, SLC16A1, RDH11, LGALS2, ABCA1, ARF4, UGDH, CYP51A1, ACSL3, GJA1, HDAC2, SUCLA2, F2R
Gene SetLeading Edge Genes
NUYTTEN NIPP1 TARGETS DNPPP1CB, SEC23A, LIMD2, HMGCR, PPP2CB, ASPH, TMPO, RNF138, PRKAR1A, CXCR7, SFXN1, TSPYL1, ABCA1, SP3, UGDH, VCL, ACSL3, PKD2, RNF11, YME1L1, ROCK2, ANXA3, KIF2A, EPAS1, GOLT1B, PRR11, SMC1A, MARCH6, RANBP9, LYPLA1, RAP2C, FBXO21, DNAJA1, DUSP5, ARF4, SERINC1, APIP, PDCD10, TACC1, PJA2, RBM12, TRIM8, TBL1XR1, PRPS2, PAK2, MTMR9, RB1CC1, TSGA14, MKNK2, MID1IP1, ATP6V1A, FBXO5, STK39, CAV2, UBE2W, TMED7, SESN1, ZYX, GOLGA2, DPYSL2, F2R, SLC25A24, B3GNT3, RAI14, CMTM6, CREBL2, FNBP1, ERGIC2, SMARCA2, ORC4L, CCND1, CRK, ATF5, ECT2, CAPZA1, WSB2, LBR, MYO1D, HEXIM1, PSMD12, SYNJ2BP, CCDC91, ZMPSTE24
TIEN INTESTINE PROBIOTICS 24HR UPATP2C1, SC5DL, TTF2, HMGCR, SFPQ, TAF11, TMPO, SAMD4A, DHX29, CSRP2, SLBP, EI24, HSPE1, FBXO3, SHCBP1, RECQL, AASDHPPT, RDH11, TOPBP1, LGALS2, SYNCRIP, FBXO5, DNAJC15, ABCD3, TAGLN, ETF1, AGPAT5, TNPO1, SUCLA2, TUBB2A, CPSF6, TPM1, PDHB, KIF11, MAD2L1, UBE2D1, CMTM6, CCND1, AMD1, MRPS28, PTS, MCM4, DNAJA1, GMNN, MSH6, PTPLB, KIF23, TSN, PLEKHB2, NXT2, DNAJC9, CXADR, GMFB, TM7SF3, RBM8A, RBM12, UMPS, RCN2, DYNLL1
PUJANA CHEK2 PCC NETWORKPCNA, POLE3, ABCE1, TTF2, HMGCR, TAF11, TMPO, BRCA1, PAXIP1, SLBP, HSPE1, DNTTIP2, DEK, EXOSC8, GSPT1, GTF2B, CDC6, HS2ST1, CNIH, TAGLN3, CTR9, CTCF, CD2AP, KIF11, AGL, DPM1, ARHGAP11A, SMC1A, SLC16A1, GNPAT, TMEM123, RANBP9, LYPLA1, VRK1, PDCD10, KHDRBS1, PRKRA, GTF2A2, VBP1, DNAJC9, MRE11A, USP1, RCN2, RB1, ANAPC10, PRKRIR, RBM14, TIMM17A, SMC2, RB1CC1, NCBP2, SEC31A, RECQL, CNOT1, OGG1, TOE1, SYNCRIP, LARP5, METAP1, MRPL19, MSH2, CBFB, RMND5A, POLG, TCP1, KLHL23, SNX4, OXSR1, DDX46, EIF5B, CENPE, KNTC1, RECK, GNL2, MAD2L1, PAICS, ITGB3BP, ADNP, TRIM24, TTF1, CAPZA1, MSH6, LBR, CCNE2, RNASEH1, GLMN, GTF2E1, HAT1, HDAC2, CDV3
CAIRO HEPATOBLASTOMA UPHMGCR, ANKRD27, ITGA6, FNBP1L, HSPA2, TSPYL4, GNPAT, TRIB2, PPP1R2, CD24, ALCAM, SP3, GMNN, PDGFA, TSN, TACC1, CYP51A1, CREB3L2, GJA1, TUFT1, HDAC2, DLG5, SEPT2, RNF38, RBM12, ROCK2, PALLD
CHARAFE BREAST CANCER LUMINAL VS BASAL DN
GALE APL WITH FLT3 MUTATED UP
MARTORIATI MDM4 TARGETS FETAL LIVER DN
CREIGHTON ENDOCRINE THERAPY RESISTANCE 5
FLECHNER BIOPSY KIDNEY TRANSPLANT OK VS DONOR UP
MONNIER POSTRADIATION TUMOR ESCAPE UP
SEIDEN MET SIGNALING
SCHLOSSER MYC TARGETS AND SERUM RESPONSE UP
BORCZUK MALIGNANT MESOTHELIOMA UP
MARTINEZ RESPONSE TO TRABECTEDIN
BOYAULT LIVER CANCER SUBCLASS G123 UP
LUI THYROID CANCER PAX8 PPARG UP
MMS MOUSE LYMPH HIGH 4HRS UP
MITSIADES RESPONSE TO APLIDIN DN
BIOCARTA NFAT PATHWAY
GINESTIER BREAST CANCER ZNF217 AMPLIFIED UP
MILI PSEUDOPODIA CHEMOTAXIS UP
NIKOLSKY BREAST CANCER 6P24 P22 AMPLICON
DAZARD RESPONSE TO UV SCC UP
CHOI ATL CHRONIC VS ACUTE DN
HAHTOLA MYCOSIS FUNGOIDES CD4 DN
DIAZ CHRONIC MEYLOGENOUS LEUKEMIA UP
LINDGREN BLADDER CANCER WITH LOH IN CHR9Q
ONKEN UVEAL MELANOMA UP
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED UP
NIKOLSKY BREAST CANCER 15Q26 AMPLICON
KOBAYASHI EGFR SIGNALING 24HR DN
NCI RETINOIC ACID PATHWAY
BIOCARTA TGFB PATHWAY
NCI TRAIL PATHWAY
UDAYAKUMAR MED1 TARGETS UP
CREIGHTON ENDOCRINE THERAPY RESISTANCE 3
WANG LMO4 TARGETS DN
GUTIERREZ MULTIPLE MYELOMA DN
AMIT EGF RESPONSE 240 MCF10A
NCI MITOTIC METAPHASE ANAPHASE TRANSITION
SCHLOSSER MYC TARGETS REPRESSED BY SERUM
LINDGREN BLADDER CANCER CLUSTER 2A DN
MARTINEZ RESPONSE TO TRABECTEDIN DN
POTTI CYTOXAN SENSITIVITY
SCHLOSSER SERUM RESPONSE DN
LIU SOX4 TARGETS UP
FARMER BREAST CANCER APOCRINE VS BASAL
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY DN
GEORGES TARGETS OF MIR192 AND MIR215
AMIT SERUM RESPONSE 240 MCF10A
REACTOME SIGNALING BY ROBO RECEPTOR
SASSON RESPONSE TO FORSKOLIN DN
RODRIGUES NTN1 TARGETS UP
NCI REGULATION OF LIPID METABOLISM BY PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ALPHA PPARALPHA
SENGUPTA NASOPHARYNGEAL CARCINOMA UP
PUJANA XPRSS INT NETWORK
RAMALHO STEMNESS UP
BENPORATH CYCLING GENES
GENTILE RESPONSE CLUSTER D3
GEORGES CELL CYCLE MIR192 TARGETS
DING LUNG CANCER EXPRESSION BY COPY NUMBER
LUI THYROID CANCER CLUSTER 1
SAKAI CHRONIC HEPATITIS VS LIVER CANCER UP
HENDRICKS SMARCA4 TARGETS DN
STEARMAN LUNG CANCER EARLY VS LATE UP
STEIN ESRRA TARGETS DN
ELVIDGE HYPOXIA DN
WANG LMO4 TARGETS UP
SAMOLS TARGETS OF KHSV MIRNAS UP
PYEON HPV POSITIVE TUMORS DN
ZHANG BREAST CANCER PROGENITORS UP
KEGG ADHERENS JUNCTION
TOOKER GEMCITABINE RESISTANCE DN
SIMBULAN UV RESPONSE IMMORTALIZED DN
BECKER TAMOXIFEN RESISTANCE DN
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN DN
SASSON RESPONSE TO GONADOTROPHINS DN
BIDUS METASTASIS UP
PUIFFE INVASION INHIBITED BY ASCITES DN
WANG CLIM2 TARGETS DN
KEGG THYROID CANCER
CHARAFE BREAST CANCER LUMINAL VS MESENCHYMAL DN
CORUM SEC6/8 EXOCYST COMPLEX
BIOCARTA RARRXR PATHWAY
KINSEY TARGETS OF EWSR1 FLII FUSION UP
OSMAN BLADDER CANCER UP
GENTILE UV RESPONSE CLUSTER D8
WEI MYCN TARGETS WITH E BOX
MOREAUX MULTIPLE MYELOMA BY TACI DN
JI RESPONSE TO FSH DN
KIM WT1 TARGETS DN
WENDT COHESIN TARGETS UP
GAZDA DIAMOND BLACKFAN ANEMIA PROGENITOR DN
PUJANA BREAST CANCER WITH BRCA1 MUTATED UP
NETPATH IL 5 PATHWAY DOWN
SCHLOSSER MYC TARGETS AND SERUM RESPONSE DN
WAMUNYOKOLI OVARIAN CANCER GRADES 1 2 UP
TOOKER RESPONSE TO BEXAROTENE UP
DODD NASOPHARYNGEAL CARCINOMA DN
TIEN INTESTINE PROBIOTICS 6HR DN
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
helicobacter pylori kx2 npgecstreptococcus gordoniihelicobacter pylori kx1 npgecGeneSet Name
-0.00740 -0.00750 -0.00278NUYTTEN_NIPP1_TARGETS_DN
-0.00160 -0.08889 -0.00057TIEN_INTESTINE_PROBIOTICS_24HR_UP
-0.00736 -0.06984 -0.00673PUJANA_CHEK2_PCC_NETWORK
-0.00788 -0.14542 -0.00296CAIRO_HEPATOBLASTOMA_UP
-0.08710 -0.02094 -0.16118CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN
-0.01837 -0.02422 -0.04935GALE_APL_WITH_FLT3_MUTATED_UP
-0.06326 -0.03505 -0.07573MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN
-0.01335 -0.01700 -0.01083CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5
-0.00946 -0.00213 -0.01154FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP
-0.18789 -0.03828 -0.18396MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP
-0.06040 -0.12328 -0.01530SEIDEN_MET_SIGNALING
-0.00991 -0.12189 -0.10410SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP
-0.00017 -0.07547 -0.00038BORCZUK_MALIGNANT_MESOTHELIOMA_UP
-0.05313 -0.02100 -0.01765MARTINEZ_RESPONSE_TO_TRABECTEDIN
-0.06351 -0.00514 -0.10257BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP
-0.03689 -0.08001 -0.02015LUI_THYROID_CANCER_PAX8_PPARG_UP
-0.10060 -0.07524 -0.07224MMS_MOUSE_LYMPH_HIGH_4HRS_UP
-0.00683 -0.10799 -0.00925MITSIADES_RESPONSE_TO_APLIDIN_DN
-0.10988 -0.08289 -0.05094BIOCARTA_NFAT_PATHWAY
-0.05775 -0.00028 -0.03537GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_UP
-0.02043 -0.07473 -0.02015MILI_PSEUDOPODIA_CHEMOTAXIS_UP
-0.04648 -0.16086 -0.18865NIKOLSKY_BREAST_CANCER_6P24_P22_AMPLICON
-0.05018 -0.11858 -0.06281DAZARD_RESPONSE_TO_UV_SCC_UP
-0.14395 -0.14267 -0.03153CHOI_ATL_CHRONIC_VS_ACUTE_DN
-0.02754 -0.00856 -0.01416HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN
-0.00417 -0.06444 -0.00276DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP
-0.11048 -0.15389 -0.06746LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q
-0.03980 -0.02793 -0.02071ONKEN_UVEAL_MELANOMA_UP
-0.16449 -0.18302 -0.07886RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN
-0.01985 -0.00004 -0.02887RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP
-0.10000 -0.00406 -0.03532NIKOLSKY_BREAST_CANCER_15Q26_AMPLICON
-0.04230 -0.10813 -0.00610KOBAYASHI_EGFR_SIGNALING_24HR_DN
-0.02116 -0.02710 -0.00563NCI_RETINOIC_ACID_PATHWAY
-0.08129 -0.05514 -0.04996BIOCARTA_TGFB_PATHWAY
-0.11221 -0.14496 -0.10314NCI_TRAIL_PATHWAY
-0.02703 -0.01864 -0.01394UDAYAKUMAR_MED1_TARGETS_UP
-0.10153 -0.11759 -0.07377CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3
-0.03829 -0.01148 -0.09958WANG_LMO4_TARGETS_DN
-0.02938 -0.19205 -0.05272GUTIERREZ_MULTIPLE_MYELOMA_DN
-0.11939 -0.01051 -0.02540AMIT_EGF_RESPONSE_240_MCF10A
-0.15012 -0.15515 -0.08120NCI_MITOTIC_METAPHASE_ANAPHASE_TRANSITION
-0.10600 -0.00010 -0.08176SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM
-0.04049 -0.15607 -0.03272LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN
-0.12049 -0.00003 -0.07984MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN
-0.06681 -0.19729 -0.05431POTTI_CYTOXAN_SENSITIVITY
-0.04255 -0.00049 -0.05312SCHLOSSER_SERUM_RESPONSE_DN
-0.11699 -0.05080 -0.19719LIU_SOX4_TARGETS_UP
-0.03829 -0.14305 -0.01962FARMER_BREAST_CANCER_APOCRINE_VS_BASAL
-0.06317 -0.08449 -0.07418RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN
-0.02831 -0.00002 -0.02663GEORGES_TARGETS_OF_MIR192_AND_MIR215
-0.13669 -0.00139 -0.15220AMIT_SERUM_RESPONSE_240_MCF10A
-0.06658 -0.08931 -0.07277REACTOME_SIGNALING_BY_ROBO_RECEPTOR
-0.05003 -0.06516 -0.01944SASSON_RESPONSE_TO_FORSKOLIN_DN
-0.10129 -0.08297 -0.16861RODRIGUES_NTN1_TARGETS_UP
-0.09987 -0.13006 -0.03160NCI_REGULATION_OF_LIPID_METABOLISM_BY_PEROXISOME_PROLIFERATOR_ACTIVATED_RECEPTOR_ALPHA__PPARALPHA_
-0.07873 -0.00138 -0.06471SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP
-0.01849 -0.15525 -0.00381PUJANA_XPRSS_INT_NETWORK
-0.02836 -0.00002 -0.01531RAMALHO_STEMNESS_UP
-0.02705 -0.12815 -0.01003BENPORATH_CYCLING_GENES
-0.07313 -0.00079 -0.09658GENTILE_RESPONSE_CLUSTER_D3
-0.07937 -0.00030 -0.04536GEORGES_CELL_CYCLE_MIR192_TARGETS
-0.07293 -0.00077 -0.14078DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER
-0.15562 -0.07365 -0.10985LUI_THYROID_CANCER_CLUSTER_1
-0.06743 -0.16015 -0.04994SAKAI_CHRONIC_HEPATITIS_VS_LIVER_CANCER_UP
-0.13217 -0.03731 -0.15268HENDRICKS_SMARCA4_TARGETS_DN
-0.02703 -0.05307 -0.00300STEARMAN_LUNG_CANCER_EARLY_VS_LATE_UP
-0.00219 -0.16606 -0.01125STEIN_ESRRA_TARGETS_DN
-0.01293 -0.05111 -0.00761ELVIDGE_HYPOXIA_DN
-0.04610 -0.07031 -0.02619WANG_LMO4_TARGETS_UP
-0.06708 -0.14242 -0.13456SAMOLS_TARGETS_OF_KHSV_MIRNAS_UP
-0.03740 -0.09728 -0.02755PYEON_HPV_POSITIVE_TUMORS_DN
-0.04272 -0.00093 -0.01156ZHANG_BREAST_CANCER_PROGENITORS_UP
-0.08119 -0.17121 -0.00721KEGG_ADHERENS_JUNCTION
-0.04431 -0.00399 -0.01060TOOKER_GEMCITABINE_RESISTANCE_DN
-0.01971 -0.00063 -0.01763SIMBULAN_UV_RESPONSE_IMMORTALIZED_DN
-0.08840 -0.03756 -0.00650BECKER_TAMOXIFEN_RESISTANCE_DN
-0.01177 -0.06595 -0.01818SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN
-0.05491 -0.03416 -0.02322SASSON_RESPONSE_TO_GONADOTROPHINS_DN
-0.00955 -0.00058 -0.00728BIDUS_METASTASIS_UP
-0.11023 -0.00996 -0.06541PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN
-0.04417 -0.00019 -0.13547WANG_CLIM2_TARGETS_DN
-0.01931 -0.08460 -0.03039KEGG_THYROID_CANCER
-0.02710 -0.08414 -0.03537CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN
-0.14307 -0.19193 -0.12162CORUM_SEC6/8_EXOCYST_COMPLEX
-0.09110 -0.17534 -0.11269BIOCARTA_RARRXR_PATHWAY
-0.00192 -0.03908 -0.00330KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP
-0.08575 -0.00160 -0.06399OSMAN_BLADDER_CANCER_UP
-0.00899 -0.12780 -0.01547GENTILE_UV_RESPONSE_CLUSTER_D8
-0.05104 -0.01096 -0.05065WEI_MYCN_TARGETS_WITH_E_BOX
-0.10216 -0.00006 -0.04602MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.09725 -0.00367 -0.06401JI_RESPONSE_TO_FSH_DN
-0.03111 -0.08498 -0.02271KIM_WT1_TARGETS_DN
-0.06834 -0.00018 -0.07623WENDT_COHESIN_TARGETS_UP
-0.07936 -0.18997 -0.02715GAZDA_DIAMOND_BLACKFAN_ANEMIA_PROGENITOR_DN
-0.02447 -0.16568 -0.00905PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP
-0.16363 -0.19777 -0.03941NETPATH_IL_5_PATHWAY_DOWN
-0.10959 -0.00127 -0.17846SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN
-0.00596 -0.15515 -0.00277WAMUNYOKOLI_OVARIAN_CANCER_GRADES_1_2_UP
-0.04213 -0.00450 -0.01328TOOKER_RESPONSE_TO_BEXAROTENE_UP
-0.03870 -0.00215 -0.06590DODD_NASOPHARYNGEAL_CARCINOMA_DN
-0.02017 -0.03026 -0.02084TIEN_INTESTINE_PROBIOTICS_6HR_DN