BICLUSTER_ID : DNREG-78
PATHOGENS /4/ : aggregatibacter actinomycetemcomitans,yersinia enterocolitica,aeromonas caviae,helicobacter pylori
TARGETS /24/ : SQLE, NDUFV2, PPP2CB, NDUFB8, GPX4, PSMD1, PSAT1, NDUFB5, NDUFA2, UQCRC1, NDUFA6, NDUFB3, PSMB2, PSMD2, NDUFS4, SLC25A4, NDUFA4, NDUFB6, TK1, HDAC2, NDUFB2, SDHD, NDUFS3, NDUFC1
Gene SetLeading Edge Genes
KEGG HUNTINGTONS DISEASENDUFV2, POLR2L, NDUFB5, NDUFA2, ATP5O, UQCRC1, NDUFA6, NDUFB3, NDUFS4, NDUFB6, HDAC2, DCTN2, COX6C, NDUFB2, SDHD, NDUFS3, NDUFC1
PUJANA CHEK2 PCC NETWORKSQLE, RFC3, HDGF, SFRS3, MAGOH, POLE3, ZWINT, TMPO, CCNB1, CENPA, RAN, SMC2, SLBP, HSPE1, ICT1, ATP5O, ERCC3, POP5, COPS3, SEP15, COX6C, NDUFV2, SAR1A, RPA3, CCNA2, SNRPB2, NDUFB3, CCT5, DNAJC9, XRCC5, HDAC2, SEC61G, IDI1, SCYE1
REACTOME HIV INFECTIONGTF2F1, PSMC5, TCEB2, POLR2L, PSMC3, RAN, PSMD1, PSMB7, ERCC3, PSMB2, PSMD2, PSMD6, RAE1, SLC25A4, NUP93, XRCC5, BANF1
YAO TEMPORAL RESPONSE TO PROGESTERONE CLUSTER 13ATP5O, POLE3, TCEB2, CYB5B, NDUFB8, GPX4, GUK1, MRPL35, MRPS33, DYNLRB1, SPCS1, PSAT1, SEP15, CCDC56, MRPL18, TIMM8B, NDUFC1
REACTOME CELL CYCLE MITOTICPSMC5, RFC3, RFC2, PPP2CB, ZWINT, PSMC3, CENPA, ZWILCH, RPA3, CCNA2, PSMB2, PSMD2, KIF18A, PSMD6, DCTN2, NDE1, DYNLL1, BIRC5
CORUM PA700-20S-PA28 COMPLEXPSMB2, PSMC5, PSMD2, PSMD1, PSMB7, PSMD6, PSMB3, PSMB6, PSMC3
MARKEY RB1 ACUTE LOF DNVAMP5, TMPO, CCNB1, CENPA, TIPIN, DNAJC9, SMC2, HDAC2, TK1, BANF1, CCNA2, BIRC5
RHEIN ALL GLUCOCORTICOID THERAPY DNPSMB2, ARPC5L, ZWINT, DAD1, UGP2, MRPS33, SMC2, ING2, CFDP1, NDUFB5, SHCBP1, DYNLL1, BIRC5
BIOCARTA PROTEASOME PATHWAYPSMB2, PSMB7, PSMB3, UBE3A, UBE2A, PSMB6
CHIANG LIVER CANCER SUBCLASS UNANNOTATED DNRFC3, POLE3, DAD1, MRPS12, PSMC3, NDUFA4, UBE2E3, RAN, XRCC5, COPS3, RPA3, LSM2
NCI HIV 1 TRANSCRIPTION INITIATION
BORCZUK MALIGNANT MESOTHELIOMA UP
PUJANA BRCA1 PCC NETWORK
REACTOME CELL CYCLE CHECKPOINTS
PAL PRMT5 TARGETS UPPRKCDBP, PSMD6, TMPO, PSMC3, UBE2E3, SLBP, COPS3, CFDP1, MRPL20, LSM2, NDE1
CORUM BRCA1-RNA POLYMERASE II COMPLEX
NCI RNA POLYMERASE II TRANSCRIPTION PRE INITIATION
TARTE PLASMA CELL VS PLASMABLAST DN
REACTOME NUCLEOTIDE EXCISION REPAIR
REACTOME ABORTIVE ELONGATION OF HIV1 TRANSCRIPT IN THE ABSENCE OF TAT
CORUM DDB2 COMPLEX
CAFFAREL RESPONSE TO THC DN
NCI VIRAL MESSENGER RNA SYNTHESIS
REACTOME GLOBAL GENOMIC NER
REACTOME RNA POLYMERASE I III AND MITOCHONDRIAL TRANSCRIPTION
NUYTTEN EZH2 TARGETS DN
NCI FORMATION OF THE HIV 1 EARLY ELONGATION COMPLEX
DIAZ CHRONIC MEYLOGENOUS LEUKEMIA UP
REACTOME TRANSCRIPTION COUPLED NER
CORUM CSA COMPLEX
KEGG RNA POLYMERASE
NCI MRNA CAPPING
NCI PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC
NCI RNA POLYMERASE II TRANSCRIPTION
NCI SCF SKP2 MEDIATED DEGRADATION OF P27 P21
NCI FORMATION OF THE EARLY ELONGATION COMPLEX
CORUM PA700 COMPLEX
BOYAULT LIVER CANCER SUBCLASS G23 UP
REACTOME VIRAL MESSENGER RNA SYNTHESIS
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP
REACTOME HOST INTERACTIONS OF HIV FACTORS
REACTOME METABOLISM OF RNA
XU HGF SIGNALING NOT VIA AKT1 48HR DN
NCI HIV 1 TRANSCRIPTION ELONGATION
REACTOME DNA REPLICATION PRE INITIATION
NCI PAUSING AND RECOVERY OF TAT MEDIATED HIV 1 ELONGATION
REACTOME FORMATION OF THE EARLY ELONGATION COMPLEX
REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA
NCI VPU MEDIATED DEGRADATION OF CD4
REACTOME LATE PHASE OF HIV LIFE CYCLE
DING LUNG CANCER EXPRESSION BY COPY NUMBER
KEGG PARKINSONS DISEASE
WINNEPENNINCKX MELANOMA METASTASIS UP
NCI ELONGATION OF INTRON CONTAINING TRANSCRIPTS AND CO TRANSCRIPTIONAL MRNA SPLICING
CORUM RESPIRATORY CHAIN COMPLEX I BETA SUBUNIT MITOCHONDRIAL
REACTOME HIV1 TRANSCRIPTION INITIATION
CORUM BRCA1-CORE RNA POLYMERASE II COMPLEX
REACTOME DIABETES PATHWAYS
GARY CD5 TARGETS DN
NCI RNA POLYMERASE II PROMOTER ESCAPE
ZHANG BREAST CANCER PROGENITORS UP
NCI ABORTIVE ELONGATION OF HIV 1 TRANSCRIPT IN THE ABSENCE OF TAT
NCI RNA POLYMERASE II TRANSCRIPTION INITIATION
NCI RNA POLYMERASE II HIV 1 PROMOTER ESCAPE
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN DN
CORUM 20S PROTEASOME
REACTOME MRNA SPLICING MINOR PATHWAY
CORUM 26S PROTEASOME
NCI PROCESSING OF CAPPED INTRON CONTAINING PRE MRNAPOLR2F, POLR2L, POLR2J
WEST ADRENOCORTICAL TUMOR UP
YU MYC TARGETS UP
CORUM RNA POLYMERASE II HOLOENZYME COMPLEX
CORUM COP9 SIGNALOSOME COMPLEX
KINSEY TARGETS OF EWSR1 FLII FUSION UP
LASTOWSKA NEUROBLASTOMA COPY NUMBER UP
REACTOME S PHASE
WEI MYCN TARGETS WITH E BOX
MORI LARGE PRE BII LYMPHOCYTE UP
BOYAULT LIVER CANCER SUBCLASS G3 UP
MOREAUX MULTIPLE MYELOMA BY TACI DN
NCI FORMATION AND MATURATION OF MRNA TRANSCRIPT
RHODES CANCER META SIGNATURE
NCI RNA POLYMERASE II TRANSCRIPTION INITIATION AND PROMOTER CLEARANCE
REACTOME TRANSCRIPTION
NCI VIF MEDIATED DEGRADATION OF APOBEC3G
NCI REGULATION OF ACTIVATED PAK 2P34 BY PROTEASOME MEDIATED DEGRADATION1
NCI PAUSING AND RECOVERY OF HIV 1 ELONGATION
NCI HIV 1 TRANSCRIPTION PRE INITIATION
CORUM CSA-POLIIA COMPLEX
NCI SWITCHING OF ORIGINS TO A POST REPLICATIVE STATE
REACTOME HIV LIFE CYCLE
NCI DEGRADATION OF BETA CATENIN BY THE DESTRUCTION COMPLEX
NCI MICRORNA MIRNA BIOGENESIS
NCI TRANSCRIPTION OF THE HIV GENOME
NCI MRNA SPLICING MINOR PATHWAY
KEGG NUCLEOTIDE EXCISION REPAIR
REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
yersinia enterocolitica wap bl6helicobacter pylori kx2 npgecaeromonas caviaaggregatibacter actinomycetemcomitansGeneSet Name
-0.00008 -0.00684 -0.00074 -0.00352KEGG_HUNTINGTONS_DISEASE
-0.00227 -0.00736 -0.00037 -0.00106PUJANA_CHEK2_PCC_NETWORK
-0.00025 -0.01247 -0.01059 -0.00538REACTOME_HIV_INFECTION
-0.00008 -0.00018 -0.00014 -0.01265YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13
-0.02742 -0.00105 -0.01738 -0.01005REACTOME_CELL_CYCLE_MITOTIC
-0.01665 -0.00002 -0.00461 -0.00151CORUM_PA700-20S-PA28_COMPLEX
-0.08737 -0.00537 -0.03439 -0.00587MARKEY_RB1_ACUTE_LOF_DN
-0.06420 -0.00435 -0.00008 -0.04316RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN
-0.04743 -0.00080 -0.01760 -0.02323BIOCARTA_PROTEASOME_PATHWAY
-0.00621 -0.00042 -0.00408 -0.00039CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN
-0.00007 -0.14680 -0.00339 -0.00228NCI_HIV_1_TRANSCRIPTION_INITIATION
-0.01208 -0.00017 -0.00026 -0.00036BORCZUK_MALIGNANT_MESOTHELIOMA_UP
-0.03054 -0.04039 -0.02210 -0.12299PUJANA_BRCA1_PCC_NETWORK
-0.01735 -0.00003 -0.12741 -0.02580REACTOME_CELL_CYCLE_CHECKPOINTS
-0.02638 -0.00055 -0.00510 -0.00051PAL_PRMT5_TARGETS_UP
-0.00072 -0.05018 -0.01956 -0.00562CORUM_BRCA1-RNA_POLYMERASE_II_COMPLEX
-0.00008 -0.12419 -0.00307 -0.00217NCI_RNA_POLYMERASE_II_TRANSCRIPTION_PRE_INITIATION
-0.19249 -0.00337 -0.00013 -0.00685TARTE_PLASMA_CELL_VS_PLASMABLAST_DN
-0.00106 -0.09745 -0.02788 -0.00561REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.00017 -0.09746 -0.03379 -0.00370REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.01678 -0.06534 -0.05984 -0.04847CORUM_DDB2_COMPLEX
-0.14444 -0.00260 -0.00401 -0.01000CAFFAREL_RESPONSE_TO_THC_DN
-0.00014 -0.01981 -0.00344 -0.00032NCI_VIRAL_MESSENGER_RNA_SYNTHESIS
-0.08475 -0.08982 -0.14426 -0.12872REACTOME_GLOBAL_GENOMIC_NER
-0.10523 -0.01884 -0.14678 -0.19157REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION
-0.01992 -0.01414 -0.09241 -0.12376NUYTTEN_EZH2_TARGETS_DN
-0.00007 -0.11051 -0.00213 -0.00084NCI_FORMATION_OF_THE_HIV_1_EARLY_ELONGATION_COMPLEX
-0.00284 -0.00417 -0.00199 -0.03522DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP
-0.00072 -0.12290 -0.01564 -0.00673REACTOME_TRANSCRIPTION_COUPLED_NER
-0.00116 -0.07881 -0.00746 -0.06138CORUM_CSA_COMPLEX
-0.00174 -0.18788 -0.13324 -0.00474KEGG_RNA_POLYMERASE
-0.00012 -0.04683 -0.00231 -0.00364NCI_MRNA_CAPPING
-0.11469 -0.14286 -0.05385 -0.02748NCI_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE__TO_CCT_TRIC
-0.00008 -0.14057 -0.00354 -0.00227NCI_RNA_POLYMERASE_II_TRANSCRIPTION
-0.01528 -0.00003 -0.16007 -0.00147NCI_SCF_SKP2__MEDIATED_DEGRADATION_OF_P27_P21
-0.00009 -0.10989 -0.00204 -0.00082NCI_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX
-0.14843 -0.00856 -0.00033 -0.07056CORUM_PA700_COMPLEX
-0.13323 -0.17014 -0.01335 -0.12897BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP
-0.00176 -0.11755 -0.04282 -0.00828REACTOME_VIRAL_MESSENGER_RNA_SYNTHESIS
-0.07573 -0.00489 -0.00040 -0.07824ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP
-0.06020 -0.00331 -0.06036 -0.18688REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS
-0.02924 -0.00771 -0.03500 -0.17872REACTOME_METABOLISM_OF_RNA
-0.18588 -0.02144 -0.06050 -0.11682XU_HGF_SIGNALING_NOT_VIA_AKT1_48HR_DN
-0.00009 -0.02062 -0.00209 -0.00086NCI_HIV_1_TRANSCRIPTION_ELONGATION
-0.19537 -0.00061 -0.12621 -0.07063REACTOME_DNA_REPLICATION_PRE_INITIATION
-0.00014 -0.11906 -0.05820 -0.01167NCI_PAUSING_AND_RECOVERY_OF_TAT_MEDIATED_HIV_1_ELONGATION
-0.00007 -0.13718 -0.00224 -0.00214REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX
-0.00009 -0.09134 -0.00110 -0.00106REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.05118 -0.00003 -0.13870 -0.00454NCI_VPU_MEDIATED_DEGRADATION_OF_CD4
-0.00016 -0.17593 -0.00060 -0.04575REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE
-0.02956 -0.07293 -0.01153 -0.12832DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER
-0.00356 -0.00236 -0.00031 -0.01663KEGG_PARKINSONS_DISEASE
-0.08253 -0.00153 -0.00221 -0.00130WINNEPENNINCKX_MELANOMA_METASTASIS_UP
-0.00007 -0.03275 -0.00192 -0.01010NCI_ELONGATION_OF_INTRON_CONTAINING_TRANSCRIPTS_AND_CO_TRANSCRIPTIONAL_MRNA_SPLICING
-0.00595 -0.14529 -0.00196 -0.02489CORUM_RESPIRATORY_CHAIN_COMPLEX_I_BETA_SUBUNIT_MITOCHONDRIAL
-0.00009 -0.14535 -0.00341 -0.00226REACTOME_HIV1_TRANSCRIPTION_INITIATION
-0.00165 -0.14151 -0.16746 -0.03688CORUM_BRCA1-CORE_RNA_POLYMERASE_II_COMPLEX
-0.09692 -0.04914 -0.00050 -0.17936REACTOME_DIABETES_PATHWAYS
-0.01797 -0.04586 -0.00012 -0.00636GARY_CD5_TARGETS_DN
-0.00011 -0.13525 -0.00342 -0.00232NCI_RNA_POLYMERASE_II_PROMOTER_ESCAPE
-0.00564 -0.04272 -0.02211 -0.01073ZHANG_BREAST_CANCER_PROGENITORS_UP
-0.00012 -0.07079 -0.03056 -0.00129NCI_ABORTIVE_ELONGATION_OF_HIV_1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.00007 -0.13340 -0.00362 -0.00217NCI_RNA_POLYMERASE_II_TRANSCRIPTION_INITIATION
-0.00007 -0.02816 -0.00350 -0.00215NCI_RNA_POLYMERASE_II_HIV_1_PROMOTER_ESCAPE
-0.05147 -0.01177 -0.13184 -0.07808SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN
-0.14274 -0.00063 -0.05586 -0.01634CORUM_20S_PROTEASOME
-0.00011 -0.04166 -0.00519 -0.00045REACTOME_MRNA_SPLICING_MINOR_PATHWAY
-0.13654 -0.00017 -0.00087 -0.01654CORUM_26S_PROTEASOME
-0.00016 -0.01014 -0.01716 -0.01799NCI_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.12863 -0.00769 -0.00123 -0.03574WEST_ADRENOCORTICAL_TUMOR_UP
-0.12252 -0.00132 -0.00075 -0.00022YU_MYC_TARGETS_UP
-0.00017 -0.06233 -0.02722 -0.00428CORUM_RNA_POLYMERASE_II_HOLOENZYME_COMPLEX
-0.01606 -0.01928 -0.04290 -0.16882CORUM_COP9_SIGNALOSOME_COMPLEX
-0.12831 -0.00192 -0.00039 -0.00655KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP
-0.12069 -0.01249 -0.00766 -0.12889LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP
-0.16869 -0.00017 -0.05997 -0.00982REACTOME_S_PHASE
-0.09133 -0.05104 -0.00002 -0.02179WEI_MYCN_TARGETS_WITH_E_BOX
-0.06022 -0.01198 -0.08123 -0.04933MORI_LARGE_PRE_BII_LYMPHOCYTE_UP
-0.01336 -0.02713 -0.00003 -0.04944BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP
-0.02069 -0.10216 -0.00005 -0.01891MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.00009 -0.03064 -0.00336 -0.00222NCI_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT
-0.04975 -0.04160 -0.00533 -0.18769RHODES_CANCER_META_SIGNATURE
-0.00008 -0.03255 -0.00380 -0.00224NCI_RNA_POLYMERASE_II_TRANSCRIPTION_INITIATION_AND_PROMOTER_CLEARANCE
-0.00010 -0.15609 -0.02517 -0.00380REACTOME_TRANSCRIPTION
-0.02805 -0.00002 -0.06065 -0.00112NCI_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G
-0.02705 -0.00002 -0.13777 -0.00217NCI_REGULATION_OF_ACTIVATED_PAK_2P34_BY_PROTEASOME_MEDIATED_DEGRADATION1
-0.00013 -0.15049 -0.10650 -0.03849NCI_PAUSING_AND_RECOVERY_OF_HIV_1_ELONGATION
-0.00007 -0.13001 -0.00359 -0.00226NCI_HIV_1_TRANSCRIPTION_PRE_INITIATION
-0.00160 -0.09605 -0.01507 -0.03527CORUM_CSA-POLIIA_COMPLEX
-0.17343 -0.00005 -0.16712 -0.04867NCI_SWITCHING_OF_ORIGINS_TO_A_POST_REPLICATIVE_STATE
-0.00045 -0.17563 -0.00221 -0.02230REACTOME_HIV_LIFE_CYCLE
-0.00915 -0.00004 -0.13493 -0.00560NCI_DEGRADATION_OF_BETA_CATENIN_BY_THE_DESTRUCTION_COMPLEX
-0.00045 -0.13224 -0.06021 -0.02017NCI_MICRORNA__MIRNA__BIOGENESIS
-0.00009 -0.13089 -0.00344 -0.00257NCI_TRANSCRIPTION_OF_THE_HIV_GENOME
-0.00008 -0.05016 -0.00883 -0.00046NCI_MRNA_SPLICING___MINOR_PATHWAY
-0.01686 -0.15205 -0.02124 -0.04266KEGG_NUCLEOTIDE_EXCISION_REPAIR
-0.13628 -0.00002 -0.12841 -0.00258REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_