BICLUSTER_ID : DNREG-4
PATHOGENS /3/ : bifidobacterium bifidum,helicobacter pylori,burkholderia pseudomallei
TARGETS /50/ : NNT, MGST3, NDUFB8, CSNK1G2, AHCY, TUBB3, SDHA, IARS2, NDUFB5, NDUFS8, NDUFS1, BLVRA, SDHC, NDUFA8, UQCRC1, NDUFB7, NDUFA6, NDUFS6, APEX1, APRT, TUBB, BCAT2, NDUFS2, MCM6, PPIB, TK1, NDUFB2, SUCLG2, IDH3B, NDUFC1, HPRT1, IDH3G, RRM1, PPIC, NDUFA10, ATP1A1, NDUFA2, CYB5A, UCK2, ADA, PARP1, CSK, SDC2, IDH1, CYP51A1, NDUFA4, NDUFB6, HDAC2, DARS, DHCR7
Gene SetLeading Edge Genes
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN UPCSNK1G2, MRPL23, EI24, NDUFS8, DBI, APRT, TUBB, KIF22, ACYP1, PPIB, NDUFB11, RTN3, ATPIF1, MUTYH, NENF, NUDT3, ZDHHC13, ADA, SRF, FKBP2, VRK1, CDC20, CSK, TMC6, CYP51A1, DHCR7, ERH, KIF20A, PCK2, ATP5I, NDUFB8, AHCY, TUBB3, HMGB3, TOP2A, CENPF, UQCRC1, AES, MBD3, ATP5J2, BCAT2, UBE2C, PPA2, LSM4, MTA1, ARHGAP1, BANF1, EBP, HMBS, TCEB2, TAF10, RRM1, H2AFX, RPN1, ATP1A1, NDUFA2, HMGB1, PGLS, RPS6KB1, PARP1, SNRPD1, HDAC2, H2AFV, DARS, ARHGDIB
MOOTHA VOXPHOSBCS1L, ATP5I, ATP5C1, UQCR, NDUFB8, SDHA, ATP5H, NDUFB5, CYC1, NDUFS8, NDUFS1, CYB5A, SDHC, NDUFA8, UQCRC1, NDUFA6, NDUFS6, MBD3, ATP5G1, ATP5J2, NDUFA4, NDUFB6, ATP5E, NDUFS2, COX8A, ATP5B, NDUFB2, UQCRC2, NDUFC1
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UPSET, GPAA1, MAGOH, CETN2, MGST3, IARS2, SDF2L1, EXOSC5, BRP44, ICT1, HSPA14, SDHC, NDUFA8, BOLA1, LGTN, MCM3, RNASEH2A, TK1, PIGT, CNIH, ARL2BP, GOLT1B, CUEDC2, PPIC, GNPAT, SMC3, TMEM147, MCM4, NHP2L1, GMNN, MRPS17, CDC20, IDH1, NDUFB6, DNAJC9, PSME3, SUV39H1, RCN2, XRCC6, TSSC1, IMPAD1, IFRD2, RTCD1, AHCY, NRAS, DHX29, HTATSF1, UCHL5, BLVRA, MID1IP1, THAP11, NUSAP1, APEX1, WRB, PDIA6, CCT8, BCAT2, DDX46, CDR2, LSM4, SSR1, ZFAND1, ASPM, HPRT1, SLC35B1, CKAP4, H2AFX, RPA3, CCNA2, UCK2, MSH6, EIF2B1, PARP1, SDC2, PURA, ZMPSTE24, PRC1
CORUM RESPIRATORY CHAIN COMPLEX I HOLOENZYME MITOCHONDRIALNDUFA6, NDUFB7, NDUFB8, NDUFA4, NDUFB6, NDUFB2, NDUFA10, NDUFS8, NDUFS1, NDUFB11, NDUFA2, NDUFC1, NDUFA8
REACTOME CITRIC ACID CYCLENNT, SDHA, IDH3G, CS, ACO2, IDH2, SUCLG2, SDHC, IDH3B
CAFFAREL RESPONSE TO THC DNMCM6, CCNA2, EBP
REACTOME CELL CYCLE CHECKPOINTSBUB1B, CCNE1, CCNB2, MCM3, CDC20, MAD2L1, CDC25C, UBE2C, CDC6, CCNB1, ANAPC1, MCM6, PSME3, RPA3, RFC5
KEGG CITRATE CYCLE TCA CYCLE
KEGG RNA DEGRADATION
NCI CENTROSOME MATURATION
BIOCARTA KREB PATHWAY
BOYAULT LIVER CANCER SUBCLASS G123 UP
KUMAMOTO RESPONSE TO NUTLIN 3A DN
NCI RNA POLYMERASE II TRANSCRIPTION PRE INITIATION
JIANG VHL TARGETS
IVANOVA HEMATOPOIESIS INTERMEDIATE PROGENITOR
SANA RESPONSE TO IFNG DN
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NER
DIAZ CHRONIC MEYLOGENOUS LEUKEMIA UP
LIU SOX4 TARGETS DN
NCI AURORA A PATHWAY
YAGI AML WITH T 8 21 TRANSLOCATION
LINDGREN BLADDER CANCER WITH LOH IN CHR9Q
HONRADO BREAST CANCER BRCA1 VS BRCA2
ALCALA APOPTOSIS
REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES
PUJANA BREAST CANCER LIT INT NETWORK
KEGG MISMATCH REPAIR
KEGG GLYOXYLATE AND DICARBOXYLATE METABOLISM
REACTOME PYRUVATE METABOLISM AND TCA CYCLE
PUIFFE INVASION INHIBITED BY ASCITES UP
NCI MITOTIC METAPHASE ANAPHASE TRANSITION
REACTOME APCDC20 MEDIATED DEGRADATION OF CYCLIN B
SENESE HDAC3 TARGETS DN
ROSS AML WITH AML1 ETO FUSION
REACTOME SYNTHESIS OF DNA
KOKKINAKIS METHIONINE DEPRIVATION 48HR DN
MORI EMU MYC LYMPHOMA BY ONSET TIME UP
NCI BETA OXIDATION OF DECANOYL COA TO OCTANOYL COA COA
NCI RAC1 REG PATHWAY
SENGUPTA NASOPHARYNGEAL CARCINOMA UP
REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE
CORUM RESPIRATORY CHAIN COMPLEX I INCOMPLETE INTERMEDIATE MITOCHONDRIAL
BIOCARTA CELLCYCLE PATHWAY
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 11
REACTOME ELECTRON TRANSPORT CHAIN
WEST ADRENOCORTICAL TUMOR MARKERS UP
WAKASUGI HAVE ZNF143 BINDING SITES
ELVIDGE HYPOXIA DN
BOYAULT LIVER CANCER SUBCLASS G12 UP
BIOCARTA G1 PATHWAY
REACTOME POLYMERASE SWITCHING
LIANG HEMATOPOIESIS STEM CELL NUMBER LARGE VS TINY UP
NCI P53REGULATIONPATHWAY
BARIS THYROID CANCER DN
TOOKER GEMCITABINE RESISTANCE DN
NCI RNA POLYMERASE II TRANSCRIPTION INITIATION
HOSHIDA LIVER CANCER SUBCLASS S2
GRADE COLON AND RECTAL CANCER UP
CHEN HOXA5 TARGETS 9HR DN
NCI RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES
WAMUNYOKOLI OVARIAN CANCER LMP UP
KEGG N GLYCAN BIOSYNTHESIS
CORUM MECP1 COMPLEX
MORI MATURE B LYMPHOCYTE DN
GOLDRATH HOMEOSTATIC PROLIFERATION
LY AGING MIDDLE DN
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
REACTOME G1 S TRANSITION
BLALOCK ALZHEIMERS DISEASE DN
GRUETZMANN PANCREATIC CANCER DN
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
MOHANKUMAR TLX1 TARGETS UP
NCI APC C CDC20 MEDIATED DEGRADATION OF CYCLIN B
BIOCARTA AKAP95 PATHWAY
CORUM ALL-1 SUPERCOMPLEX
KIM WT1 TARGETS DN
NCI PAUSING AND RECOVERY OF HIV 1 ELONGATION
MUELLER COMMON TARGETS OF AML FUSIONS UP
PROVENZANI METASTASIS UP
REACTOME FORMATION AND MATURATION OF MRNA TRANSCRIPT
MOOTHA PGC
RICKMAN TUMOR DIFFERENTIATED MODERATELY VS POORLY UP
KEGG NUCLEOTIDE EXCISION REPAIR
NCI CITRIC ACID CYCLE TCA CYCLE
BENPORATH MYC MAX TARGETS
DANG REGULATED BY MYC UP
SEIDEN MET SIGNALING
DEBIASI APOPTOSIS BY REOVIRUS INFECTION DN
BORCZUK MALIGNANT MESOTHELIOMA UP
BHATTACHARYA EMBRYONIC STEM CELL
REACTOME RNA POLYMERASE II TRANSCRIPTION
MOOTHA HUMAN MITODB 6 2002
NCI PHOSPHORYLATION OF THE APC C
STEIN ESRRA TARGETS
VANTVEER BREAST CANCER POOR PROGNOSIS
OLSSON E2F3 TARGETS DN
REACTOME GLOBAL GENOMIC NER
NCI APC C CDC20 MEDIATED DEGRADATION OF MITOTIC PROTEINS
LOPEZ MBD TARGETS
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 10
HAHTOLA MYCOSIS FUNGOIDES CD4 DN
NCI LOSS OF PROTEINS REQUIRED FOR INTERPHASE MICROTUBULE ORGANIZATION FROM THE CENTROSOME
ONKEN UVEAL MELANOMA UP
REACTOME G2 M TRANSITION
SASAKI ADULT T CELL LEUKEMIA
BOYLAN MULTIPLE MYELOMA C CLUSTER UP
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 14
LOCKWOOD AMPLIFIED IN LUNG CANCER
MULLIGHAN MLL SIGNATURE 2 UP
NCI RNA POLYMERASE II TRANSCRIPTION
SEMBA FHIT TARGETS DN
NCI CHK1 CHK2 CDS1 MEDIATED INACTIVATION OF CYCLIN B CDK1 COMPLEX
REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING
MANN RESPONSE TO AMIFOSTINE DN
BIOCARTA MPR PATHWAY
KEGG PYRIMIDINE METABOLISM
NCI SMAD2 3PATHWAY
XU HGF SIGNALING NOT VIA AKT1 48HR DN
WILLIAMS ESR1 TARGETS UP
WATANABE RECTAL CANCER RADIOTHERAPY RESPONSIVE UP
IVANOVA HEMATOPOIESIS LATE PROGENITOR
TANG SENESCENCE TP53 TARGETS DN
PENG GLUTAMINE DEPRIVATION DN
CORUM PCNA-RFC2-5 COMPLEX
BIOCARTA RB PATHWAY
REACTOME TRANSFORMATION OF LANOSTEROL TO CHOLESTEROL
REACTOME DNA REPLICATION PRE INITIATION
NCI PAUSING AND RECOVERY OF TAT MEDIATED HIV 1 ELONGATION
REACTOME METABLISM OF NUCLEOTIDES
BIOCARTA P53 PATHWAY
NCI BARD1PATHWAY
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
AMUNDSON POOR SURVIVAL AFTER GAMMA RADIATION 2G
NCI POLYMERASE SWITCHING
RAMALHO STEMNESS UP
GEORGES CELL CYCLE MIR192 TARGETS
OHASHI AURKB TARGETS
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITS
KEGG PARKINSONS DISEASE
NCI ELONGATION OF INTRON CONTAINING TRANSCRIPTS AND CO TRANSCRIPTIONAL MRNA SPLICING
CORUM RESPIRATORY CHAIN COMPLEX I BETA SUBUNIT MITOCHONDRIAL
KEGG OOCYTE MEIOSIS
KEGG PROPANOATE METABOLISM
NCI APC CDC20 MEDIATED DEGRADATION OF NEK2A
DAIRKEE TERT TARGETS UP
MOOTHA MITOCHONDRIA
NCI RNA POLYMERASE II PROMOTER ESCAPE
CORUM RAP1 COMPLEX
STEIN ESRRA TARGETS UP
JAEGER METASTASIS UP
MULLIGHAN MLL SIGNATURE 1 UP
POMEROY MEDULLOBLASTOMA PROGNOSIS DN
MILI PSEUDOPODIA HAPTOTAXIS UP
WANG CISPLATIN RESPONSE AND XPC UP
HOLLMAN APOPTOSIS VIA CD40 UP
LASTOWSKA NEUROBLASTOMA COPY NUMBER UP
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
SHAFFER IRF4 TARGETS IN ACTIVATED DENDRITIC CELL
FAELT B CLL WITH VH REARRANGEMENTS DN
AGUIRRE PANCREATIC CANCER COPY NUMBER UP
REACTOME TRANSCRIPTION
NCI FORMATION OF ATP BY CHEMIOSMOTIC COUPLING
REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES
TOOKER RESPONSE TO BEXAROTENE UP
AGUIRRE PANCREATIC CANCER COPY NUMBER DN
CORUM MTA2 COMPLEX
GALE APL WITH FLT3 MUTATED UP
WILCOX PRESPONSE TO ROGESTERONE UP
LOPEZ MESOTELIOMA SURVIVAL TIME UP
NCI RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES
BIOCARTA P27 PATHWAY
HASLINGER B CLL WITH 17P13 DELETION
DANG BOUND BY MYC
MONTERO THYROID CANCER POOR SURVIVAL UP
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
THEILGAARD NEUTROPHIL AT SKIN WOUND DN
REACTOME NUCLEOTIDE EXCISION REPAIR
LY AGING OLD DN
REACTOME CENTROSOME MATURATION
CORUM F1F0-ATP SYNTHASE EC 3.6.3.14 MITOCHONDRIAL
CHOI ATL CHRONIC VS ACUTE DN
WONG MITOCHONDRIA GENE MODULE
ENK UV RESPONSE KERATINOCYTE DN
NCI AR PATHWAY
REACTOME GLUCOSE REGULATION OF INSULIN SECRETION
COLDREN GEFITINIB RESISTANCE UP
KEGG RNA POLYMERASE
CORUM RESPIRATORY CHAIN COMPLEX I GAMMA SUBUNIT MITOCHONDRIAL
CORUM CELL CYCLE KINASE COMPLEX CDC2
LIN APC TARGETS
PASQUALUCCI LYMPHOMA BY GC STAGE DN
REACTOME CHOLESTEROL BIOSYNTHESIS
STARK PREFRONTAL CORTEX 22Q11 DELETION DN
CHUANG OXIDATIVE STRESS RESPONSE DN
WELCSH BRCA1 TARGETS 1 UP
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITS
UDAYAKUMAR MED1 TARGETS UP
PENG LEUCINE DEPRIVATION DN
CORUM CENP-A NAC-CAD COMPLEX
WELCSH BRCA1 TARGETS 1 DN
CREIGHTON ENDOCRINE THERAPY RESISTANCE 1
PARK APL PATHOGENESIS DN
CORUM PCNA-CHL12-RFC2-5 COMPLEX
VALK AML CLUSTER 15
TOOKER GEMCITABINE RESISTANCE UP
CORUM EXOSOME
NCI FOXM1PATHWAY
LIN MELANOMA COPY NUMBER UP
KEGG COLORECTAL CANCER
LUI TARGETS OF PAX8 PPARG FUSION
RIZ ERYTHROID DIFFERENTIATION CCNE1
REACTOME LATE PHASE OF HIV LIFE CYCLE
YANG BREAST CANCER ESR1 LASER DN
GENTILE RESPONSE CLUSTER D3
NCI P38 MK2PATHWAY
CORUM RC COMPLEX REPLICATION COMPETENT COMPLEX
HAHTOLA MYCOSIS FUNGOIDES SKIN UP
TOOKER RESPONSE TO BEXAROTENE DN
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 13
KEGG OXIDATIVE PHOSPHORYLATION
CAFFAREL RESPONSE TO THC 24HR 5 UP
SHEN SMARCA2 TARGETS UP
REACTOME INTEGRATION OF ENERGY METABOLISM
SA REG CASCADE OF CYCLIN EXPR
REACTOME HIV1 TRANSCRIPTION INITIATION
BIOCARTA SKP2E2F PATHWAY
WANG LMO4 TARGETS UP
DAIRKEE CANCER PRONE RESPONSE BPA E2
GARY CD5 TARGETS DN
REACTOME DIABETES PATHWAYS
REACTOME METABOLISM OF MRNA
KRASNOSELSKAYA ILF3 TARGETS DN
SUNG METASTASIS STROMA DN
BIOCARTA SRCRPTP PATHWAY
NCI RNA POLYMERASE II HIV 1 PROMOTER ESCAPE
RAMASWAMY METASTASIS UP
REACTOME REGULATION OF INSULIN SECRETION
NCI PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA
HAMAI APOPTOSIS VIA TRAIL UP
SCHLOSSER MYC AND SERUM RESPONSE SYNERGY
IVANOVA HEMATOPOIESIS EARLY PROGENITOR
NCI E2F PATHWAY
ABRAHAM ALPC VS MULTIPLE MYELOMA DN
KEGG ALZHEIMERS DISEASE
KEGG BASE EXCISION REPAIR
NCI INACTIVATION OF APC C VIA DIRECT INHIBITION OF THE APC C COMPLEX
NCI PURINE BIOSYNTHESIS
NUYTTEN NIPP1 TARGETS DN
ACEVEDO LIVER CANCER UP
REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS
CORUM CDC2-CCNB1-CCNF COMPLEX
WAMUNYOKOLI OVARIAN CANCER GRADES 1 2 UP
CAIRO HEPATOBLASTOMA UP
REACTOME PHOSPHORYLATION OF THE APC
NCI HIV 1 TRANSCRIPTION INITIATION
ELVIDGE HYPOXIA BY DMOG DN
JAERVINEN AMPLIFIED IN LARYNGEAL CANCER
SCHLOSSER SERUM RESPONSE AUGMENTED BY MYC
GRADE COLON CANCER UP
JIANG HYPOXIA CANCER
KEGG HOMOLOGOUS RECOMBINATION
BOHN PRIMARY IMMUNODEFICIENCY SYNDROM UP
MMS MOUSE LYMPH HIGH 4HRS UP
REACTOME CONVERSION FROM APC CDC20 TO APC CDH1 IN LATE ANAPHASE
FLECHNER PBL KIDNEY TRANSPLANT REJECTED VS OK DN
NCI MITOTIC TELOPHASE CYTOKINESIS
SHEPARD BMYB TARGETS
ZHAN MULTIPLE MYELOMA SUBGROUPS
BASSO B LYMPHOCYTE NETWORK
REACTOME ABORTIVE ELONGATION OF HIV1 TRANSCRIPT IN THE ABSENCE OF TAT
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
CORUM H2AX COMPLEX I
WEIGEL OXIDATIVE STRESS BY TBH AND H2O2
KEGG PURINE METABOLISM
REACTOME DOUBLE STRAND BREAK REPAIR
REACTOME TRANSCRIPTION COUPLED NER
NAKAMURA CANCER MICROENVIRONMENT DN
CORUM CTCF-NUCLEOPHOSMIN-PARP-HIS-KPNA-LMNA-TOP COMPLEX
MORI SMALL PRE BII LYMPHOCYTE DN
CORUM NURD.1 COMPLEX
REACTOME INACTIVATION OF APC VIA DIRECT INHIBITION OF THE APCOMPLEX
SHEPARD CRUSH AND BURN MUTANT DN
KEGG VALINE LEUCINE AND ISOLEUCINE DEGRADATION
REACTOME CYCLIN A1 ASSOCIATED EVENTS DURING G2 M TRANSITION
CORUM CDC5L COMPLEX
SESTO RESPONSE TO UV C6
MARTINEZ RESPONSE TO TRABECTEDIN DN
REACTOME HIV INFECTION
NCI REGULATION OF APC C ACTIVATORS BETWEEN G1 S AND EARLY ANAPHASE
KAUFFMANN DNA REPAIR GENES
LOPEZ MBD TARGETS IMPRINTED AND X LINKED
FARMER BREAST CANCER APOCRINE VS BASAL
GEORGES TARGETS OF MIR192 AND MIR215
NCI TRANSFORMATION OF LANOSTEROL TO CHOLESTEROL
MOOTHA TCA
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 12
DING LUNG CANCER EXPRESSION BY COPY NUMBER
CORUM RC COMPLEX DURING G2/M-PHASE OF CELL CYCLE
PRAMOONJAGO SOX4 TARGETS DN
KEGG HUNTINGTONS DISEASE
REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION
LEE LIVER CANCER SURVIVAL DN
NCI BETA OXIDATION OF OCTANOYL COA TO HEXANOYL COA
CORUM 39S RIBOSOMAL SUBUNIT MITOCHONDRIAL
TARTE PLASMA CELL VS B LYMPHOCYTE UP
NCI ABORTIVE ELONGATION OF HIV 1 TRANSCRIPT IN THE ABSENCE OF TAT
LUI THYROID CANCER CLUSTER 3
HU ANGIOGENESIS DN
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
PENG RAPAMYCIN RESPONSE DN
NCI LOSS OF NLP FROM MITOTIC CENTROSOMES
REACTOME PURINE METABOLISM
NCI CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE
CORUM MI2/NURD COMPLEX
GRAHAM CML QUIESCENT VS NORMAL QUIESCENT UP
WEST ADRENOCORTICAL TUMOR UP
CORUM HDAC1-ASSOCIATED PROTEIN COMPLEX
CORUM RESPIRATORY CHAIN COMPLEX I LAMBDA SUBUNIT MITOCHONDRIAL
SHAFFER IRF4 TARGETS IN ACTIVATED B LYMPHOCYTE
YAGI AML WITH 11Q23 REARRANGED
NCI POLYMERASE SWITCHING ON THE C STRAND OF THE TELOMERE
AIYAR COBRA1 TARGETS DN
CORUM TLE1 COREPRESSOR COMPLEX MASH1 PROMOTER-COREPRESSOR COMPLEX
CORUM 55S RIBOSOME MITOCHONDRIALMRPS34, MRPL17, MRPL23, MRPL4, MRPL35, MRPL49, MRPL12, MRPL15, MRPS28, MRPS15, MRPL20, MRPS2, MRPL19, MRPS17, MRPL16, MRPL34, MRPS14, MRPL48
ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR DN
MOREAUX MULTIPLE MYELOMA BY TACI DN
BOYAULT LIVER CANCER SUBCLASS G3 UP
OUELLET CULTURED OVARIAN CANCER INVASIVE VS LMP UP
NCI FORMATION AND MATURATION OF MRNA TRANSCRIPT
CORUM SNF2H-COHESIN-NURD COMPLEX
NCI RNA POLYMERASE II TRANSCRIPTION INITIATION AND PROMOTER CLEARANCE
NCI HIV 1 TRANSCRIPTION PRE INITIATION
CROONQUIST NRAS VS STROMAL STIMULATION DN
KAAB HEART ATRIUM VS VENTRICLE DN
REACTOME HIV LIFE CYCLE
CORUM OLIGOSACCHARYLTRANSFERASE COMPLEX STT3B VARIANT
FLECHNER PBL KIDNEY TRANSPLANT OK VS DONOR UP
CORUM RC COMPLEX DURING S-PHASE OF CELL CYCLE
NCI TRANSCRIPTION OF THE HIV GENOME
KEGG PROGESTERONE MEDIATED OOCYTE MATURATION
LINDGREN BLADDER CANCER CLUSTER 1 DN
TIEN INTESTINE PROBIOTICS 6HR DN
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
helicobacter pylori kx2 npgecburkholderia pseudomalleibifidobacterium bifidumhelicobacter pylori kx1 npgecGeneSet Name
-0.00740 -0.00050 -0.00023 -0.00205SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP
-0.00217 -0.00001 -0.00001 -0.00036MOOTHA_VOXPHOS
-0.00489 -0.00532 -0.00072 -0.00733ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP
-0.00691 -0.00033 -0.00001 -0.00042CORUM_RESPIRATORY_CHAIN_COMPLEX_I_HOLOENZYME_MITOCHONDRIAL
-0.00139 -0.01561 -0.00019 -0.00062REACTOME_CITRIC_ACID_CYCLE
-0.00260 -0.00117 -0.00190 -0.00243CAFFAREL_RESPONSE_TO_THC_DN
-0.00003 -0.02029 -0.00026 -0.00086REACTOME_CELL_CYCLE_CHECKPOINTS
-0.00200 -0.00078 -0.00004 -0.00044KEGG_CITRATE_CYCLE_TCA_CYCLE
-0.12620 -0.00041 -0.02179 -0.19954KEGG_RNA_DEGRADATION
-0.02446 -0.11544 -0.08432 -0.00472NCI_CENTROSOME_MATURATION
-0.04111 -0.03157 -0.04912 -0.01510BIOCARTA_KREB_PATHWAY
-0.06351 -0.01299 -0.05508 -0.10257BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP
-0.04464 -0.00073 -0.02902 -0.08108KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.12419 -0.16631 -0.11756 -0.06155NCI_RNA_POLYMERASE_II_TRANSCRIPTION_PRE_INITIATION
-0.02661 -0.01575 -0.16000 -0.00773JIANG_VHL_TARGETS
-0.00463 -0.00001 -0.00031 -0.05506IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR
-0.00979 -0.02533 -0.02951 -0.00182SANA_RESPONSE_TO_IFNG_DN
-0.01553 -0.00243 -0.00006 -0.05413NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.00417 -0.00020 -0.00179 -0.00276DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP
-0.03961 -0.00269 -0.00259 -0.02931LIU_SOX4_TARGETS_DN
-0.00370 -0.02454 -0.07176 -0.01341NCI_AURORA_A_PATHWAY
-0.05103 -0.12664 -0.10731 -0.02492YAGI_AML_WITH_T_8_21_TRANSLOCATION
-0.11048 -0.08712 -0.01401 -0.06746LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q
-0.06442 -0.00426 -0.00791 -0.05999HONRADO_BREAST_CANCER_BRCA1_VS_BRCA2
-0.05111 -0.02350 -0.17859 -0.18508ALCALA_APOPTOSIS
-0.01955 -0.06128 -0.12803 -0.00303REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES
-0.02506 -0.00027 -0.00001 -0.15602PUJANA_BREAST_CANCER_LIT_INT_NETWORK
-0.02889 -0.00688 -0.00001 -0.06315KEGG_MISMATCH_REPAIR
-0.09811 -0.01013 -0.07077 -0.15364KEGG_GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM
-0.02802 -0.00054 -0.00015 -0.00470REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE
-0.03117 -0.00558 -0.05731 -0.04662PUIFFE_INVASION_INHIBITED_BY_ASCITES_UP
-0.15012 -0.07430 -0.05452 -0.08120NCI_MITOTIC_METAPHASE_ANAPHASE_TRANSITION
-0.00203 -0.02193 -0.02318 -0.00873REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B
-0.01982 -0.02330 -0.07778 -0.00236SENESE_HDAC3_TARGETS_DN
-0.06231 -0.14829 -0.10160 -0.01981ROSS_AML_WITH_AML1_ETO_FUSION
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-0.06812 -0.03350 -0.00061 -0.04838CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1
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-0.02976 -0.01448 -0.11384 -0.00506VALK_AML_CLUSTER_15
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-0.17593 -0.01716 -0.00077 -0.13509REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE
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-0.00634 -0.01592 -0.19899 -0.00460SHEN_SMARCA2_TARGETS_UP
-0.03792 -0.00518 -0.02481 -0.00853REACTOME_INTEGRATION_OF_ENERGY_METABOLISM
-0.00278 -0.04550 -0.00240 -0.00015SA_REG_CASCADE_OF_CYCLIN_EXPR
-0.14535 -0.14125 -0.10901 -0.06077REACTOME_HIV1_TRANSCRIPTION_INITIATION
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-0.04610 -0.04273 -0.07241 -0.02619WANG_LMO4_TARGETS_UP
-0.08130 -0.00046 -0.01068 -0.08393DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2
-0.04586 -0.07082 -0.00390 -0.10908GARY_CD5_TARGETS_DN
-0.04914 -0.04260 -0.07164 -0.02860REACTOME_DIABETES_PATHWAYS
-0.02056 -0.00005 -0.02950 -0.03539REACTOME_METABOLISM_OF_MRNA
-0.04250 -0.17804 -0.01818 -0.01726KRASNOSELSKAYA_ILF3_TARGETS_DN
-0.19459 -0.00768 -0.00038 -0.12730SUNG_METASTASIS_STROMA_DN
-0.00960 -0.15765 -0.04754 -0.01706BIOCARTA_SRCRPTP_PATHWAY
-0.02816 -0.15757 -0.10967 -0.00892NCI_RNA_POLYMERASE_II_HIV_1_PROMOTER_ESCAPE
-0.01430 -0.02146 -0.01728 -0.01300RAMASWAMY_METASTASIS_UP
-0.02830 -0.00728 -0.01366 -0.00940REACTOME_REGULATION_OF_INSULIN_SECRETION
-0.01014 -0.00316 -0.00077 -0.04685NCI_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.06785 -0.14876 -0.14367 -0.13654HAMAI_APOPTOSIS_VIA_TRAIL_UP
-0.14859 -0.00102 -0.01125 -0.11726SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY
-0.01795 -0.00830 -0.00059 -0.02525IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR
-0.03821 -0.00202 -0.00038 -0.06790NCI_E2F_PATHWAY
-0.06076 -0.00340 -0.04548 -0.09160ABRAHAM_ALPC_VS_MULTIPLE_MYELOMA_DN
-0.00500 -0.01165 -0.19680 -0.00047KEGG_ALZHEIMERS_DISEASE
-0.02205 -0.00205 -0.00058 -0.02953KEGG_BASE_EXCISION_REPAIR
-0.00238 -0.01195 -0.02067 -0.00776NCI_INACTIVATION_OF_APC_C_VIA_DIRECT_INHIBITION_OF_THE_APC_C_COMPLEX
-0.14940 -0.12061 -0.07728 -0.17760NCI_PURINE_BIOSYNTHESIS
-0.00740 -0.13553 -0.03076 -0.00278NUYTTEN_NIPP1_TARGETS_DN
-0.00904 -0.05501 -0.09489 -0.01628ACEVEDO_LIVER_CANCER_UP
-0.06882 -0.12665 -0.00003 -0.17878REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS
-0.15818 -0.05271 -0.13386 -0.15270CORUM_CDC2-CCNB1-CCNF_COMPLEX
-0.00596 -0.01896 -0.14730 -0.00277WAMUNYOKOLI_OVARIAN_CANCER_GRADES_1_2_UP
-0.00788 -0.08891 -0.01014 -0.00296CAIRO_HEPATOBLASTOMA_UP
-0.00137 -0.03217 -0.02560 -0.01002REACTOME_PHOSPHORYLATION_OF_THE_APC
-0.14680 -0.17717 -0.10797 -0.05991NCI_HIV_1_TRANSCRIPTION_INITIATION
-0.14020 -0.00330 -0.00066 -0.04336ELVIDGE_HYPOXIA_BY_DMOG_DN
-0.17917 -0.14063 -0.09529 -0.16027JAERVINEN_AMPLIFIED_IN_LARYNGEAL_CANCER
-0.01338 -0.10712 -0.14029 -0.01278SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC
-0.02622 -0.00534 -0.00153 -0.01467GRADE_COLON_CANCER_UP
-0.00238 -0.01791 -0.01818 -0.00082JIANG_HYPOXIA_CANCER
-0.08893 -0.03495 -0.00304 -0.10666KEGG_HOMOLOGOUS_RECOMBINATION
-0.10448 -0.00338 -0.06498 -0.04595BOHN_PRIMARY_IMMUNODEFICIENCY_SYNDROM_UP
-0.10060 -0.00940 -0.11777 -0.07224MMS_MOUSE_LYMPH_HIGH_4HRS_UP
-0.00389 -0.12226 -0.10159 -0.00954REACTOME_CONVERSION_FROM_APC_CDC20_TO_APC_CDH1_IN_LATE_ANAPHASE
-0.06367 -0.05090 -0.07721 -0.05577FLECHNER_PBL_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN
-0.14677 -0.06173 -0.03173 -0.10592NCI_MITOTIC_TELOPHASE__CYTOKINESIS
-0.09506 -0.00149 -0.00003 -0.19787SHEPARD_BMYB_TARGETS
-0.03354 -0.00011 -0.00071 -0.01414ZHAN_MULTIPLE_MYELOMA_SUBGROUPS
-0.01977 -0.00245 -0.00224 -0.05536BASSO_B_LYMPHOCYTE_NETWORK
-0.09746 -0.05182 -0.00855 -0.16690REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.05628 -0.08753 -0.00289 -0.03171NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.07047 -0.12440 -0.03448 -0.00479CORUM_H2AX_COMPLEX_I
-0.03686 -0.07699 -0.04136 -0.01508WEIGEL_OXIDATIVE_STRESS_BY_TBH_AND_H2O2
-0.18809 -0.02900 -0.00006 -0.16446KEGG_PURINE_METABOLISM
-0.04117 -0.02025 -0.00009 -0.11919REACTOME_DOUBLE_STRAND_BREAK_REPAIR
-0.12290 -0.00209 -0.00003 -0.06469REACTOME_TRANSCRIPTION_COUPLED_NER
-0.02590 -0.00017 -0.00018 -0.02848NAKAMURA_CANCER_MICROENVIRONMENT_DN
-0.06791 -0.04731 -0.11832 -0.02545CORUM_CTCF-NUCLEOPHOSMIN-PARP-HIS-KPNA-LMNA-TOP_COMPLEX
-0.15201 -0.10130 -0.00269 -0.14776MORI_SMALL_PRE_BII_LYMPHOCYTE_DN
-0.10959 -0.00626 -0.03507 -0.06702CORUM_NURD.1_COMPLEX
-0.00281 -0.01448 -0.02271 -0.00671REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX
-0.07577 -0.02242 -0.00019 -0.12253SHEPARD_CRUSH_AND_BURN_MUTANT_DN
-0.00079 -0.12647 -0.01075 -0.00054KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION
-0.00945 -0.02198 -0.00001 -0.05897REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION
-0.17570 -0.00218 -0.00725 -0.14856CORUM_CDC5L_COMPLEX
-0.00058 -0.04011 -0.00481 -0.00278SESTO_RESPONSE_TO_UV_C6
-0.12049 -0.01447 -0.00352 -0.07984MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN
-0.01247 -0.01885 -0.10346 -0.01636REACTOME_HIV_INFECTION
-0.00014 -0.01297 -0.00242 -0.00012NCI_REGULATION_OF_APC_C_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE
-0.09101 -0.00140 -0.00001 -0.06811KAUFFMANN_DNA_REPAIR_GENES
-0.05308 -0.01636 -0.03127 -0.13403LOPEZ_MBD_TARGETS_IMPRINTED_AND_X_LINKED
-0.03829 -0.18074 -0.15911 -0.01962FARMER_BREAST_CANCER_APOCRINE_VS_BASAL
-0.02831 -0.11512 -0.03758 -0.02663GEORGES_TARGETS_OF_MIR192_AND_MIR215
-0.00718 -0.11862 -0.00385 -0.00148NCI_TRANSFORMATION_OF_LANOSTEROL_TO_CHOLESTEROL
-0.00579 -0.04930 -0.00264 -0.00180MOOTHA_TCA
-0.00372 -0.00078 -0.05594 -0.00233YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_12
-0.07293 -0.13481 -0.07736 -0.14078DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER
-0.06224 -0.00378 -0.00028 -0.04330CORUM_RC_COMPLEX_DURING_G2/M-PHASE_OF_CELL_CYCLE
-0.02012 -0.00016 -0.00435 -0.02101PRAMOONJAGO_SOX4_TARGETS_DN
-0.00684 -0.00796 -0.00740 -0.00043KEGG_HUNTINGTONS_DISEASE
-0.00324 -0.10704 -0.05342 -0.01062REACTOME_MITOCHONDRIAL_FATTY_ACID_BETA_OXIDATION
-0.00657 -0.00069 -0.00053 -0.00959LEE_LIVER_CANCER_SURVIVAL_DN
-0.08934 -0.13468 -0.17278 -0.08527NCI_BETA_OXIDATION_OF_OCTANOYL_COA_TO_HEXANOYL_COA
-0.00388 -0.00252 -0.01715 -0.00209CORUM_39S_RIBOSOMAL_SUBUNIT_MITOCHONDRIAL
-0.00608 -0.00046 -0.07638 -0.00116TARTE_PLASMA_CELL_VS_B_LYMPHOCYTE_UP
-0.07079 -0.10211 -0.00745 -0.19499NCI_ABORTIVE_ELONGATION_OF_HIV_1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.03580 -0.07686 -0.09579 -0.11707LUI_THYROID_CANCER_CLUSTER_3
-0.04247 -0.00025 -0.04881 -0.01004HU_ANGIOGENESIS_DN
-0.04603 -0.01642 -0.02139 -0.03512RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.00410 -0.05111 -0.00528 -0.00480PENG_RAPAMYCIN_RESPONSE_DN
-0.02233 -0.10973 -0.08105 -0.00485NCI_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES
-0.10052 -0.05198 -0.00485 -0.11720REACTOME_PURINE_METABOLISM
-0.00265 -0.09825 -0.09131 -0.00949NCI_CONVERSION_FROM_APC_C_CDC20_TO_APC_C_CDH1_IN_LATE_ANAPHASE
-0.14691 -0.00646 -0.06688 -0.12480CORUM_MI2/NURD_COMPLEX
-0.05664 -0.00019 -0.00240 -0.04600GRAHAM_CML_QUIESCENT_VS_NORMAL_QUIESCENT_UP
-0.00769 -0.00115 -0.00673 -0.00298WEST_ADRENOCORTICAL_TUMOR_UP
-0.12077 -0.17240 -0.18476 -0.17506CORUM_HDAC1-ASSOCIATED_PROTEIN_COMPLEX
-0.07120 -0.04865 -0.01698 -0.02202CORUM_RESPIRATORY_CHAIN_COMPLEX_I_LAMBDA_SUBUNIT_MITOCHONDRIAL
-0.08936 -0.00512 -0.02003 -0.15335SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE
-0.15025 -0.08020 -0.11675 -0.05575YAGI_AML_WITH_11Q23_REARRANGED
-0.03917 -0.01932 -0.00070 -0.01227NCI_POLYMERASE_SWITCHING_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.04999 -0.02689 -0.18650 -0.05945AIYAR_COBRA1_TARGETS_DN
-0.08716 -0.00603 -0.01559 -0.14118CORUM_TLE1_COREPRESSOR_COMPLEX_MASH1_PROMOTER-COREPRESSOR_COMPLEX
-0.00120 -0.00318 -0.00050 -0.00234CORUM_55S_RIBOSOME_MITOCHONDRIAL
-0.04457 -0.10305 -0.12411 -0.01327ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN
-0.10216 -0.00204 -0.00105 -0.04602MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.02713 -0.00012 -0.00018 -0.00563BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP
-0.00920 -0.03184 -0.15117 -0.01296OUELLET_CULTURED_OVARIAN_CANCER_INVASIVE_VS_LMP_UP
-0.03064 -0.16288 -0.10636 -0.00831NCI_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT
-0.04797 -0.00350 -0.08176 -0.17200CORUM_SNF2H-COHESIN-NURD_COMPLEX
-0.03255 -0.16667 -0.11008 -0.00979NCI_RNA_POLYMERASE_II_TRANSCRIPTION_INITIATION_AND_PROMOTER_CLEARANCE
-0.13001 -0.16173 -0.10634 -0.05797NCI_HIV_1_TRANSCRIPTION_PRE_INITIATION
-0.05310 -0.00564 -0.00701 -0.07948CROONQUIST_NRAS_VS_STROMAL_STIMULATION_DN
-0.05248 -0.15294 -0.11499 -0.01535KAAB_HEART_ATRIUM_VS_VENTRICLE_DN
-0.17563 -0.00484 -0.00038 -0.16079REACTOME_HIV_LIFE_CYCLE
-0.11704 -0.12333 -0.15048 -0.06947CORUM_OLIGOSACCHARYLTRANSFERASE_COMPLEX_STT3B_VARIANT
-0.02761 -0.04669 -0.17773 -0.04012FLECHNER_PBL_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP
-0.08118 -0.03038 -0.00007 -0.03156CORUM_RC_COMPLEX_DURING_S-PHASE_OF_CELL_CYCLE
-0.13089 -0.16515 -0.11471 -0.05922NCI_TRANSCRIPTION_OF_THE_HIV_GENOME
-0.00440 -0.09261 -0.02276 -0.00302KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION
-0.03135 -0.00146 -0.00138 -0.01175LINDGREN_BLADDER_CANCER_CLUSTER_1_DN
-0.02017 -0.02811 -0.05793 -0.02084TIEN_INTESTINE_PROBIOTICS_6HR_DN