BICLUSTER_ID : DNREG-142
PATHOGENS /3/ : pseudomonas aeruginosa,mycobacterium tuberculosis,helicobacter pylori
TARGETS /21/ : HDAC1, NNT, NDUFS5, KIF11, DLAT, VDAC3, AURKA, RRM1, FKBP4, NDUFB5, ADSL, ALDH9A1, NDUFS1, SDHC, NDUFA6, HADH, MCM6, NDUFS2, HDAC2, PPAT, SDHD
Gene SetLeading Edge Genes
WONG EMBRYONIC STEM CELL COREHDAC1, BUB1, AURKA, NCBP2, ADSL, TOP2A, SDHC, ATP5O, MSH2, BANF1, ZNF22, BUB1B, KIF11, LMNB1, MAD2L1, DLAT, SPAG5, CSE1L, RRM1, SUMO1, RPA3, LYPLA1, TRIP13, TTK, CCNB2, HADH, KIF23, CCT5, POLE2, DHX9, VBP1, XRCC5, RCN2
REACTOME ELECTRON TRANSPORT CHAINNDUFA6, NDUFS5, COX4I1, UQCRH, NDUFS2, NDUFB5, UQCRC2, SDHD, NDUFS1, CYC1, SDHC
BLUM RESPONSE TO SALIRASIB DNHDAC1, MYCBP, UPK1B, TOP2B, BUB1, ZWINT, TMPO, GALNT1, STMN1, CENPA, AURKA, RFC5, TOP2A, TOPBP1, CENPF, ABCD3, MSH2, MCM6, IRS1, BUB1B, KIF11, MAD2L1, VDAC3, RRM1, RPA3, PRKDC, TRIP13, CCNB2, TTK, MSH6, TPX2, KIF23, CDC25C, POLE2, UBE2E3, H2AFV, GPSM2, KIF2C
LINDGREN BLADDER CANCER CLUSTER 3 UPKIF11, MAD2L1, BUB1, ZWINT, TMPO, PRPS2, CCNB1, STMN1, CENPA, AURKA, ALDH9A1, RPA3, TOP2A, CENPF, TRIP13, CCNB2, MSH2, PTPLB, KIF23, TMEM106C, CPD, MCM6, H2AFV, AK2, PPAT, KIFAP3, WDHD1, KIF2C
PAL PRMT5 TARGETS UPNNT, KIF11, TMPO, CETN3, STMN1, RRM1, FKBP4, TOPBP1, RFC5, TRIP13, PSIP1, TTK, CCNB2, CDC25C, KIF23, POLE2, UBE2E3, HAT1, COPS3, NUP88, H2AFV, EHMT2, RCN2
MARKEY RB1 ACUTE LOF DNCAV1, KIF2A, KIF11, MAD2L1, BUB1, TMPO, CCNB1, RAD21, STMN1, CENPA, AURKA, ADSL, SMC3, TOPBP1, RFC5, TRIP13, PSIP1, CCNB2, DSTN, CDC25C, KIF23, TMEM106C, H2AFV, HDAC2
MORI LARGE PRE BII LYMPHOCYTE UPMCM6, AURKA, TTK, RRM1, H2AFV, LMNB1, CENPA
KEGG CELL CYCLEBUB1B, HDAC1, TTK, CCNB2, MAD2L1, BUB1, CDC25C, CCNB1, MCM6, HDAC2, SMC3, PRKDC
REACTOME CELL CYCLE MITOTICBUB1B, KIF2A, MAD2L1, BUB1, ZWINT, RAD21, CCNB1, AZI1, CENPA, AURKA, CKAP5, RPA3, SMC3, RFC5, CENPF, CCNB2, KIF23, CDC25C, POLE2, MCM6, KIF2C
REN BOUND BY E2FRFC3, TTK, MSH2, MAD2L1, MLH1, CENPA, MCM6, RRM1, CENPE, RPA3, TOP2A, PRKDC
CHIANG LIVER CANCER SUBCLASS PROLIFERATION UPBUB1B, LMNB1, KIF11, MAD2L1, ZWINT, CCNB1, FOXM1, OIP5, TOP2A, CD24, CENPF, TRIP13, CCNB2, TTK, TPX2, KIF23, WASF1, GPD1L, HDAC2, KIF2C
BENPORATH PROLIFERATIONCCNB2, TTK, MAD2L1, MSH2, ILF2, BUB1, SPAG5, STMN1, CENPA, AURKA, HDAC2, H2AFV, GPSM2, TOP2A
RHODES UNDIFFERENTIATED CANCERMAD2L1, ILF2, KIF23, CCNB1, RAD21, CENPA, MCM6, FOXM1, RPA3, TOP2A, KIF2C, TRIP13
NCI AURORA B PATHWAYBUB1, KIF23, EVI5, CENPA, STMN1, AURKA, SMC4, CUL3, KIF2C
NCI PLK1 PATHWAYAURKA, BUB1B, KIF2A, TPX2, BUB1, CDC25C, CCNB1
CHANG CYCLING GENESCCNB2, LMNB1, ILF2, KIF23, CDC25C, CENPA, FOXM1, AURKA
AMUNDSON GAMMA RADIATION RESPONSECCNB2, TTK, MAD2L1, CDKN2C, BUB1, KIF23, CDC25C, CCNB1, CENPA, AURKA, CENPF
CORUM ANTI-HDAC2 COMPLEX
REACTOME MITOCHONDRIAL TRNA AMINOACYLATION
NCI NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY
PUJANA BRCA1 PCC NETWORK
SCIAN CELL CYCLE TARGETS OF TP53 AND TP73 DN
BOYAULT LIVER CANCER SUBCLASS G123 UP
KUMAMOTO RESPONSE TO NUTLIN 3A DN
HORIUCHI WTAP TARGETS DN
ZHAN MULTIPLE MYELOMA SUBGROUPS
ODONNELL TARGETS OF MYC AND TFRC DN
MOLENAAR TARGETS OF CCND1 AND CDK4 DN
BUYTAERT PHOTODYNAMIC THERAPY STRESS DN
CORUM F1F0-ATP SYNTHASE EC 3.6.3.14 MITOCHONDRIAL
MOREAUX B LYMPHOCYTE MATURATION BY TACI DN
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NER
FRASOR RESPONSE TO SERM OR FULVESTRANT DN
CORUM CTBP CORE COMPLEX
HOFFMANN LARGE TO SMALL PRE BII LYMPHOCYTE UP
NCI MITOTIC PROMETAPHASEBUB1B, KIF2A, BUB1, ZWINT, CENPA, SMC1A, CKAP5, STAG1, SMC3, KIF2C
KOBAYASHI EGFR SIGNALING 24HR DN
NCI CHK1 CHK2 CDS1 MEDIATED INACTIVATION OF CYCLIN B CDK1 COMPLEX
BOYAULT LIVER CANCER SUBCLASS G23 UP
PUJANA BREAST CANCER LIT INT NETWORK
KEGG MISMATCH REPAIR
HUMMEL BURKITTS LYMPHOMA UP
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITS
CORUM BRM-SIN3A COMPLEX
CAIRO HEPATOBLASTOMA CLASSES UP
REACTOME INACTIVATION OF APC VIA DIRECT INHIBITION OF THE APCOMPLEX
NCI MITOTIC METAPHASE ANAPHASE TRANSITION
REACTOME SYNTHESIS OF DNA
SHEDDEN LUNG CANCER POOR SURVIVAL A6
SCIBETTA KDM5B TARGETS DN
KAUFFMANN DNA REPAIR GENES
NCI REGULATION OF APC C ACTIVATORS BETWEEN G1 S AND EARLY ANAPHASE
CORUM BASC AB 80 COMPLEX BRCA1-ASSOCIATED GENOME SURVEILLANCE COMPLEX
CORUM BASC COMPLEX BRCA1-ASSOCIATED GENOME SURVEILLANCE COMPLEX
REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA
CORUM RAD17-RFC COMPLEX
MORI EMU MYC LYMPHOMA BY ONSET TIME UP
MOOTHA VOXPHOS
CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 UP
BENPORATH CYCLING GENES
NCI SNRNP ASSEMBLY
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITS
WAKASUGI HAVE ZNF143 BINDING SITES
REACTOME MITOTIC PROMETAPHASE
NCI APC CDC20 MEDIATED DEGRADATION OF NEK2A
MUELLER PLURINET
MANALO HYPOXIA DN
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
FINETTI BREAST CANCER BASAL VS LUMINAL
CORUM ANAPHASE-PROMOTING COMPLEX
YU MYC TARGETS UP
CORUM PCNA-MUTS-ALPHA-MUTL-ALPHA-DNA COMPLEX
CHIANG LIVER CANCER SUBCLASS UNANNOTATED DN
FERREIRA EWINGS SARCOMA UNSTABLE VS STABLE UPPSIP1, LMNB1, TPX2, TMPO, ZWINT, KIF23, POLE2, CCNB1, ARHGAP11A, CENPE, RPA3, TOP2A, KIF2C, CENPF
NCI MRNA SPLICING MAJOR PATHWAY
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
KINSEY TARGETS OF EWSR1 FLII FUSION UP
FOURNIER ACINAR DEVELOPMENT LATE 2
CAFFAREL RESPONSE TO THC 24HR 5 DN
REACTOME S PHASE
NCI MITOCHONDRIAL TRNA AMINOACYLATION
FINETTI BREAST CANCER KINOME RED
NCI INACTIVATION OF APC C VIA DIRECT INHIBITION OF THE APC C COMPLEX
MOREAUX MULTIPLE MYELOMA BY TACI DN
CORUM SNF2H-COHESIN-NURD COMPLEX
RHODES CANCER META SIGNATURE
VANTVEER BREAST CANCER METASTASIS DN
REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS
SCHLOSSER MYC TARGETS AND SERUM RESPONSE DN
DODD NASOPHARYNGEAL CARCINOMA DN
KEGG NUCLEOTIDE EXCISION REPAIR
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
helicobacter pylori kx2 npgecpseudomonas aeruginosamycobacterium tuberculosisGeneSet Name
-0.01048 -0.00224 -0.00242WONG_EMBRYONIC_STEM_CELL_CORE
-0.00115 -0.07078 -0.04570REACTOME_ELECTRON_TRANSPORT_CHAIN
-0.01232 -0.00107 -0.00002BLUM_RESPONSE_TO_SALIRASIB_DN
-0.00379 -0.01432 -0.00491LINDGREN_BLADDER_CANCER_CLUSTER_3_UP
-0.00055 -0.00092 -0.01450PAL_PRMT5_TARGETS_UP
-0.00537 -0.08917 -0.00002MARKEY_RB1_ACUTE_LOF_DN
-0.01198 -0.02813 -0.00009MORI_LARGE_PRE_BII_LYMPHOCYTE_UP
-0.00787 -0.00226 -0.06629KEGG_CELL_CYCLE
-0.00105 -0.00096 -0.00028REACTOME_CELL_CYCLE_MITOTIC
-0.01436 -0.00642 -0.00002REN_BOUND_BY_E2F
-0.00492 -0.05367 -0.05889CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP
-0.00449 -0.00017 -0.03741BENPORATH_PROLIFERATION
-0.00065 -0.02924 -0.00660RHODES_UNDIFFERENTIATED_CANCER
-0.01193 -0.00008 -0.00991NCI_AURORA_B_PATHWAY
-0.00213 -0.01327 -0.00148NCI_PLK1_PATHWAY
-0.00078 -0.01964 -0.01938CHANG_CYCLING_GENES
-0.00005 -0.00099 -0.00291AMUNDSON_GAMMA_RADIATION_RESPONSE
-0.05953 -0.05658 -0.16865CORUM_ANTI-HDAC2_COMPLEX
-0.07012 -0.09753 -0.09612REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION
-0.15312 -0.13817 -0.08341NCI_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY
-0.04039 -0.01546 -0.12426PUJANA_BRCA1_PCC_NETWORK
-0.01919 -0.15407 -0.00440SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN
-0.06351 -0.01718 -0.00026BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP
-0.04464 -0.07193 -0.06205KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.00220 -0.00235 -0.00035HORIUCHI_WTAP_TARGETS_DN
-0.03354 -0.19470 -0.02974ZHAN_MULTIPLE_MYELOMA_SUBGROUPS
-0.08707 -0.09189 -0.03017ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN
-0.00059 -0.16096 -0.00064MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN
-0.00546 -0.03826 -0.13556BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN
-0.00786 -0.02675 -0.15924CORUM_F1F0-ATP_SYNTHASE_EC_3.6.3.14_MITOCHONDRIAL
-0.04233 -0.07235 -0.11011MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN
-0.01553 -0.18027 -0.00004NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.01242 -0.10952 -0.00012FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN
-0.11937 -0.12350 -0.13597CORUM_CTBP_CORE_COMPLEX
-0.00203 -0.11187 -0.00013HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP
-0.00583 -0.00094 -0.00003NCI_MITOTIC_PROMETAPHASE
-0.04230 -0.08946 -0.00020KOBAYASHI_EGFR_SIGNALING_24HR_DN
-0.02559 -0.10992 -0.04274NCI_CHK1_CHK2_CDS1__MEDIATED_INACTIVATION_OF_CYCLIN_B_CDK1_COMPLEX
-0.17014 -0.17995 -0.07599BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP
-0.02506 -0.19807 -0.15164PUJANA_BREAST_CANCER_LIT_INT_NETWORK
-0.02889 -0.13621 -0.00003KEGG_MISMATCH_REPAIR
-0.02239 -0.16852 -0.01937HUMMEL_BURKITTS_LYMPHOMA_UP
-0.10675 -0.19900 -0.00382CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.18531 -0.08935 -0.04040CORUM_BRM-SIN3A_COMPLEX
-0.02501 -0.00726 -0.00002CAIRO_HEPATOBLASTOMA_CLASSES_UP
-0.00281 -0.01134 -0.17816REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX
-0.15012 -0.12423 -0.13095NCI_MITOTIC_METAPHASE_ANAPHASE_TRANSITION
-0.00016 -0.12476 -0.18874REACTOME_SYNTHESIS_OF_DNA
-0.02761 -0.01610 -0.00051SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6
-0.00149 -0.02302 -0.19518SCIBETTA_KDM5B_TARGETS_DN
-0.09101 -0.04560 -0.00010KAUFFMANN_DNA_REPAIR_GENES
-0.00014 -0.01943 -0.16767NCI_REGULATION_OF_APC_C_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE
-0.14772 -0.04581 -0.00738CORUM_BASC_AB_80_COMPLEX_BRCA1-ASSOCIATED_GENOME_SURVEILLANCE_COMPLEX
-0.03121 -0.09605 -0.00925CORUM_BASC_COMPLEX_BRCA1-ASSOCIATED_GENOME_SURVEILLANCE_COMPLEX
-0.09134 -0.17386 -0.02022REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.09528 -0.18498 -0.18080CORUM_RAD17-RFC_COMPLEX
-0.09503 -0.04215 -0.12221MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP
-0.00217 -0.07540 -0.19524MOOTHA_VOXPHOS
-0.01724 -0.18697 -0.00932CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP
-0.02705 -0.01705 -0.04552BENPORATH_CYCLING_GENES
-0.07564 -0.16868 -0.03485NCI_SNRNP_ASSEMBLY
-0.06173 -0.07338 -0.00019CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.13870 -0.19894 -0.02256WAKASUGI_HAVE_ZNF143_BINDING_SITES
-0.00148 -0.00072 -0.00015REACTOME_MITOTIC_PROMETAPHASE
-0.01433 -0.01596 -0.16937NCI_APC_CDC20_MEDIATED_DEGRADATION_OF_NEK2A
-0.07611 -0.07862 -0.00113MUELLER_PLURINET
-0.02679 -0.03027 -0.00001MANALO_HYPOXIA_DN
-0.04603 -0.00868 -0.05761RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.03351 -0.12915 -0.00194FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL
-0.02714 -0.13851 -0.16141CORUM_ANAPHASE-PROMOTING_COMPLEX
-0.00132 -0.12022 -0.00255YU_MYC_TARGETS_UP
-0.16923 -0.13369 -0.08706CORUM_PCNA-MUTS-ALPHA-MUTL-ALPHA-DNA_COMPLEX
-0.00042 -0.00006 -0.14510CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN
-0.01181 -0.05357 -0.00357FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP
-0.00638 -0.12422 -0.02478NCI_MRNA_SPLICING___MAJOR_PATHWAY
-0.01265 -0.10608 -0.00141ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN
-0.00192 -0.00097 -0.00940KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP
-0.00795 -0.11866 -0.09804FOURNIER_ACINAR_DEVELOPMENT_LATE_2
-0.06277 -0.03826 -0.17204CAFFAREL_RESPONSE_TO_THC_24HR_5_DN
-0.00017 -0.10989 -0.14471REACTOME_S_PHASE
-0.07285 -0.08043 -0.08725NCI_MITOCHONDRIAL_TRNA_AMINOACYLATION
-0.02908 -0.09937 -0.00240FINETTI_BREAST_CANCER_KINOME_RED
-0.00238 -0.01356 -0.16791NCI_INACTIVATION_OF_APC_C_VIA_DIRECT_INHIBITION_OF_THE_APC_C_COMPLEX
-0.10216 -0.01021 -0.00807MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.04797 -0.03631 -0.17561CORUM_SNF2H-COHESIN-NURD_COMPLEX
-0.04160 -0.02762 -0.17263RHODES_CANCER_META_SIGNATURE
-0.11662 -0.00024 -0.15585VANTVEER_BREAST_CANCER_METASTASIS_DN
-0.06882 -0.03954 -0.02714REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS
-0.10959 -0.04099 -0.17840SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN
-0.03870 -0.00288 -0.17486DODD_NASOPHARYNGEAL_CARCINOMA_DN
-0.15205 -0.03758 -0.00038KEGG_NUCLEOTIDE_EXCISION_REPAIR