BICLUSTER_ID : DNREG-204
PATHOGENS /5/ : listeria monocytogenes,escherichia coli,bifidobacterium bifidum,mycobacterium tuberculosis,burkholderia pseudomallei
TARGETS /3/ : MCM6, POLA1, APEX1
Gene SetLeading Edge Genes
WAKASUGI HAVE ZNF143 BINDING SITESAPEX1, MSH6, MSH2, TDP1, PMS1, MRE11A, MSH5, PRKDC, POLD1, GTF2H5, RAD1
NCI POLYMERASE SWITCHING ON THE C STRAND OF THE TELOMERERFC3, POLA1, RFC4, RFC1, POLD1, PRIM1
KALMA E2F1 TARGETSMCM6, RFC4, POLD1
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
NCI POLYMERASE SWITCHING
NCI REMOVAL OF THE FLAP INTERMEDIATERPA1, RPA3, POLD1, PRIM1
CORUM BRAFT COMPLEX
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASERPA1, RFC4, RPA3
NCI G1 S TRANSITION
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITSRPA1, TOP2B, PRIM1
NCI CELL CYCLE MITOTIC
PRAMOONJAGO SOX4 TARGETS DN
REACTOME NUCLEOTIDE EXCISION REPAIR
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
NCI REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRANDRPA1, RPA3, POLD1
NCI M G1 TRANSITION
REACTOME GLOBAL GENOMIC NER
REACTOME POLYMERASE SWITCHING
REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NERRPA1, RFC4, RPA3
NCI ASSEMBLY OF THE PRE REPLICATIVE COMPLEX
REACTOME TRANSCRIPTION COUPLED NERRPA1, RFC4, RFC1, RPA3, POLD1
NCI DNA REPLICATION PRE INITIATION
NCI DNA STRAND ELONGATION
NCI LEADING STRAND SYNTHESIS
BIOCARTA MCM PATHWAY
REACTOME REMOVAL OF THE FLAP INTERMEDIATERPA1, RPA3, POLD1, PRIM1
REACTOME BASE EXCISION REPAIR
KEGG MISMATCH REPAIRMSH6, RFC4, RPA1, MSH2, RFC1, RPA3, POLD1
CORUM NURD.1 COMPLEX
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITSRPA1, RFC1, TOP2B, PRIM1
NCI UNWINDING OF DNA
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASERPA1, RFC4, RPA3
KEGG BASE EXCISION REPAIR
KEGG VALINE LEUCINE AND ISOLEUCINE DEGRADATION
NCI LAGGING STRAND SYNTHESIS
NCI PROCESSIVE SYNTHESIS ON THE C STRAND OF THE TELOMERE
CORUM CONDENSIN I-PARP-1-XRCC1 COMPLEX
REACTOME UNWINDING OF DNA
CORUM MCM COMPLEX
CORUM DNA SYNTHESOME CORE COMPLEX
CORUM RC COMPLEX DURING S-PHASE OF CELL CYCLE
KEGG NUCLEOTIDE EXCISION REPAIR
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
burkholderia pseudomalleilisteria monocytogenesbifidobacterium bifidummycobacterium tuberculosisescherichia coliGeneSet Name
-0.01482 -0.08024 -0.00163 -0.02256 -0.00048WAKASUGI_HAVE_ZNF143_BINDING_SITES
-0.01932 -0.02020 -0.00070 -0.00770 -0.02772NCI_POLYMERASE_SWITCHING_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.00077 -0.04985 -0.00129 -0.00332 -0.01347KALMA_E2F1_TARGETS
-0.04316 -0.02183 -0.00018 -0.00225 -0.03239CORUM_DNA_SYNTHESOME_COMPLEX_15_SUBUNITS
-0.02540 -0.02160 -0.00062 -0.00891 -0.02406NCI_POLYMERASE_SWITCHING
-0.00092 -0.00452 -0.00016 -0.00519 -0.01344NCI_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.09411 -0.08859 -0.00947 -0.00140 -0.04154CORUM_BRAFT_COMPLEX
-0.00197 -0.02262 -0.00005 -0.00001 -0.00115REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE
-0.02482 -0.01928 -0.00038 -0.00070 -0.00032NCI_G1_S_TRANSITION
-0.00750 -0.04780 -0.00005 -0.00019 -0.01981CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.02522 -0.01943 -0.00033 -0.00066 -0.00032NCI_CELL_CYCLE__MITOTIC
-0.00016 -0.02089 -0.00435 -0.17262 -0.00641PRAMOONJAGO_SOX4_TARGETS_DN
-0.00208 -0.01266 -0.00004 -0.00034 -0.00018REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.08753 -0.01990 -0.00289 -0.12261 -0.14204NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.00049 -0.01732 -0.00157 -0.01384 -0.01225NCI_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND
-0.02675 -0.02110 -0.00029 -0.00050 -0.00055NCI_M_G1_TRANSITION
-0.01224 -0.02588 -0.00003 -0.00003 -0.00018REACTOME_GLOBAL_GENOMIC_NER
-0.02651 -0.01923 -0.00061 -0.00739 -0.02068REACTOME_POLYMERASE_SWITCHING
-0.00150 -0.01989 -0.00364 -0.02078 -0.04023REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND
-0.00243 -0.02240 -0.00006 -0.00004 -0.00127NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.02614 -0.01962 -0.00040 -0.00091 -0.00032NCI_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX
-0.00209 -0.02222 -0.00003 -0.00065 -0.00131REACTOME_TRANSCRIPTION_COUPLED_NER
-0.02540 -0.02246 -0.00033 -0.00064 -0.00036NCI_DNA_REPLICATION_PRE_INITIATION
-0.11392 -0.02949 -0.00813 -0.17893 -0.14663NCI_DNA_STRAND_ELONGATION
-0.10597 -0.02908 -0.00774 -0.16810 -0.14245NCI_LEADING_STRAND_SYNTHESIS
-0.00312 -0.03541 -0.00013 -0.01825 -0.00957BIOCARTA_MCM_PATHWAY
-0.00365 -0.00415 -0.00040 -0.01242 -0.02198REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.09416 -0.06598 -0.00624 -0.00241 -0.00472REACTOME_BASE_EXCISION_REPAIR
-0.00688 -0.03474 -0.00001 -0.00003 -0.00033KEGG_MISMATCH_REPAIR
-0.00626 -0.16375 -0.03507 -0.09239 -0.13590CORUM_NURD.1_COMPLEX
-0.01432 -0.04969 -0.00025 -0.00382 -0.03605CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.00072 -0.10298 -0.00503 -0.00261 -0.02928NCI_UNWINDING_OF_DNA
-0.10843 -0.02870 -0.00811 -0.18674 -0.14496NCI_TELOMERE_C_STRAND__LAGGING_STRAND__SYNTHESIS
-0.00235 -0.02184 -0.00006 -0.00004 -0.00130NCI_REPAIR_SYNTHESIS_OF_PATCH__27_30_BASES_LONG__BY_DNA_POLYMERASE
-0.00205 -0.01357 -0.00058 -0.00004 -0.00057KEGG_BASE_EXCISION_REPAIR
-0.12647 -0.02253 -0.01075 -0.04812 -0.00397KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION
-0.10650 -0.02931 -0.00776 -0.17198 -0.14565NCI_LAGGING_STRAND_SYNTHESIS
-0.16662 -0.05130 -0.03557 -0.18068 -0.12833NCI_PROCESSIVE_SYNTHESIS_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.00349 -0.07982 -0.01619 -0.07427 -0.01307CORUM_CONDENSIN_I-PARP-1-XRCC1_COMPLEX
-0.00279 -0.04460 -0.00453 -0.01783 -0.01773REACTOME_UNWINDING_OF_DNA
-0.00534 -0.04697 -0.00700 -0.01447 -0.08457CORUM_MCM_COMPLEX
-0.09978 -0.02836 -0.00321 -0.11714 -0.09734CORUM_DNA_SYNTHESOME_CORE_COMPLEX
-0.03038 -0.14934 -0.00007 -0.01273 -0.07633CORUM_RC_COMPLEX_DURING_S-PHASE_OF_CELL_CYCLE
-0.01443 -0.04478 -0.00238 -0.00038 -0.00032KEGG_NUCLEOTIDE_EXCISION_REPAIR