BICLUSTER_ID : DNREG-74
PATHOGENS /4/ : pseudomonas aeruginosa,bifidobacterium bifidum,lactobacillus acidophilus,burkholderia pseudomallei
TARGETS /5/ : MCM6, LIG1, LARS, NARS, IARS
Gene SetLeading Edge Genes
NCI CYTOSOLIC TRNA AMINOACYLATIONLARS, IARS, NARS
REACTOME TRANSCRIPTION COUPLED NERLIG1, RPA1, RFC4, POLD1, RFC5, POLE2
KEGG MISMATCH REPAIRLIG1, MSH6, EXO1, RFC4, RPA1, MLH1, POLD1
KALMA E2F1 TARGETSMCM6, RFC4, POLD1, TOP2A
WILCOX PRESPONSE TO ROGESTERONE UP
KEGG HOMOLOGOUS RECOMBINATION
KIM MYC AMPLIFICATION TARGETS UP
MONTERO THYROID CANCER POOR SURVIVAL UP
REACTOME CELL CYCLE CHECKPOINTS
NCI REMOVAL OF THE FLAP INTERMEDIATEFEN1, RPA1, POLD1, PRIM1
CORUM BRAFT COMPLEX
KUMAMOTO RESPONSE TO NUTLIN 3A DN
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASERPA1, RFC4, RFC5, POLD1, POLE2
NCI G1 S TRANSITION
REACTOME NUCLEOTIDE EXCISION REPAIR
NCI GLOBAL GENOMIC NER GG NER
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
SLEBOS HEAD AND NECK CANCER WITH HPV UP
REACTOME CENTROSOME MATURATION
REACTOME CYTOSOLIC TRNA AMINOACYLATION
VANTVEER BREAST CANCER POOR PROGNOSIS
CORUM F1F0-ATP SYNTHASE EC 3.6.3.14 MITOCHONDRIAL
NCI M G1 TRANSITION
REACTOME GLOBAL GENOMIC NER
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NERRPA1, RFC4, RFC5, POLD1, POLE2
DAZARD UV RESPONSE CLUSTER G6
NCI ASSEMBLY OF THE PRE REPLICATIVE COMPLEX
REACTOME G2 M TRANSITION
REACTOME DOUBLE STRAND BREAK REPAIR
NCI DNA REPLICATION PRE INITIATION
ZHANG RESPONSE TO IKK INHIBITOR AND TNF DN
VERNELL RETINOBLASTOMA PATHWAY UP
SEMBA FHIT TARGETS DN
BIOCARTA MCM PATHWAY
MANN RESPONSE TO AMIFOSTINE DN
NCI UNWINDING OF DNA
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITSRPA1, TOP2B, TOP2A, POLD1, PRIM1
SHEPARD CRUSH AND BURN MUTANT DN
KEGG VALINE LEUCINE AND ISOLEUCINE DEGRADATION
JEON SMAD6 TARGETS DN
TANG SENESCENCE TP53 TARGETS DN
REACTOME SYNTHESIS OF DNA
NCI SYNTHESIS OF DNA
KAUFFMANN DNA REPAIR GENES
PYEON CANCER HEAD AND NECK VS CERVICAL UP
REACTOME UNWINDING OF DNA
CORUM BASC AB 80 COMPLEX BRCA1-ASSOCIATED GENOME SURVEILLANCE COMPLEX
CORUM DNA SYNTHESOME CORE COMPLEX
CORUM MCM COMPLEX
GEORGES TARGETS OF MIR192 AND MIR215
CORUM BASC COMPLEX BRCA1-ASSOCIATED GENOME SURVEILLANCE COMPLEX
REACTOME HOMOLOGOUS RECOMBINATION REPAIR
NCI BARD1PATHWAY
MOOTHA VOXPHOS
REACTOME INFLUENZA LIFE CYCLE
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
YAMASHITA LIVER CANCER WITH EPCAM UP
REACTOME ELECTRON TRANSPORT CHAIN
GEORGES CELL CYCLE MIR192 TARGETS
CORUM 18S U11/U12 SNRNP
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITSRPA1, TOP2B, POLD1, TOP2A, POLE2, PRIM1
NCI PYRIMIDINE BIOSYNTHESIS INTERCONVERSION
NCI CELL CYCLE MITOTIC
WAKASUGI HAVE ZNF143 BINDING SITESMSH6, FEN1, RECQL4, TDP1, PMS1, MRE11A, RAD50, XPC, EXO1, POLD1, GTF2H5, RAD1
PRAMOONJAGO SOX4 TARGETS DN
KEGG PARKINSONS DISEASE
NCI REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND
MODY HIPPOCAMPUS PRENATAL
REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND
NCI DNA REPLICATION
KEGG PROPANOATE METABOLISM
CHIARETTI T ALL RELAPSE PROGNOSIS
NCI E2F TRANSCRIPTIONAL TARGETS AT G1 S
KRASNOSELSKAYA ILF3 TARGETS DN
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
CORUM NOP56P-ASSOCIATED PRE-RRNA COMPLEX
POMEROY MEDULLOBLASTOMA PROGNOSIS DN
NCI RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES
MORI MATURE B LYMPHOCYTE DN
NCI LEADING STRAND SYNTHESIS
REACTOME BASE EXCISION REPAIR
REACTOME REMOVAL OF THE FLAP INTERMEDIATE
NCI DUAL INCISION REACTION IN GG NER
CORUM MULTISYNTHETASE COMPLEX
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
REACTOME G1 S TRANSITION
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASERPA1, RFC4, RFC5, POLD1, POLE2
CORUM MCM2-MCM4-MCM6-MCM7 COMPLEX
NCI FORMATION OF INCISION COMPLEX IN GG NER
KEGG BASE EXCISION REPAIR
FAELT B CLL WITH VH REARRANGEMENTS DN
TOMLINS PROSTATE CANCER UP
NCI PROCESSIVE SYNTHESIS ON THE C STRAND OF THE TELOMERE
CORUM CONDENSIN I-PARP-1-XRCC1 COMPLEX
PROVENZANI METASTASIS UP
REACTOME DUAL INCISION REACTION IN GG NER
STEIN ESR1 TARGETS
KEGG NUCLEOTIDE EXCISION REPAIR
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
burkholderia pseudomalleilactobacillus acidophiluspseudomonas aeruginosa fdr440bifidobacterium bifidumGeneSet Name
-0.00193 -0.00110 -0.07213 -0.00011NCI_CYTOSOLIC_TRNA_AMINOACYLATION
-0.00209 -0.00076 -0.01975 -0.00003REACTOME_TRANSCRIPTION_COUPLED_NER
-0.00688 -0.00004 -0.00771 -0.00001KEGG_MISMATCH_REPAIR
-0.00077 -0.00092 -0.00056 -0.00129KALMA_E2F1_TARGETS
-0.02750 -0.01815 -0.13083 -0.00264WILCOX_PRESPONSE_TO_ROGESTERONE_UP
-0.03495 -0.01212 -0.07686 -0.00304KEGG_HOMOLOGOUS_RECOMBINATION
-0.00511 -0.00009 -0.17947 -0.00639KIM_MYC_AMPLIFICATION_TARGETS_UP
-0.00042 -0.00006 -0.02697 -0.00022MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP
-0.02029 -0.00613 -0.08869 -0.00026REACTOME_CELL_CYCLE_CHECKPOINTS
-0.00092 -0.00273 -0.12443 -0.00016NCI_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.09411 -0.10790 -0.07690 -0.00947CORUM_BRAFT_COMPLEX
-0.00073 -0.00892 -0.04882 -0.02902KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.00197 -0.00287 -0.11126 -0.00005REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE
-0.02482 -0.00124 -0.00217 -0.00038NCI_G1_S_TRANSITION
-0.00208 -0.00033 -0.00513 -0.00004REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.15590 -0.04065 -0.00759 -0.02471NCI_GLOBAL_GENOMIC_NER__GG_NER_
-0.08753 -0.03589 -0.07563 -0.00289NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.05309 -0.07168 -0.12801 -0.00395SLEBOS_HEAD_AND_NECK_CANCER_WITH_HPV_UP
-0.03691 -0.09600 -0.02273 -0.04334REACTOME_CENTROSOME_MATURATION
-0.00092 -0.00074 -0.04935 -0.00027REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION
-0.08354 -0.05079 -0.16770 -0.00786VANTVEER_BREAST_CANCER_POOR_PROGNOSIS
-0.03491 -0.07899 -0.19532 -0.00390CORUM_F1F0-ATP_SYNTHASE_EC_3.6.3.14_MITOCHONDRIAL
-0.02675 -0.00092 -0.00240 -0.00029NCI_M_G1_TRANSITION
-0.01224 -0.00101 -0.00065 -0.00003REACTOME_GLOBAL_GENOMIC_NER
-0.00243 -0.00254 -0.12007 -0.00006NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.01388 -0.13237 -0.04777 -0.01576DAZARD_UV_RESPONSE_CLUSTER_G6
-0.02614 -0.00068 -0.00244 -0.00040NCI_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX
-0.03193 -0.00886 -0.05225 -0.00061REACTOME_G2_M_TRANSITION
-0.02025 -0.00636 -0.00189 -0.00009REACTOME_DOUBLE_STRAND_BREAK_REPAIR
-0.02540 -0.00059 -0.00242 -0.00033NCI_DNA_REPLICATION_PRE_INITIATION
-0.14069 -0.01251 -0.01852 -0.01469ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_DN
-0.00019 -0.11739 -0.07874 -0.00023VERNELL_RETINOBLASTOMA_PATHWAY_UP
-0.00315 -0.00196 -0.02261 -0.00238SEMBA_FHIT_TARGETS_DN
-0.00312 -0.00259 -0.00613 -0.00013BIOCARTA_MCM_PATHWAY
-0.01162 -0.09436 -0.11136 -0.00958MANN_RESPONSE_TO_AMIFOSTINE_DN
-0.00072 -0.00096 -0.00281 -0.00503NCI_UNWINDING_OF_DNA
-0.01432 -0.00268 -0.09845 -0.00025CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.02242 -0.00916 -0.13403 -0.00019SHEPARD_CRUSH_AND_BURN_MUTANT_DN
-0.12647 -0.00666 -0.00661 -0.01075KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION
-0.00740 -0.00003 -0.00748 -0.00006JEON_SMAD6_TARGETS_DN
-0.00127 -0.00887 -0.01255 -0.00022TANG_SENESCENCE_TP53_TARGETS_DN
-0.04929 -0.03098 -0.02563 -0.00140REACTOME_SYNTHESIS_OF_DNA
-0.03312 -0.02542 -0.02292 -0.01158NCI_SYNTHESIS_OF_DNA
-0.00140 -0.00009 -0.00283 -0.00001KAUFFMANN_DNA_REPAIR_GENES
-0.09704 -0.02499 -0.00754 -0.00013PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP
-0.00279 -0.01181 -0.00308 -0.00453REACTOME_UNWINDING_OF_DNA
-0.03683 -0.06130 -0.02258 -0.00810CORUM_BASC_AB_80_COMPLEX_BRCA1-ASSOCIATED_GENOME_SURVEILLANCE_COMPLEX
-0.09978 -0.03363 -0.16829 -0.00321CORUM_DNA_SYNTHESOME_CORE_COMPLEX
-0.00534 -0.00509 -0.03908 -0.00700CORUM_MCM_COMPLEX
-0.11512 -0.10556 -0.09879 -0.03758GEORGES_TARGETS_OF_MIR192_AND_MIR215
-0.01449 -0.05382 -0.00022 -0.00218CORUM_BASC_COMPLEX_BRCA1-ASSOCIATED_GENOME_SURVEILLANCE_COMPLEX
-0.04299 -0.02116 -0.00125 -0.00040REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR
-0.00861 -0.10891 -0.00646 -0.00385NCI_BARD1PATHWAY
-0.00001 -0.00010 -0.19906 -0.00001MOOTHA_VOXPHOS
-0.10807 -0.03007 -0.00003 -0.02512REACTOME_INFLUENZA_LIFE_CYCLE
-0.04316 -0.00228 -0.01150 -0.00018CORUM_DNA_SYNTHESOME_COMPLEX_15_SUBUNITS
-0.06516 -0.00028 -0.12793 -0.00983YAMASHITA_LIVER_CANCER_WITH_EPCAM_UP
-0.00001 -0.00013 -0.17936 -0.00015REACTOME_ELECTRON_TRANSPORT_CHAIN
-0.01320 -0.07925 -0.13337 -0.00666GEORGES_CELL_CYCLE_MIR192_TARGETS
-0.00540 -0.00096 -0.19494 -0.03082CORUM_18S_U11/U12_SNRNP
-0.00750 -0.00058 -0.03113 -0.00005CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.00529 -0.00402 -0.16804 -0.00367NCI_PYRIMIDINE_BIOSYNTHESIS__INTERCONVERSION_
-0.02522 -0.00062 -0.00235 -0.00033NCI_CELL_CYCLE__MITOTIC
-0.01482 -0.00168 -0.06683 -0.00163WAKASUGI_HAVE_ZNF143_BINDING_SITES
-0.00016 -0.01315 -0.12778 -0.00435PRAMOONJAGO_SOX4_TARGETS_DN
-0.00001 -0.06903 -0.17643 -0.01713KEGG_PARKINSONS_DISEASE
-0.00049 -0.02060 -0.16722 -0.00157NCI_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND
-0.16652 -0.04371 -0.06516 -0.01217MODY_HIPPOCAMPUS_PRENATAL
-0.00150 -0.04149 -0.08832 -0.00364REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND
-0.03407 -0.03064 -0.02251 -0.01085NCI_DNA_REPLICATION
-0.12766 -0.02277 -0.07647 -0.09374KEGG_PROPANOATE_METABOLISM
-0.00006 -0.01043 -0.05025 -0.00081CHIARETTI_T_ALL_RELAPSE_PROGNOSIS
-0.02590 -0.01184 -0.14244 -0.00002NCI_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S
-0.17804 -0.06327 -0.03204 -0.01818KRASNOSELSKAYA_ILF3_TARGETS_DN
-0.01642 -0.06171 -0.14858 -0.02139RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.06609 -0.00811 -0.02277 -0.03158CORUM_NOP56P-ASSOCIATED_PRE-RRNA_COMPLEX
-0.00119 -0.00167 -0.17962 -0.02061POMEROY_MEDULLOBLASTOMA_PROGNOSIS_DN
-0.10845 -0.12679 -0.05089 -0.05676NCI_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES
-0.00680 -0.05857 -0.06272 -0.00292MORI_MATURE_B_LYMPHOCYTE_DN
-0.10597 -0.06159 -0.19907 -0.00774NCI_LEADING_STRAND_SYNTHESIS
-0.09416 -0.01351 -0.13788 -0.00624REACTOME_BASE_EXCISION_REPAIR
-0.00365 -0.00820 -0.05993 -0.00040REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.19597 -0.04484 -0.00676 -0.02757NCI_DUAL_INCISION_REACTION_IN_GG_NER
-0.05138 -0.01897 -0.08216 -0.03490CORUM_MULTISYNTHETASE_COMPLEX
-0.00012 -0.01392 -0.07111 -0.00057ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN
-0.04051 -0.00092 -0.18368 -0.00002REACTOME_G1_S_TRANSITION
-0.10843 -0.06068 -0.19900 -0.00811NCI_TELOMERE_C_STRAND__LAGGING_STRAND__SYNTHESIS
-0.00235 -0.00243 -0.11166 -0.00006NCI_REPAIR_SYNTHESIS_OF_PATCH__27_30_BASES_LONG__BY_DNA_POLYMERASE
-0.02303 -0.02433 -0.16713 -0.03786CORUM_MCM2-MCM4-MCM6-MCM7_COMPLEX
-0.17923 -0.04074 -0.00756 -0.02804NCI_FORMATION_OF_INCISION_COMPLEX_IN_GG_NER
-0.00205 -0.00130 -0.00163 -0.00058KEGG_BASE_EXCISION_REPAIR
-0.07192 -0.11692 -0.08878 -0.13671FAELT_B_CLL_WITH_VH_REARRANGEMENTS_DN
-0.16663 -0.13354 -0.02478 -0.01698TOMLINS_PROSTATE_CANCER_UP
-0.16662 -0.12089 -0.13015 -0.03557NCI_PROCESSIVE_SYNTHESIS_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.00349 -0.01173 -0.12452 -0.01619CORUM_CONDENSIN_I-PARP-1-XRCC1_COMPLEX
-0.00028 -0.17116 -0.16239 -0.18448PROVENZANI_METASTASIS_UP
-0.03000 -0.03897 -0.00661 -0.02596REACTOME_DUAL_INCISION_REACTION_IN_GG_NER
-0.05121 -0.01528 -0.19857 -0.00142STEIN_ESR1_TARGETS
-0.01443 -0.00448 -0.00033 -0.00238KEGG_NUCLEOTIDE_EXCISION_REPAIR