BICLUSTER_ID : DNREG-194
PATHOGENS /4/ : pseudomonas aeruginosa,escherichia coli,lactobacillus acidophilus,porphyromonas gingivalis
TARGETS /3/ : MCM7, DUT, RRM1
Gene SetLeading Edge Genes
KAUFFMANN DNA REPAIR GENESCHAF1B, XRCC1, TOP2B, MLH1, MUTYH, TDP1, RRM1, RAD50, RFC4, H2AFX, POLD1, TOP2A, TOPBP1, RFC5, DUT, RECQL4, UNG, PMS1, XPC, MRE11A, NEIL3
REACTOME MITOTIC M M G1 PHASESKIF20A, MCM3, CENPC1, MCM5, NUP37, MCM7, CENPF, KIF2C, BIRC5, NDE1
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
REACTOME LAGGING STRAND SYNTHESIS
NAKAYAMA SOFT TISSUE TUMORS PCA2 UP
CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 UPKIF20A, PRC1, CENPF, CCNB1, BIRC5
BENPORATH CYCLING GENES
REACTOME CELL CYCLE CHECKPOINTS
KUMAMOTO RESPONSE TO NUTLIN 3A DN
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
KAUFFMANN DNA REPLICATION GENES
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITS
PRAMOONJAGO SOX4 TARGETS DN
REACTOME NUCLEOTIDE EXCISION REPAIRXPC, POLE, RFC4, POLD1, ERCC5, RFC5
NCI GLOBAL GENOMIC NER GG NER
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
REACTOME CENTROSOME MATURATION
REACTOME GLOBAL GENOMIC NERPOLD1
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NER
REACTOME DNA STRAND ELONGATIONMCM3, RFC4, MCM5, POLD1
NCI E2F TRANSCRIPTIONAL TARGETS AT G1 S
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
REACTOME G2 M TRANSITION
KAUFFMANN MELANOMA RELAPSE UP
REACTOME EXTENSION OF TELOMERES
STEIN ESRRA TARGETS RESPONSIVE TO ESTROGEN DN
KEGG DNA REPLICATIONMCM3, RFC4, MCM5, POLD1
REACTOME TRANSCRIPTION COUPLED NERPOLE, RFC4, POLD1, RFC5
NCI RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES
BIDUS METASTASIS UP
MORI MATURE B LYMPHOCYTE DN
NCI LEADING STRAND SYNTHESIS
NCI MITOTIC PROMETAPHASECENPC1, MLF1IP, NUP37, KIF2C, BIRC5, NDE1
BIOCARTA MCM PATHWAY
REACTOME BASE EXCISION REPAIR
REACTOME REMOVAL OF THE FLAP INTERMEDIATE
NCI DUAL INCISION REACTION IN GG NER
FERREIRA EWINGS SARCOMA UNSTABLE VS STABLE UP
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
REACTOME G1 S TRANSITION
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITS
NCI UNWINDING OF DNA
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
REACTOME S PHASE
NCI FORMATION OF INCISION COMPLEX IN GG NER
KEGG CELL CYCLE
KEGG BASE EXCISION REPAIR
TANG SENESCENCE TP53 TARGETS DN
NCI PROCESSIVE SYNTHESIS ON THE C STRAND OF THE TELOMERE
REACTOME SYNTHESIS OF DNA
REACTOME DUAL INCISION REACTION IN GG NER
REACTOME UNWINDING OF DNA
CORUM DNA SYNTHESOME CORE COMPLEX
CORUM MCM COMPLEX
SONG TARGETS OF IE86 CMV PROTEIN
KEGG NUCLEOTIDE EXCISION REPAIRXPC, POLE, RFC4, ERCC5, POLD1, RFC5
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
lactobacillus acidophiluspseudomonas aeruginosa fdr440porphyromonas gingivalisescherichia coliGeneSet Name
-0.00009 -0.00283 -0.03015 -0.00003KAUFFMANN_DNA_REPAIR_GENES
-0.00004 -0.16003 -0.00012 -0.00211REACTOME_MITOTIC_M_M_G1_PHASES
-0.00228 -0.01150 -0.09697 -0.03239CORUM_DNA_SYNTHESOME_COMPLEX_15_SUBUNITS
-0.00399 -0.03053 -0.04312 -0.00360REACTOME_LAGGING_STRAND_SYNTHESIS
-0.00004 -0.17816 -0.12871 -0.09205NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP
-0.00001 -0.01049 -0.02686 -0.01416CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP
-0.00012 -0.04557 -0.13199 -0.00035BENPORATH_CYCLING_GENES
-0.00613 -0.08869 -0.00004 -0.03627REACTOME_CELL_CYCLE_CHECKPOINTS
-0.00892 -0.04882 -0.07522 -0.00055KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.00287 -0.11126 -0.10690 -0.00115REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE
-0.00161 -0.07064 -0.17966 -0.04398KAUFFMANN_DNA_REPLICATION_GENES
-0.00058 -0.03113 -0.10704 -0.01981CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.01315 -0.12778 -0.15277 -0.00641PRAMOONJAGO_SOX4_TARGETS_DN
-0.00033 -0.00513 -0.00069 -0.00018REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.04065 -0.00759 -0.10681 -0.01173NCI_GLOBAL_GENOMIC_NER__GG_NER_
-0.03589 -0.07563 -0.04140 -0.14204NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.09600 -0.02273 -0.00441 -0.00057REACTOME_CENTROSOME_MATURATION
-0.00101 -0.00065 -0.00963 -0.00018REACTOME_GLOBAL_GENOMIC_NER
-0.00254 -0.12007 -0.10445 -0.00127NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.00004 -0.00002 -0.01190 -0.00005REACTOME_DNA_STRAND_ELONGATION
-0.01184 -0.14244 -0.14943 -0.18074NCI_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S
-0.06171 -0.14858 -0.07138 -0.05317RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.00886 -0.05225 -0.00453 -0.00142REACTOME_G2_M_TRANSITION
-0.00009 -0.00001 -0.09763 -0.00005KAUFFMANN_MELANOMA_RELAPSE_UP
-0.00033 -0.06304 -0.04101 -0.00295REACTOME_EXTENSION_OF_TELOMERES
-0.00078 -0.00006 -0.18586 -0.02462STEIN_ESRRA_TARGETS_RESPONSIVE_TO_ESTROGEN_DN
-0.00001 -0.00014 -0.01633 -0.00035KEGG_DNA_REPLICATION
-0.00076 -0.01975 -0.00087 -0.00131REACTOME_TRANSCRIPTION_COUPLED_NER
-0.12679 -0.05089 -0.01427 -0.00253NCI_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES
-0.00036 -0.17970 -0.03629 -0.00302BIDUS_METASTASIS_UP
-0.05857 -0.06272 -0.15656 -0.10957MORI_MATURE_B_LYMPHOCYTE_DN
-0.06159 -0.19907 -0.09510 -0.14245NCI_LEADING_STRAND_SYNTHESIS
-0.00003 -0.17181 -0.02882 -0.00007NCI_MITOTIC_PROMETAPHASE
-0.00259 -0.00613 -0.16828 -0.00957BIOCARTA_MCM_PATHWAY
-0.01351 -0.13788 -0.06821 -0.00472REACTOME_BASE_EXCISION_REPAIR
-0.00820 -0.05993 -0.19225 -0.02198REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.04484 -0.00676 -0.10949 -0.01183NCI_DUAL_INCISION_REACTION_IN_GG_NER
-0.00030 -0.00810 -0.06682 -0.00253FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP
-0.01392 -0.07111 -0.00819 -0.01151ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN
-0.00092 -0.18368 -0.00005 -0.15306REACTOME_G1_S_TRANSITION
-0.00268 -0.09845 -0.05256 -0.03605CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.00096 -0.00281 -0.14377 -0.02928NCI_UNWINDING_OF_DNA
-0.06068 -0.19900 -0.08378 -0.14496NCI_TELOMERE_C_STRAND__LAGGING_STRAND__SYNTHESIS
-0.00243 -0.11166 -0.10699 -0.00130NCI_REPAIR_SYNTHESIS_OF_PATCH__27_30_BASES_LONG__BY_DNA_POLYMERASE
-0.00260 -0.01808 -0.00004 -0.17828REACTOME_S_PHASE
-0.04074 -0.00756 -0.11176 -0.01248NCI_FORMATION_OF_INCISION_COMPLEX_IN_GG_NER
-0.00055 -0.18558 -0.10582 -0.01211KEGG_CELL_CYCLE
-0.00130 -0.00163 -0.05239 -0.00057KEGG_BASE_EXCISION_REPAIR
-0.00887 -0.01255 -0.01342 -0.00033TANG_SENESCENCE_TP53_TARGETS_DN
-0.12089 -0.13015 -0.12875 -0.12833NCI_PROCESSIVE_SYNTHESIS_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.03098 -0.02563 -0.00002 -0.17829REACTOME_SYNTHESIS_OF_DNA
-0.03897 -0.00661 -0.10710 -0.01496REACTOME_DUAL_INCISION_REACTION_IN_GG_NER
-0.01181 -0.00308 -0.16817 -0.01773REACTOME_UNWINDING_OF_DNA
-0.03363 -0.16829 -0.10476 -0.09734CORUM_DNA_SYNTHESOME_CORE_COMPLEX
-0.00509 -0.03908 -0.16025 -0.08457CORUM_MCM_COMPLEX
-0.00393 -0.00237 -0.04075 -0.00020SONG_TARGETS_OF_IE86_CMV_PROTEIN
-0.00448 -0.00033 -0.00290 -0.00032KEGG_NUCLEOTIDE_EXCISION_REPAIR