BICLUSTER_ID : DNREG-70
PATHOGENS /3/ : pseudomonas aeruginosa,porphyromonas gingivalis,helicobacter pylori
TARGETS /23/ : SQLE, HMGCR, CAD, LTA4H, ALDH7A1, PSMB1, CDK4, RRM1, ADSL, ALDH9A1, CANX, PCCB, GMPS, PYCRL, ACAT2, CPT1A, HADH, SLC25A5, SUCLG1, GLO1, NDUFS2, LIG1, DARS2
Gene SetLeading Edge Genes
RHEIN ALL GLUCOCORTICOID THERAPY DNPRDX6, SET, PCNA, INTS8, CETN2, MLF1IP, PRPS2, STMN1, CDK4, BZW2, ADSL, CANX, TOP2A, GMPS, CCT8, TUFM, GDI2, TMEM135, RAD51, RAB13, DPYSL2, LTA4H, MYH10, RRM1, CCNG1, HMMR, ACAA2, PCCB, NUDT1, HADH, POLE2, GLO1, PRDX3, PRC1, MRPS35, ATP5L, BIRC5
WONG EMBRYONIC STEM CELL COREKIF20A, SQLE, YAP1, PCNA, ALDH7A1, EXOSC7, CDK4, CTNNA1, IPO9, ADSL, PPM1G, PSMA7, RPS19, KIF4A, MCM3, ECHS1, HADH, SLC25A5, CCT5, EBNA1BP2, GLO1, NDUFS2, DARS2, DPP3, BIRC5, TIMM8B
PUJANA CHEK2 PCC NETWORKESPL1, PCNA, POLE3, HMGCR, GTF3A, TMPO, YBX1, CCNB1, ADSL, RFC5, TFDP2, CENPF, CNOT1, TOE1, MCM3, EXOSC8, ATP5S, GMPS, CCT8, CPT1A, NUP88, LIG1, COPS3, DDX46, LMNB2, NUP205, CENPC1, CAD, KIFC1, CDC45L, PSMD9, HMMR, TTF1, ACAT2, CCNE2, SLC25A5, PFDN6, MRE11A, PRDX3, H2AFV, IDI1, IFT20, KIF2C
LINDGREN BLADDER CANCER CLUSTER 3 UPPCNA, CSTF2, KIFC1, TMPO, PRPS2, CCNB1, POLDIP2, STMN1, ALDH9A1, CENPF, DBI, KIF4A, TOM1L1, PTPLB, SUCLG1, GLO1, RAD51, LIG1, PRC1, TACC3, ARRB2, BIRC5
REACTOME CELL CYCLE MITOTICKIF20A, PSMC5, PCNA, CENPC1, CDK5RAP2, CETN2, CCNB1, AZI1, CDK4, PSMB1, PRKACA, PSMD9, PSMD4, TSGA14, RFC5, CENPF, NUP85, PSMA7, MCM3, CDC25C, CCNE2, LIG1, POLE, ODF2, KIF2C, NDE1, BIRC5
MISSIAGLIA REGULATED BY METHYLATION DNESPL1, LIG1, CAD, GMPS, KIFC1, CDC25C, HMGB1
NUYTTEN EZH2 TARGETS DNKIF20A, TMPO, PRPS2, CCNB1, PBK, TSGA14, RFC5, TOPBP1, CENPF, CNOT1, SP3, EXOSC8, PYCRL, ANTXR1, MRP63, NUP88, YWHAQ, RAD51, ETV4, RAB13, HMBS, CDK5RAP2, CAD, CASP6, MUTYH, KIFC1, FCHO1, ABCC5, FANCG, PRR11, AZI1, MDFIC, H2AFX, HMMR, HMGB1, KIF4A, HP1BP3, AP2B1, CDC25C, CCNE2, WIPI2, H2AFV, PRC1, IDI1, MRPS35, KIF2C, NDE1, BIRC5, SRPRB
FOURNIER ACINAR DEVELOPMENT LATE 2SQLE, CAD, POLE3, GNB1, TMPO, CDC45L, ITGA3, GLT25D1, PRPS1, PARP2, KIF4A, MCM3, EXOSC8, MBNL1, PRDX3, H2AFV, PRC1, IDI1, ETV4, NUP205, KIF2C, HMBS, BIRC5
WHITEFORD PEDIATRIC CANCER MARKERSTWIST1, ESPL1, PCNA, NUDT1, TMPO, CCNB1, CDK4, STMN1, PRC1, H2AFX, LMNB2, MFN2, CENPF, BIRC5
SOTIRIOU BREAST CANCER GRADE 1 VS 3 UPKIF20A, ESPL1, KIFC1, CDC45L, CCNB1, STMN1, HMMR, PSMA7, KIF4A, MCM3, GMPS, NUDT1, CCNE2, PFDN6, CCT5, RAD51, PRC1, BIRC5
BLUM RESPONSE TO SALIRASIB DNPXMP2, KIF20A, ESPL1, PCNA, TOP2B, TMPO, CDC45L, PBK, HMMR, RFC5, CENPF, KIF4A, MCM3, CCNE2, RAD51, PRDX3, LIG1, MRE11A, CHST12, PRC1
REACTOME LAGGING STRAND SYNTHESIS
NAKAYAMA SOFT TISSUE TUMORS PCA2 UP
NCI CENTROSOME MATURATION
GRAHAM CML DIVIDING VS NORMAL QUIESCENT UP
LI WILMS TUMOR VS FETAL KIDNEY 1 DN
MITSIADES RESPONSE TO APLIDIN DN
PUJANA BRCA2 PCC NETWORK
REACTOME CELL CYCLE CHECKPOINTSPSMC5, MCM3, PSMD9, CDC25C, CCNE2, PSMA7, CCNB1
KUMAMOTO RESPONSE TO NUTLIN 3A DN
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
LEE EARLY T LYMPHOCYTE UPKIF20A, PRC1, HMMR, MLF1IP, TFDP2, KIF2C, CCNB1, BIRC5
HORIUCHI WTAP TARGETS DN
ODONNELL TARGETS OF MYC AND TFRC DN
MOLENAAR TARGETS OF CCND1 AND CDK4 DN
REACTOME NUCLEOTIDE EXCISION REPAIR
ZHAN MULTIPLE MYELOMA PR UP
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
REACTOME CENTROSOME MATURATIONCDK5RAP2, CETN2, CCNB1, AZI1, PRKACA, TSGA14, ODF2, NDE1
ODONNELL TFRC TARGETS DN
REACTOME GLOBAL GENOMIC NER
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NER
FRASOR RESPONSE TO SERM OR FULVESTRANT DN
MARKEY RB1 ACUTE LOF DN
NCI LOSS OF PROTEINS REQUIRED FOR INTERPHASE MICROTUBULE ORGANIZATION FROM THE CENTROSOME
REACTOME METABOLISM OF PROTEINS
REACTOME G2 M TRANSITIONPRKACA, ODF2, CDC25C, CCNB1, NDE1, AZI1
KAUFFMANN MELANOMA RELAPSE UP
KEGG DNA REPLICATION
REACTOME DOUBLE STRAND BREAK REPAIR
REACTOME TRANSCRIPTION COUPLED NER
REN BOUND BY E2F
CASORELLI ACUTE PROMYELOCYTIC LEUKEMIA DN
NCI MITOTIC PROMETAPHASECENPC1, MLF1IP, ZWINT, KIF2C, NDE1, BIRC5
KOBAYASHI EGFR SIGNALING 24HR DN
CROONQUIST NRAS SIGNALING DN
REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES
MANN RESPONSE TO AMIFOSTINE DN
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITS
REACTOME DNA REPAIR
KANG DOXORUBICIN RESISTANCE UPKIF4A, FOXM1, PBK, PRC1, HMMR, ZWINT, BIRC5
TANG SENESCENCE TP53 TARGETS DN
REACTOME SYNTHESIS OF DNA
SHEDDEN LUNG CANCER POOR SURVIVAL A6
KAUFFMANN DNA REPAIR GENES
NCI BARD1PATHWAY
MOOTHA VOXPHOS
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 UP
PUJANA XPRSS INT NETWORK
BENPORATH CYCLING GENES
REACTOME ELECTRON TRANSPORT CHAIN
MORI IMMATURE B LYMPHOCYTE DN
KAUFFMANN DNA REPLICATION GENES
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITS
PRAMOONJAGO SOX4 TARGETS DN
KEGG PARKINSONS DISEASE
REACTOME MITOTIC PROMETAPHASE
WINNEPENNINCKX MELANOMA METASTASIS UP
MUELLER PLURINET
TOYOTA TARGETS OF MIR34B AND MIR34C
MANALO HYPOXIA DN
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
ZHANG BREAST CANCER PROGENITORS UP
MOOTHA FFA OXYDATION
REACTOME EXTENSION OF TELOMERES
NCI LOSS OF NLP FROM MITOTIC CENTROSOMES
NCI RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXESPRKACA, CDK5RAP2, TSGA14, CETN2, TUBGCP3, NDE1, AZI1
MORI MATURE B LYMPHOCYTE DN
BIDUS METASTASIS UP
YU MYC TARGETS UP
CROONQUIST IL6 DEPRIVATION DN
FERREIRA EWINGS SARCOMA UNSTABLE VS STABLE UP
EGUCHI CELL CYCLE RB1 TARGETS
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
CHIANG LIVER CANCER SUBCLASS PROLIFERATION UPKIF4A, KIF20A, PBK, PRC1, CCNB1, BIRC5
REACTOME G1 S TRANSITION
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
GARGALOVIC RESPONSE TO OXIDIZED PHOSPHOLIPIDS TURQUOISE DN
REACTOME S PHASE
MORI LARGE PRE BII LYMPHOCYTE UP
KEGG CELL CYCLE
PUJANA BRCA CENTERED NETWORK
KEGG BASE EXCISION REPAIR
CHANG CYCLING GENESFOXM1, TACC3, CDC25C
ROSTY CERVICAL CANCER PROLIFERATION CLUSTERKIF20A, ESPL1, PCNA, KIFC1, TMPO, CCNB1, PBK, H2AFX, HMMR, CENPF, KIF4A, CCNE2, DPP3, PRC1, KIF2C, BIRC5
FAELT B CLL WITH VH REARRANGEMENTS DN
PUJANA BREAST CANCER WITH BRCA1 MUTATED UP
AMUNDSON GAMMA RADIATION RESPONSEESPL1, TACC3, LBR, H2AFX, KIFC1, CDC25C, CCNB1
SONG TARGETS OF IE86 CMV PROTEIN
FUJII YBX1 TARGETS DN
KEGG NUCLEOTIDE EXCISION REPAIR
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
helicobacter pylori kx2 npgecpseudomonas aeruginosa fdr440porphyromonas gingivalishelicobacter pylori kx1 npgecGeneSet Name
-0.00435 -0.00439 -0.00437 -0.00293RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN
-0.01048 -0.11079 -0.00002 -0.00353WONG_EMBRYONIC_STEM_CELL_CORE
-0.00736 -0.02238 -0.00364 -0.00673PUJANA_CHEK2_PCC_NETWORK
-0.00379 -0.10513 -0.02524 -0.00109LINDGREN_BLADDER_CANCER_CLUSTER_3_UP
-0.00105 -0.00616 -0.00002 -0.00054REACTOME_CELL_CYCLE_MITOTIC
-0.00300 -0.00001 -0.00095 -0.00244MISSIAGLIA_REGULATED_BY_METHYLATION_DN
-0.01414 -0.00193 -0.00360 -0.00564NUYTTEN_EZH2_TARGETS_DN
-0.00795 -0.16190 -0.00037 -0.00300FOURNIER_ACINAR_DEVELOPMENT_LATE_2
-0.00648 -0.00049 -0.02713 -0.00303WHITEFORD_PEDIATRIC_CANCER_MARKERS
-0.00042 -0.00004 -0.00005 -0.00041SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP
-0.01232 -0.01451 -0.01336 -0.00297BLUM_RESPONSE_TO_SALIRASIB_DN
-0.16883 -0.03053 -0.04312 -0.04820REACTOME_LAGGING_STRAND_SYNTHESIS
-0.01845 -0.17816 -0.12871 -0.02188NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP
-0.02446 -0.06337 -0.00504 -0.00472NCI_CENTROSOME_MATURATION
-0.00187 -0.02525 -0.19892 -0.00058GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP
-0.02224 -0.03186 -0.18322 -0.01328LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN
-0.00683 -0.00006 -0.02682 -0.00925MITSIADES_RESPONSE_TO_APLIDIN_DN
-0.02039 -0.00002 -0.00128 -0.00895PUJANA_BRCA2_PCC_NETWORK
-0.00003 -0.08869 -0.00004 -0.00086REACTOME_CELL_CYCLE_CHECKPOINTS
-0.04464 -0.04882 -0.07522 -0.08108KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.01594 -0.11126 -0.10690 -0.05940REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE
-0.00132 -0.00127 -0.02965 -0.00370LEE_EARLY_T_LYMPHOCYTE_UP
-0.00220 -0.05527 -0.00150 -0.00232HORIUCHI_WTAP_TARGETS_DN
-0.08707 -0.00593 -0.02032 -0.02871ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN
-0.00059 -0.07519 -0.02688 -0.01373MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN
-0.09745 -0.00513 -0.00069 -0.07672REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.06073 -0.00846 -0.10560 -0.06738ZHAN_MULTIPLE_MYELOMA_PR_UP
-0.05628 -0.07563 -0.04140 -0.03171NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.01435 -0.02273 -0.00441 -0.00297REACTOME_CENTROSOME_MATURATION
-0.01570 -0.00049 -0.17256 -0.00798ODONNELL_TFRC_TARGETS_DN
-0.08982 -0.00065 -0.00963 -0.06173REACTOME_GLOBAL_GENOMIC_NER
-0.01553 -0.12007 -0.10445 -0.05413NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.01242 -0.07775 -0.00845 -0.01327FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN
-0.00537 -0.07746 -0.15592 -0.00100MARKEY_RB1_ACUTE_LOF_DN
-0.02230 -0.06702 -0.00549 -0.00456NCI_LOSS_OF_PROTEINS_REQUIRED_FOR_INTERPHASE_MICROTUBULE_ORGANIZATION_FROM_THE_CENTROSOME
-0.10049 -0.16796 -0.16978 -0.09674REACTOME_METABOLISM_OF_PROTEINS
-0.00735 -0.05225 -0.00453 -0.00240REACTOME_G2_M_TRANSITION
-0.00390 -0.00001 -0.09763 -0.01585KAUFFMANN_MELANOMA_RELAPSE_UP
-0.05497 -0.00014 -0.01633 -0.00933KEGG_DNA_REPLICATION
-0.04117 -0.00189 -0.18394 -0.11919REACTOME_DOUBLE_STRAND_BREAK_REPAIR
-0.12290 -0.01975 -0.00087 -0.06469REACTOME_TRANSCRIPTION_COUPLED_NER
-0.01436 -0.00103 -0.03123 -0.01817REN_BOUND_BY_E2F
-0.01247 -0.08117 -0.00446 -0.00349CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN
-0.00583 -0.17181 -0.02882 -0.00299NCI_MITOTIC_PROMETAPHASE
-0.04230 -0.05049 -0.00406 -0.00610KOBAYASHI_EGFR_SIGNALING_24HR_DN
-0.00729 -0.00026 -0.04603 -0.00331CROONQUIST_NRAS_SIGNALING_DN
-0.01955 -0.05159 -0.00203 -0.00303REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES
-0.15675 -0.11136 -0.19511 -0.05983MANN_RESPONSE_TO_AMIFOSTINE_DN
-0.10675 -0.09845 -0.05256 -0.07647CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.06785 -0.00009 -0.00081 -0.04418REACTOME_DNA_REPAIR
-0.00481 -0.00002 -0.02841 -0.00460KANG_DOXORUBICIN_RESISTANCE_UP
-0.01416 -0.01255 -0.01342 -0.02427TANG_SENESCENCE_TP53_TARGETS_DN
-0.00016 -0.02563 -0.00002 -0.00059REACTOME_SYNTHESIS_OF_DNA
-0.02761 -0.16572 -0.00219 -0.03282SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6
-0.09101 -0.00283 -0.03015 -0.06811KAUFFMANN_DNA_REPAIR_GENES
-0.00008 -0.00646 -0.09414 -0.05432NCI_BARD1PATHWAY
-0.00217 -0.19906 -0.00002 -0.00036MOOTHA_VOXPHOS
-0.09176 -0.01150 -0.09697 -0.04666CORUM_DNA_SYNTHESOME_COMPLEX_15_SUBUNITS
-0.01724 -0.01049 -0.02686 -0.01143CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP
-0.01849 -0.00019 -0.01069 -0.00381PUJANA_XPRSS_INT_NETWORK
-0.02705 -0.04557 -0.13199 -0.01003BENPORATH_CYCLING_GENES
-0.00115 -0.17936 -0.00001 -0.00039REACTOME_ELECTRON_TRANSPORT_CHAIN
-0.02413 -0.00193 -0.02597 -0.00202MORI_IMMATURE_B_LYMPHOCYTE_DN
-0.06732 -0.07064 -0.17966 -0.02609KAUFFMANN_DNA_REPLICATION_GENES
-0.06173 -0.03113 -0.10704 -0.02450CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.02012 -0.12778 -0.15277 -0.02101PRAMOONJAGO_SOX4_TARGETS_DN
-0.00236 -0.17643 -0.00196 -0.00043KEGG_PARKINSONS_DISEASE
-0.00148 -0.16847 -0.02038 -0.00233REACTOME_MITOTIC_PROMETAPHASE
-0.00153 -0.00990 -0.00003 -0.00684WINNEPENNINCKX_MELANOMA_METASTASIS_UP
-0.07611 -0.14959 -0.00024 -0.10442MUELLER_PLURINET
-0.01704 -0.01706 -0.08221 -0.02530TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C
-0.02679 -0.14929 -0.00004 -0.05884MANALO_HYPOXIA_DN
-0.04603 -0.14858 -0.07138 -0.03512RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.04272 -0.02082 -0.02283 -0.01156ZHANG_BREAST_CANCER_PROGENITORS_UP
-0.00349 -0.10226 -0.11974 -0.00080MOOTHA_FFA_OXYDATION
-0.11495 -0.06304 -0.04101 -0.03806REACTOME_EXTENSION_OF_TELOMERES
-0.02233 -0.06723 -0.00529 -0.00485NCI_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES
-0.01267 -0.05089 -0.01427 -0.00296NCI_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES
-0.00150 -0.06272 -0.15656 -0.00237MORI_MATURE_B_LYMPHOCYTE_DN
-0.00955 -0.17970 -0.03629 -0.00728BIDUS_METASTASIS_UP
-0.00132 -0.04480 -0.03945 -0.00084YU_MYC_TARGETS_UP
-0.00206 -0.00002 -0.00054 -0.00330CROONQUIST_IL6_DEPRIVATION_DN
-0.01181 -0.00810 -0.06682 -0.01555FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP
-0.13000 -0.00126 -0.03363 -0.02187EGUCHI_CELL_CYCLE_RB1_TARGETS
-0.01265 -0.07111 -0.00819 -0.03620ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN
-0.00492 -0.09011 -0.02565 -0.00105CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP
-0.00214 -0.18368 -0.00005 -0.00298REACTOME_G1_S_TRANSITION
-0.06795 -0.19900 -0.08378 -0.06192NCI_TELOMERE_C_STRAND__LAGGING_STRAND__SYNTHESIS
-0.01622 -0.11166 -0.10699 -0.05073NCI_REPAIR_SYNTHESIS_OF_PATCH__27_30_BASES_LONG__BY_DNA_POLYMERASE
-0.00202 -0.00781 -0.00002 -0.02324GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN
-0.00017 -0.01808 -0.00004 -0.00088REACTOME_S_PHASE
-0.01198 -0.00134 -0.03260 -0.01648MORI_LARGE_PRE_BII_LYMPHOCYTE_UP
-0.00787 -0.18558 -0.10582 -0.00463KEGG_CELL_CYCLE
-0.02243 -0.00050 -0.01278 -0.00614PUJANA_BRCA_CENTERED_NETWORK
-0.02205 -0.00163 -0.05239 -0.02953KEGG_BASE_EXCISION_REPAIR
-0.00078 -0.05122 -0.02760 -0.00462CHANG_CYCLING_GENES
-0.00201 -0.00002 -0.00111 -0.00180ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER
-0.01320 -0.08878 -0.04856 -0.00762FAELT_B_CLL_WITH_VH_REARRANGEMENTS_DN
-0.02447 -0.00698 -0.12649 -0.00905PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP
-0.00005 -0.04433 -0.00349 -0.00300AMUNDSON_GAMMA_RADIATION_RESPONSE
-0.08199 -0.00237 -0.04075 -0.00952SONG_TARGETS_OF_IE86_CMV_PROTEIN
-0.01337 -0.00037 -0.11857 -0.00344FUJII_YBX1_TARGETS_DN
-0.15205 -0.00033 -0.00290 -0.04356KEGG_NUCLEOTIDE_EXCISION_REPAIR