BICLUSTER_ID : DNREG-716
PATHOGENS /4/ : pseudomonas aeruginosa,escherichia coli,yersinia enterocolitica,helicobacter pylori
TARGETS /5/ : UQCRC1, VAMP2, TK1, PDHB, NDUFS8
Gene Set | Leading Edge Genes |
---|---|
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN UP | UQCRC1, PCK2, RPS27L, CDK2AP2, VAMP2, TACC3, ICMT, NDUFS8, BLOC1S1, GOLGA2, HMBS, EBP |
TIEN INTESTINE PROBIOTICS 24HR UP | TUBG1, MSH6, PDHB, DNAJC9, SPAST, TK1, SHCBP1, SAMM50, RPA3, CCDC56, ICMT, EBP |
REACTOME CELL CYCLE MITOTIC | TUBG1, GMNN, CDC16, CDK5RAP2, TK2, ANAPC1, ODF2, SMC3, ANAPC2, RPA3, TUBGCP2 |
WONG EMBRYONIC STEM CELL CORE | KIF4A, MRPL12, RPA3, NT5DC2, BIRC5 |
MOOTHA MITOCHONDRIA | |
MOOTHA HUMAN MITODB 6 2002 | |
CAIRO HEPATOBLASTOMA CLASSES UP | |
NCI MRNA SPLICING MINOR PATHWAY | |
REACTOME NUCLEOTIDE EXCISION REPAIR | |
REACTOME TRANSCRIPTION COUPLED NER | |
REACTOME DNA REPAIR | |
KEGG NUCLEOTIDE EXCISION REPAIR |
Color legend | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
q-value | -1 | -0.2 | -0.05 | -0.01 | -0.001 | -0.0001 | |||||
Color |
yersinia enterocolitica wap bl6 | helicobacter pylori kx2 npgec | yersinia enterocolitica p60 bc | pseudomonas aeruginosa fdr1 | helicobacter pylori kx1 npgec | escherichia coli | GeneSet Name |
---|---|---|---|---|---|---|
-0.00588 | -0.00740 | -0.02395 | -0.11916 | -0.00205 | -0.10364 | SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP |
-0.00084 | -0.00160 | -0.06732 | -0.13695 | -0.00057 | -0.08017 | TIEN_INTESTINE_PROBIOTICS_24HR_UP |
-0.02742 | -0.00105 | -0.19845 | -0.13427 | -0.00054 | -0.00008 | REACTOME_CELL_CYCLE_MITOTIC |
-0.00014 | -0.01048 | -0.04038 | -0.16059 | -0.00353 | -0.00075 | WONG_EMBRYONIC_STEM_CELL_CORE |
-0.00013 | -0.00530 | -0.00050 | -0.04809 | -0.00294 | -0.16932 | MOOTHA_MITOCHONDRIA |
-0.00017 | -0.00502 | -0.00061 | -0.04964 | -0.00231 | -0.18777 | MOOTHA_HUMAN_MITODB_6_2002 |
-0.00045 | -0.02501 | -0.03452 | -0.05662 | -0.01507 | -0.00621 | CAIRO_HEPATOBLASTOMA_CLASSES_UP |
-0.00008 | -0.05016 | -0.00255 | -0.04732 | -0.09559 | -0.16916 | NCI_MRNA_SPLICING___MINOR_PATHWAY |
-0.00106 | -0.09745 | -0.00115 | -0.05776 | -0.07672 | -0.00018 | REACTOME_NUCLEOTIDE_EXCISION_REPAIR |
-0.00072 | -0.12290 | -0.00195 | -0.06252 | -0.06469 | -0.00131 | REACTOME_TRANSCRIPTION_COUPLED_NER |
-0.00368 | -0.06785 | -0.01104 | -0.09715 | -0.04418 | -0.00022 | REACTOME_DNA_REPAIR |
-0.01686 | -0.15205 | -0.00507 | -0.10245 | -0.04356 | -0.00032 | KEGG_NUCLEOTIDE_EXCISION_REPAIR |