BICLUSTER_ID : DNREG-184
PATHOGENS /3/ : bifidobacterium bifidum,lactobacillus acidophilus,ehrlichia chaffeensis
TARGETS /81/ : NME1, ACY1, NARS, TARS, IARS2, PCCA, GOT2, SDHC, NDUFA8, RAP2A, PEBP1, MUT, PDHA1, SORD, IDE, DAPK1, SUCLG2, NDUFA12, IDH3B, PDAP1, NDUFC1, CAD, MTHFD1, DLAT, DTYMK, SRM, LMAN1, SLC16A1, SHMT1, OGDH, ACAT1, PCCB, IDH1, FKBP3, NDUFB6, CYP51A1, GLO1, FADS2, YARS2, HSD17B4, HSD17B8, GLUL, SHMT2, NNT, NDUFA5, AHCY, SDHA, MCCC2, ALAD, COMT, FKBP4, NDUFB5, PCTP, UQCRC1, APEX1, SLC29A1, UROD, NAGS, NDUFAB1, MARS, GALK1, NDST1, NDUFB2, SLC25A15, SDHB, PAICS, HPRT1, IDH3G, PUM1, ATIC, ACADM, PARP1, SDC2, FADS1, OAT, CDK8, HDAC2, F5, FASN, QDPR, DARS
Gene SetLeading Edge Genes
DIAZ CHRONIC MEYLOGENOUS LEUKEMIA UPTARS, PTPLA, CDH1, POLR2B, PCCA, MTIF2, GOT2, EI24, ICT1, NDUFA8, BTBD1, POLD2, MUT, CNBP, ANAPC1, TERF1, PDHA1, IDE, STRAP, ACYP1, PDAP1, CAD, AGL, MTHFD1, TM9SF3, LMAN1, MARCH6, HEBP1, DDB1, ALG3, PRKRA, LIN7C, ITGAE, FKBP3, NDUFB6, GLO1, WDR13, WDR61, PRDX3, CLNS1A, HSD17B4, PHB2, MRPS35, PRPSAP2, TM9SF1, SREBF2, C1QBP, DNMT3B, ALAD, NCBP2, SS18, HMGB3, POLR2E, UQCRC1, FNTA, DPAGT1, PPA2, SSBP1, NIPSNAP1, UROD, CAPN7, NDUFAB1, BAG4, PAICS, CMAS, ATIC, ACAA2, ACADM, MRPS15, EIF2B1, CPOX, PRKD3, ADK, TSC2, FADS1, PCYT2, HDAC2, RRAGA, FASN, ELOVL5, DARS, AUP1, NME1, ABCE1, ILF2, CETN2, ACY1, PRDX4, MRPL49, SOLH, CYC1, SCD, NDFIP1, FTSJ2, CPSF1, GSPT1, PEBP1, ECD, SORD, COPS3, DAPK1, CNIH, IDH3B, ABCB6, PHKB, TERF2IP, SLC16A1, SHMT1, OGDH, PXMP3, MAN2A2, ACAT1, PITPNB, PCCB, PUS1, PTOV1, PECI, AKAP1, CYP51A1, FADS2, HIBCH, SHMT2, NNT, NDUFA5, FXN, MCCC2, STOML2, FKBP4, COMT, PRKAG1, ORC5L, PCTP, RREB1, LANCL1, PDCD2, SLC29A1, EIF4G1, SSR1, ZNF22, HMBS, SLC25A15, UPF3B, CCNH, LASS2, SMARCA2, SH3GLB2, ACO2, PUM1, FUSIP1, ACO1, MSH6, PARP1, AQP3, PMS1, OAT, ZMPSTE24, ANP32A, CDK8, H2AFV, EIF4B, ACLY, MIPEP, QDPR, GTF2H4
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UPMRPL9, FKBP11, CSTF2, CETN2, NUDCD2, IARS2, STRA13, ZCCHC17, SDF2L1, EXOSC5, BRP44, STT3A, ICT1, HSPA14, SDHC, NDUFA8, BOLA1, TFB2M, ACTL6A, PDCD2L, YIF1B, RAP2A, MRPS18B, PIGY, XRCC6BP1, CNIH, NDUFA12, NOL7, IRAK1, MLH1, DTYMK, SCAMP3, GNPAT, GEMIN6, TMEM147, MRPL36, MRPL18, RNF26, MRPS17, PSMD6, NUP37, PFDN6, IDH1, NDUFB6, WDR61, PHPT1, PEX19, PSME3, YARS2, HSD17B8, HIST2H2BE, XRCC6, IFRD2, SREBF2, RSRC1, ELOVL6, C1QBP, AHCY, TMTC4, DHX29, PRPSAP1, EPHX1, NCBP2, NDUFB5, MID1IP1, APEX1, PDIA6, CHCHD1, TFRC, MTX3, NAGS, DDX46, REXO2, MARS, NDST1, CRY1, STT3B, SSR1, LYAR, ZFAND1, RANBP6, HARS2, VAMP5, HPRT1, EIF2A, SLC35B1, RBBP7, ATP2A2, RPA3, PIGB, USP34, TBC1D16, EIF2B1, MSH6, DNAJC19, PARP1, SDC2, DRG1, PURA, ZMPSTE24, IPO4, F5, ACLY, GTF2H4, DEPDC6, MTFR1
GOLDRATH HOMEOSTATIC PROLIFERATIONHDGF, MRPL9, NME1, MRPS25, NUDCD2, PRPS2, DUSP19, TM9SF3, CMAS, SFXN1, BRP44, BAG2, STT3A, ZHX1, SNX9, ITFG1, PCCB, PDCD2, AU021838, MUT, PCBD2, LIN7C, BYSL, MKI67IP, NDUFAB1, 2310028O11RIK, GALK1, NDUFB2, KLF9, QDPR, GLUL, NDUFC1, PDAP1
REACTOME PYRUVATE METABOLISM AND TCA CYCLEDLST, NNT, SDHB, DLAT, PDHA1, IDH3G, SLC16A1, ACO2, PDK1, IDH2, SUCLG2, IDH3B, OGDH
WELCSH BRCA1 TARGETS 1 DNCAD, NME3, SCAP, BOP1, MTHFD1, NARS, SRM, CCDC85B, ATIC, PRKACA, FKBP4, AGPAT2, ALG3, EMG1, SLC29A1, BYSL, DHCR24, EIF4G1, MAP2K5, RASSF7, FASN, TRAP1
REACTOME CITRIC ACID CYCLEDLST, NNT, SDHB, SDHA, CS, IDH3G, ACO2, IDH2, SUCLG2, IDH3B, SDHC, OGDH
CORUM TERF2-RAP1 COMPLEX
KEGG CYSTEINE AND METHIONINE METABOLISM
NCI CITRIC ACID CYCLE TCA CYCLE
REACTOME MITOCHONDRIAL TRNA AMINOACYLATION
KIM MYC AMPLIFICATION TARGETS UP
NCI RNA POL II CTD PHOSPHORYLATION AND INTERACTION WITH CE
NCI RNA POL II CTD PHOSPHORYLATION AND INTERACTION WITH CE1
NCI TAT MEDIATED ELONGATION OF THE HIV 1 TRANSCRIPT
BIOCARTA KREB PATHWAY
REACTOME RNA POL II CTD PHOSPHORYLATION AND INTERACTION WITH CE
REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM
STEIN ESRRA TARGETS
REACTOME ABORTIVE ELONGATION OF HIV1 TRANSCRIPT IN THE ABSENCE OF TAT
REACTOME PEROXISOMAL LIPID METABOLISM
CORUM F1F0-ATP SYNTHASE EC 3.6.3.14 MITOCHONDRIAL
REACTOME RNA POLYMERASE I III AND MITOCHONDRIAL TRANSCRIPTIONTFB2M, RRN3, POLR3H, POLR2F, POLR2L, HIST1H4I, CCNH, GTF3C4, NFIC, GTF2H4, HIST2H2BE, MNAT1
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 10
NCI FORMATION OF THE HIV 1 EARLY ELONGATION COMPLEX
KEGG VALINE LEUCINE AND ISOLEUCINE BIOSYNTHESIS
NCI MRNA CAPPING
NCI FORMATION OF THE EARLY ELONGATION COMPLEX
CORUM RESPIRATORY CHAIN COMPLEX I GAMMA SUBUNIT MITOCHONDRIAL
KEGG BIOSYNTHESIS OF UNSATURATED FATTY ACIDS
CORUM OLIGOSACCHARYLTRANSFERASE OSTC-I
NCI RNA POLYMERASE II TRANSCRIPTION ELONGATION
REACTOME CHOLESTEROL BIOSYNTHESIS
REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING
STARK PREFRONTAL CORTEX 22Q11 DELETION DN
NCI HIV 1 TRANSCRIPTION ELONGATION
REACTOME FORMATION OF THE EARLY ELONGATION COMPLEX
NCI BETA OXIDATION OF DECANOYL COA TO OCTANOYL COA COA
CORUM RESPIRATORY CHAIN COMPLEX I EARLY INTERMEDIATE NDUFAF1 ASSEMBLY MITOCHONDRIAL
MOOTHA TCA
NCI FORMATION OF HIV 1 ELONGATION COMPLEX CONTAINING HIV 1 TAT
CORUM RESPIRATORY CHAIN COMPLEX I INCOMPLETE INTERMEDIATE MITOCHONDRIAL
RAMALHO STEMNESS UP
CORUM WRN-KU70-KU80-PARP1 COMPLEX
REACTOME GENE EXPRESSION
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 13
NCI FORMATION OF RNA POL II ELONGATION COMPLEX
BOYAULT LIVER CANCER SUBCLASS G12 UP
CORUM RESPIRATORY CHAIN COMPLEX I BETA SUBUNIT MITOCHONDRIAL
CORUM OLIGOSACCHARYLTRANSFERASE OSTC-III
REACTOME MICRORNA BIOGENESISPOLR2E, RAN, POLR2B, XPO5, POLR2F, POLR2L, POLR2J
LASTOWSKA NEUROBLASTOMA COPY NUMBER DN
NCI BETA OXIDATION OF OCTANOYL COA TO HEXANOYL COA
REACTOME DIABETES PATHWAYS
STEIN ESRRA TARGETS UP
CORUM RAP1 COMPLEX
HU ANGIOGENESIS DN
NCI ABORTIVE ELONGATION OF HIV 1 TRANSCRIPT IN THE ABSENCE OF TAT
NCI PROPIONYL COA CATABOLISM
REACTOME VITAMIN B5 (PANTOTHENATE) METABOLISM
PENG RAPAMYCIN RESPONSE DN
RICKMAN METASTASIS UP
KEGG N GLYCAN BIOSYNTHESIS
CORUM RESPIRATORY CHAIN COMPLEX I LAMBDA SUBUNIT MITOCHONDRIAL
SCHLOSSER MYC AND SERUM RESPONSE SYNERGY
BLALOCK ALZHEIMERS DISEASE DN
REACTOME HIV1 TRANSCRIPTION ELONGATION
CORUM OLIGOSACCHARYLTRANSFERASE OSTC-II
NCI MITOCHONDRIAL TRNA AMINOACYLATION
ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR DN
CORUM 28S RIBOSOMAL SUBUNIT MITOCHONDRIAL
TOMLINS PROSTATE CANCER UP
PARENT MTOR SIGNALING UP
REACTOME TRANSCRIPTIONRRN3, GTF3C5, CSTF2, UPF3B, POLR2L, UBTF, POLR2I, GTF3C4, CCNH, WHSC2, POLR2B, NCBP2, TFAM, MNAT1, POLR2J, TFB2M, POLR2E, POLR3H, POLR2F, NFX1, CPSF1, CPSF3, HIST1H4I, NFIC, U2AF1, GTF2H4, CSTF1, HIST2H2BE
NCI FORMATION OF ATP BY CHEMIOSMOTIC COUPLING
NIKOLSKY BREAST CANCER 16P13 AMPLICON
KAAB HEART ATRIUM VS VENTRICLE DN
NCI MICRORNA MIRNA BIOGENESIS
MOOTHA PGC
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
ehrlichia chaffeensis wakullalactobacillus acidophilusbifidobacterium bifidumGeneSet Name
-0.14549 -0.00167 -0.00179DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP
-0.17569 -0.00129 -0.00072ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP
-0.15883 -0.00229 -0.00101GOLDRATH_HOMEOSTATIC_PROLIFERATION
-0.00040 -0.00014 -0.00015REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE
-0.17600 -0.00034 -0.00001WELCSH_BRCA1_TARGETS_1_DN
-0.00001 -0.00100 -0.00019REACTOME_CITRIC_ACID_CYCLE
-0.17507 -0.01636 -0.13957CORUM_TERF2-RAP1_COMPLEX
-0.14188 -0.00218 -0.01929KEGG_CYSTEINE_AND_METHIONINE_METABOLISM
-0.00032 -0.01423 -0.00447NCI_CITRIC_ACID_CYCLE__TCA_CYCLE_
-0.00321 -0.00562 -0.01168REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION
-0.09174 -0.00009 -0.00639KIM_MYC_AMPLIFICATION_TARGETS_UP
-0.18257 -0.02390 -0.01972NCI_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE
-0.17995 -0.02698 -0.01963NCI_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE1
-0.19991 -0.01390 -0.05645NCI_TAT_MEDIATED_ELONGATION_OF_THE_HIV_1_TRANSCRIPT
-0.03021 -0.14634 -0.04912BIOCARTA_KREB_PATHWAY
-0.17614 -0.03335 -0.02460REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE
-0.00003 -0.04076 -0.16333REACTOME_BRANCHED_CHAIN_AMINO_ACID_CATABOLISM
-0.00317 -0.00110 -0.00423STEIN_ESRRA_TARGETS
-0.17325 -0.00263 -0.00855REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.00096 -0.00884 -0.10805REACTOME_PEROXISOMAL_LIPID_METABOLISM
-0.00052 -0.07899 -0.00390CORUM_F1F0-ATP_SYNTHASE_EC_3.6.3.14_MITOCHONDRIAL
-0.17629 -0.00091 -0.00079REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION
-0.00189 -0.04785 -0.15181YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_10
-0.07621 -0.00200 -0.00444NCI_FORMATION_OF_THE_HIV_1_EARLY_ELONGATION_COMPLEX
-0.17592 -0.03434 -0.00585KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS
-0.11563 -0.01397 -0.00908NCI_MRNA_CAPPING
-0.07607 -0.00230 -0.00434NCI_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX
-0.00241 -0.08784 -0.07070CORUM_RESPIRATORY_CHAIN_COMPLEX_I_GAMMA_SUBUNIT_MITOCHONDRIAL
-0.00027 -0.01320 -0.06641KEGG_BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS
-0.14979 -0.13268 -0.09523CORUM_OLIGOSACCHARYLTRANSFERASE_OSTC-I
-0.17525 -0.00937 -0.04172NCI_RNA_POLYMERASE_II_TRANSCRIPTION_ELONGATION
-0.00575 -0.00604 -0.06933REACTOME_CHOLESTEROL_BIOSYNTHESIS
-0.00013 -0.08618 -0.00556REACTOME_FORMATION_OF_ATP_BY_CHEMIOSMOTIC_COUPLING
-0.00137 -0.00020 -0.00785STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN
-0.07875 -0.00177 -0.00484NCI_HIV_1_TRANSCRIPTION_ELONGATION
-0.07924 -0.00352 -0.00700REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX
-0.05530 -0.15195 -0.18106NCI_BETA_OXIDATION_OF_DECANOYL_COA_TO_OCTANOYL_COA_COA
-0.00697 -0.08505 -0.10799CORUM_RESPIRATORY_CHAIN_COMPLEX_I_EARLY_INTERMEDIATE_NDUFAF1_ASSEMBLY_MITOCHONDRIAL
-0.00028 -0.00963 -0.00264MOOTHA_TCA
-0.14676 -0.00869 -0.03232NCI_FORMATION_OF_HIV_1_ELONGATION_COMPLEX_CONTAINING_HIV_1_TAT
-0.00088 -0.03113 -0.02293CORUM_RESPIRATORY_CHAIN_COMPLEX_I_INCOMPLETE_INTERMEDIATE_MITOCHONDRIAL
-0.00791 -0.00058 -0.00314RAMALHO_STEMNESS_UP
-0.15785 -0.05384 -0.10352CORUM_WRN-KU70-KU80-PARP1_COMPLEX
-0.19461 -0.00045 -0.00039REACTOME_GENE_EXPRESSION
-0.05075 -0.00617 -0.01617YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13
-0.17476 -0.00959 -0.03789NCI_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX_
-0.18110 -0.12977 -0.04977BOYAULT_LIVER_CANCER_SUBCLASS_G12_UP
-0.00005 -0.01687 -0.00893CORUM_RESPIRATORY_CHAIN_COMPLEX_I_BETA_SUBUNIT_MITOCHONDRIAL
-0.09041 -0.11183 -0.10735CORUM_OLIGOSACCHARYLTRANSFERASE_OSTC-III
-0.16782 -0.00041 -0.00181REACTOME_MICRORNA_BIOGENESIS
-0.13057 -0.11023 -0.16280LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN
-0.05059 -0.15609 -0.17278NCI_BETA_OXIDATION_OF_OCTANOYL_COA_TO_HEXANOYL_COA
-0.00129 -0.04967 -0.07164REACTOME_DIABETES_PATHWAYS
-0.00013 -0.00073 -0.00248STEIN_ESRRA_TARGETS_UP
-0.15855 -0.00216 -0.02979CORUM_RAP1_COMPLEX
-0.15790 -0.01528 -0.04881HU_ANGIOGENESIS_DN
-0.17402 -0.00164 -0.00745NCI_ABORTIVE_ELONGATION_OF_HIV_1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.03405 -0.05507 -0.12295NCI_PROPIONYL_COA_CATABOLISM
-0.01136 -0.08262 -0.11884REACTOME_VITAMIN_B5_(PANTOTHENATE)_METABOLISM
-0.07297 -0.00001 -0.00528PENG_RAPAMYCIN_RESPONSE_DN
-0.03620 -0.02371 -0.06510RICKMAN_METASTASIS_UP
-0.11351 -0.00334 -0.02164KEGG_N_GLYCAN_BIOSYNTHESIS
-0.00073 -0.01714 -0.01698CORUM_RESPIRATORY_CHAIN_COMPLEX_I_LAMBDA_SUBUNIT_MITOCHONDRIAL
-0.15015 -0.00809 -0.01125SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY
-0.06372 -0.08398 -0.08101BLALOCK_ALZHEIMERS_DISEASE_DN
-0.14824 -0.01044 -0.03851REACTOME_HIV1_TRANSCRIPTION_ELONGATION
-0.15845 -0.12605 -0.10075CORUM_OLIGOSACCHARYLTRANSFERASE_OSTC-II
-0.00244 -0.00491 -0.01068NCI_MITOCHONDRIAL_TRNA_AMINOACYLATION
-0.00003 -0.06189 -0.12411ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN
-0.00012 -0.00010 -0.00524CORUM_28S_RIBOSOMAL_SUBUNIT_MITOCHONDRIAL
-0.14305 -0.13354 -0.01698TOMLINS_PROSTATE_CANCER_UP
-0.02177 -0.08523 -0.08501PARENT_MTOR_SIGNALING_UP
-0.17599 -0.00045 -0.00087REACTOME_TRANSCRIPTION
-0.00018 -0.08124 -0.00693NCI_FORMATION_OF_ATP_BY_CHEMIOSMOTIC_COUPLING
-0.10921 -0.00423 -0.01522NIKOLSKY_BREAST_CANCER_16P13_AMPLICON
-0.00004 -0.00924 -0.11499KAAB_HEART_ATRIUM_VS_VENTRICLE_DN
-0.17166 -0.00152 -0.00706NCI_MICRORNA__MIRNA__BIOGENESIS
-0.00018 -0.01653 -0.06925MOOTHA_PGC